Clone BS11654 Report

Search the DGRC for BS11654

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlP-RA
Protein status:BS11654.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11654.3prime Sequence

693 bp (693 high quality bases) assembled on 2006-06-16

> BS11654.3prime
ATGGTCTAGAAAGCTTCTAGTGACGCAGGCGACTCAGGATGTTGGCGGGT
AGGTAGTTGCTCTGGGGCACCTGTTGAGGAGTAACGCGTGCTGGAGCAGC
TCCCTGGGATGCAAAGTTGATGGCATTAGCCACGCCACCGTTGATGGACT
GGCTGGAGCCGCCGAGTTGATCGTACTGCGATTGGATTGCCCGCTGGGCA
TTGGCAGCATCCTCAGGTGTCCTGTACTTGACGAAGTGCACCTCGGGCTT
CTTGTTGGCATTCTGGCGCACGGCATTGAATTTCTGGGCCAGCTCGTTGA
TATCAGTCTGTTTGTGCAGCACATATATGGCAGTCTGCTGCTGGGCCGCC
TGTTTAGCCAGGGCCAAAACGGCATTCTCGTAGCCACGGTTCTCCGGCGA
CTTGATGAAGATGACGCGAATGTTCTTCTTGACCGAGGCAAGAGCCCTCT
GGAGAGCAGCCTTATCCTCGAAGTCGTCATCGTTGGCATAGAAGCTGTAG
AACTCCTTGTGAACTGACGCCTGGGGAGCGGCACTATAGCTAACTGGTCC
CGCCAGTGCAGGGACTGGGGATACACCACTGCCCCCAATACTGGTTGTCG
CACCTTGTCCGTAATTATATCCGGACAAGCTACCGGCACTTGCCGCTGCC
ACAATGCTTAGAATAATGAGGGCACGCATGTCGACTGATAACT

BS11654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14240-PA 663 CG14240-RA 1..663 679..17 3315 100 Minus
CG6452-PA 690 CG6452-RA 442..516 244..170 225 92 Minus
CG5476-PA 930 CG5476-RA 689..723 258..224 150 97.1 Minus
CG6460-PA 744 CG6460-RA 507..540 257..224 145 97 Minus
CG6478-PA 861 CG6478-RA 627..660 257..224 145 97 Minus
CG5468-PA 867 CG5468-RA 639..672 257..224 145 97 Minus
CG5471-PA 924 CG5471-RA 615..648 257..224 145 97 Minus
CG6447-PB 840 CG6447-RB 610..642 256..224 140 96.9 Minus
CG6447-PA 858 CG6447-RA 628..660 256..224 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 757 CG14240-RA 41..705 679..15 3325 100 Minus
TwdlO-RA 807 CG6452-RA 309..620 418..107 645 80.4 Minus
TwdlN-RA 1088 CG5476-RA 594..902 415..107 480 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620660..26621324 15..679 3325 100 Plus
3R 32079331 3R 26626119..26626430 107..418 645 80.4 Plus
3R 32079331 3R 26632462..26632770 415..107 480 77 Minus
3R 32079331 3R 26624784..26625073 129..418 460 77.2 Plus
3R 32079331 3R 26619721..26620004 418..135 445 77.1 Minus
3R 32079331 3R 26622700..26622963 155..418 435 77.7 Plus
3R 32079331 3R 26628090..26628362 146..418 405 76.6 Plus
3R 32079331 3R 26630310..26630560 418..168 385 76.9 Minus
3R 32079331 3R 26634193..26634450 412..155 270 73.6 Minus
3R 32079331 3R 26640630..26640705 258..183 185 82.9 Minus
Blast to na_te.dros performed on 2015-02-12 17:52:49 has no hits.

BS11654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:44 Download gff for BS11654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14240-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:22 Download gff for BS11654.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..705 15..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:56 Download gff for BS11654.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..705 15..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:56 Download gff for BS11654.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26620660..26621335 15..689 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:22 Download gff for BS11654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446382..22447057 15..689 99   Plus

BS11654.5prime Sequence

693 bp (693 high quality bases) assembled on 2006-06-16

> BS11654.5prime
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACTAGAAGCTTTCTAGACC

