Clone Sequence Records
BS11654.3prime Sequence
693 bp (693 high quality bases) assembled on 2006-06-16
> BS11654.3prime
ATGGTCTAGAAAGCTTCTAGTGACGCAGGCGACTCAGGATGTTGGCGGGT
AGGTAGTTGCTCTGGGGCACCTGTTGAGGAGTAACGCGTGCTGGAGCAGC
TCCCTGGGATGCAAAGTTGATGGCATTAGCCACGCCACCGTTGATGGACT
GGCTGGAGCCGCCGAGTTGATCGTACTGCGATTGGATTGCCCGCTGGGCA
TTGGCAGCATCCTCAGGTGTCCTGTACTTGACGAAGTGCACCTCGGGCTT
CTTGTTGGCATTCTGGCGCACGGCATTGAATTTCTGGGCCAGCTCGTTGA
TATCAGTCTGTTTGTGCAGCACATATATGGCAGTCTGCTGCTGGGCCGCC
TGTTTAGCCAGGGCCAAAACGGCATTCTCGTAGCCACGGTTCTCCGGCGA
CTTGATGAAGATGACGCGAATGTTCTTCTTGACCGAGGCAAGAGCCCTCT
GGAGAGCAGCCTTATCCTCGAAGTCGTCATCGTTGGCATAGAAGCTGTAG
AACTCCTTGTGAACTGACGCCTGGGGAGCGGCACTATAGCTAACTGGTCC
CGCCAGTGCAGGGACTGGGGATACACCACTGCCCCCAATACTGGTTGTCG
CACCTTGTCCGTAATTATATCCGGACAAGCTACCGGCACTTGCCGCTGCC
ACAATGCTTAGAATAATGAGGGCACGCATGTCGACTGATAACT
BS11654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14240-PA | 663 | CG14240-RA | 1..663 | 679..17 | 3315 | 100 | Minus |
CG6452-PA | 690 | CG6452-RA | 442..516 | 244..170 | 225 | 92 | Minus |
CG5476-PA | 930 | CG5476-RA | 689..723 | 258..224 | 150 | 97.1 | Minus |
CG6460-PA | 744 | CG6460-RA | 507..540 | 257..224 | 145 | 97 | Minus |
CG6478-PA | 861 | CG6478-RA | 627..660 | 257..224 | 145 | 97 | Minus |
CG5468-PA | 867 | CG5468-RA | 639..672 | 257..224 | 145 | 97 | Minus |
CG5471-PA | 924 | CG5471-RA | 615..648 | 257..224 | 145 | 97 | Minus |
CG6447-PB | 840 | CG6447-RB | 610..642 | 256..224 | 140 | 96.9 | Minus |
CG6447-PA | 858 | CG6447-RA | 628..660 | 256..224 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 757 | CG14240-RA | 41..705 | 679..15 | 3325 | 100 | Minus |
TwdlO-RA | 807 | CG6452-RA | 309..620 | 418..107 | 645 | 80.4 | Minus |
TwdlN-RA | 1088 | CG5476-RA | 594..902 | 415..107 | 480 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26620660..26621324 | 15..679 | 3325 | 100 | Plus |
3R | 32079331 | 3R | 26626119..26626430 | 107..418 | 645 | 80.4 | Plus |
3R | 32079331 | 3R | 26632462..26632770 | 415..107 | 480 | 77 | Minus |
3R | 32079331 | 3R | 26624784..26625073 | 129..418 | 460 | 77.2 | Plus |
3R | 32079331 | 3R | 26619721..26620004 | 418..135 | 445 | 77.1 | Minus |
3R | 32079331 | 3R | 26622700..26622963 | 155..418 | 435 | 77.7 | Plus |
3R | 32079331 | 3R | 26628090..26628362 | 146..418 | 405 | 76.6 | Plus |
3R | 32079331 | 3R | 26630310..26630560 | 418..168 | 385 | 76.9 | Minus |
3R | 32079331 | 3R | 26634193..26634450 | 412..155 | 270 | 73.6 | Minus |
3R | 32079331 | 3R | 26640630..26640705 | 258..183 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:52:49 has no hits.
BS11654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:44 Download gff for
BS11654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14240-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:22 Download gff for
BS11654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..705 | 15..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:56 Download gff for
BS11654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..705 | 15..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:56 Download gff for
BS11654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26620660..26621335 | 15..689 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:22 Download gff for
BS11654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22446382..22447057 | 15..689 | 99 | | Plus |
BS11654.5prime Sequence
693 bp (693 high quality bases) assembled on 2006-06-16
> BS11654.5prime
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACTAGAAGCTTTCTAGACC
BS11654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14240-PA | 663 | CG14240-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
CG6452-PA | 690 | CG6452-RA | 442..516 | 452..526 | 225 | 92 | Plus |
CG5476-PA | 930 | CG5476-RA | 689..723 | 438..472 | 150 | 97.1 | Plus |
CG6460-PA | 744 | CG6460-RA | 507..540 | 439..472 | 145 | 97 | Plus |
CG6478-PA | 861 | CG6478-RA | 627..660 | 439..472 | 145 | 97 | Plus |
CG5468-PA | 867 | CG5468-RA | 639..672 | 439..472 | 145 | 97 | Plus |
CG5471-PA | 924 | CG5471-RA | 615..648 | 439..472 | 145 | 97 | Plus |
CG6447-PB | 840 | CG6447-RB | 610..642 | 440..472 | 140 | 96.9 | Plus |
CG6447-PA | 858 | CG6447-RA | 628..660 | 440..472 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 757 | CG14240-RA | 41..705 | 17..681 | 3325 | 100 | Plus |
TwdlO-RA | 807 | CG6452-RA | 309..620 | 278..589 | 645 | 80.4 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 594..902 | 281..589 | 480 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26620660..26621324 | 681..17 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 26626119..26626430 | 589..278 | 645 | 80.4 | Minus |
3R | 32079331 | 3R | 26632462..26632770 | 281..589 | 480 | 77 | Plus |
3R | 32079331 | 3R | 26624784..26625073 | 567..278 | 460 | 77.2 | Minus |
3R | 32079331 | 3R | 26619721..26620004 | 278..561 | 445 | 77.1 | Plus |
3R | 32079331 | 3R | 26622700..26622963 | 541..278 | 435 | 77.7 | Minus |
3R | 32079331 | 3R | 26628090..26628362 | 550..278 | 405 | 76.6 | Minus |
3R | 32079331 | 3R | 26630310..26630560 | 278..528 | 385 | 76.9 | Plus |
3R | 32079331 | 3R | 26634193..26634450 | 284..541 | 270 | 73.6 | Plus |
3R | 32079331 | 3R | 26640630..26640705 | 438..513 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:42:54 has no hits.
BS11654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:45 Download gff for
BS11654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14240-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:38 Download gff for
BS11654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..705 | 7..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:30 Download gff for
BS11654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 30..705 | 7..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:30 Download gff for
BS11654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26620660..26621335 | 7..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:38 Download gff for
BS11654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22446382..22447057 | 7..681 | 99 | | Minus |
BS11654.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ636921
> BS11654.complete
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACTAGAAGCTTTCTAGACCAT
BS11654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 663 | CG14240-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
TwdlO-RA | 690 | CG6452-PA | 268..579 | 278..589 | 645 | 80.4 | Plus |
TwdlN-RA | 930 | CG5476-PA | 532..840 | 281..589 | 480 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-RA | 757 | CG14240-RA | 41..705 | 17..681 | 3325 | 100 | Plus |
TwdlO-RA | 807 | CG6452-RA | 309..620 | 278..589 | 645 | 80.4 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 594..902 | 281..589 | 480 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26620660..26621324 | 681..17 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 26626119..26626430 | 589..278 | 645 | 80.4 | Minus |
3R | 32079331 | 3R | 26632462..26632770 | 281..589 | 480 | 77 | Plus |
3R | 32079331 | 3R | 26624784..26625073 | 567..278 | 460 | 77.2 | Minus |
3R | 32079331 | 3R | 26619721..26620004 | 278..561 | 445 | 77.1 | Plus |
3R | 32079331 | 3R | 26622700..26622963 | 541..278 | 435 | 77.7 | Minus |
3R | 32079331 | 3R | 26628090..26628362 | 550..278 | 405 | 76.6 | Minus |
3R | 32079331 | 3R | 26630310..26630560 | 278..528 | 385 | 76.9 | Plus |
3R | 32079331 | 3R | 26634193..26634450 | 284..541 | 270 | 73.6 | Plus |
3R | 32079331 | 3R | 26640630..26640705 | 438..513 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:06:15 has no hits.
BS11654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:51 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:51 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 26..701 | 7..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:50 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 41..703 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:52 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 26..701 | 7..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:16 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlP-RA | 41..703 | 17..679 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:16 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26620662..26621324 | 17..679 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:50 Download gff for
BS11654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22446384..22447046 | 17..679 | 100 | | Minus |
BS11654.pep Sequence
Translation from 16 to 678
> BS11654.pep
MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA
APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY
ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV
KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT
PQQVPQSNYLPANILSRLRH*
BS11654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlP-PA | 220 | CG14240-PA | 1..220 | 1..220 | 1099 | 100 | Plus |
TwdlN-PA | 309 | CG5476-PA | 107..307 | 18..220 | 641 | 63.2 | Plus |
TwdlO-PA | 229 | CG6452-PA | 1..227 | 1..219 | 612 | 60 | Plus |
TwdlL-PB | 279 | CG6447-PB | 69..277 | 8..217 | 604 | 59.7 | Plus |
TwdlL-PA | 285 | CG6447-PA | 75..283 | 8..217 | 604 | 59.7 | Plus |