BS11654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14240-PA 663 CG14240-RA 1..663 17..679 3315 100 Plus
CG6452-PA 690 CG6452-RA 442..516 452..526 225 92 Plus
CG5476-PA 930 CG5476-RA 689..723 438..472 150 97.1 Plus
CG6460-PA 744 CG6460-RA 507..540 439..472 145 97 Plus
CG6478-PA 861 CG6478-RA 627..660 439..472 145 97 Plus
CG5468-PA 867 CG5468-RA 639..672 439..472 145 97 Plus
CG5471-PA 924 CG5471-RA 615..648 439..472 145 97 Plus
CG6447-PB 840 CG6447-RB 610..642 440..472 140 96.9 Plus
CG6447-PA 858 CG6447-RA 628..660 440..472 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 757 CG14240-RA 41..705 17..681 3325 100 Plus
TwdlO-RA 807 CG6452-RA 309..620 278..589 645 80.4 Plus
TwdlN-RA 1088 CG5476-RA 594..902 281..589 480 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620660..26621324 681..17 3325 100 Minus
3R 32079331 3R 26626119..26626430 589..278 645 80.4 Minus
3R 32079331 3R 26632462..26632770 281..589 480 77 Plus
3R 32079331 3R 26624784..26625073 567..278 460 77.2 Minus
3R 32079331 3R 26619721..26620004 278..561 445 77.1 Plus
3R 32079331 3R 26622700..26622963 541..278 435 77.7 Minus
3R 32079331 3R 26628090..26628362 550..278 405 76.6 Minus
3R 32079331 3R 26630310..26630560 278..528 385 76.9 Plus
3R 32079331 3R 26634193..26634450 284..541 270 73.6 Plus
3R 32079331 3R 26640630..26640705 438..513 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-11 17:42:54 has no hits.

BS11654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:45 Download gff for BS11654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14240-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:38 Download gff for BS11654.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..705 7..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:30 Download gff for BS11654.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 30..705 7..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:30 Download gff for BS11654.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26620660..26621335 7..681 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:38 Download gff for BS11654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446382..22447057 7..681 99   Minus

BS11654.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ636921

> BS11654.complete
GAAGTTATCAGTCGACATGCGTGCCCTCATTATTCTAAGCATTGTGGCAG
CGGCAAGTGCCGGTAGCTTGTCCGGATATAATTACGGACAAGGTGCGACA
ACCAGTATTGGGGGCAGTGGTGTATCCCCAGTCCCTGCACTGGCGGGACC
AGTTAGCTATAGTGCCGCTCCCCAGGCGTCAGTTCACAAGGAGTTCTACA
GCTTCTATGCCAACGATGACGACTTCGAGGATAAGGCTGCTCTCCAGAGG
GCTCTTGCCTCGGTCAAGAAGAACATTCGCGTCATCTTCATCAAGTCGCC
GGAGAACCGTGGCTACGAGAATGCCGTTTTGGCCCTGGCTAAACAGGCGG
CCCAGCAGCAGACTGCCATATATGTGCTGCACAAACAGACTGATATCAAC
GAGCTGGCCCAGAAATTCAATGCCGTGCGCCAGAATGCCAACAAGAAGCC
CGAGGTGCACTTCGTCAAGTACAGGACACCTGAGGATGCTGCCAATGCCC
AGCGGGCAATCCAATCGCAGTACGATCAACTCGGCGGCTCCAGCCAGTCC
ATCAACGGTGGCGTGGCTAATGCCATCAACTTTGCATCCCAGGGAGCTGC
TCCAGCACGCGTTACTCCTCAACAGGTGCCCCAGAGCAACTACCTACCCG
CCAACATCCTGAGTCGCCTGCGTCACTAGAAGCTTTCTAGACCAT

BS11654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 663 CG14240-PA 1..663 17..679 3315 100 Plus
TwdlO-RA 690 CG6452-PA 268..579 278..589 645 80.4 Plus
TwdlN-RA 930 CG5476-PA 532..840 281..589 480 77 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-RA 757 CG14240-RA 41..705 17..681 3325 100 Plus
TwdlO-RA 807 CG6452-RA 309..620 278..589 645 80.4 Plus
TwdlN-RA 1088 CG5476-RA 594..902 281..589 480 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26620660..26621324 681..17 3325 100 Minus
3R 32079331 3R 26626119..26626430 589..278 645 80.4 Minus
3R 32079331 3R 26632462..26632770 281..589 480 77 Plus
3R 32079331 3R 26624784..26625073 567..278 460 77.2 Minus
3R 32079331 3R 26619721..26620004 278..561 445 77.1 Plus
3R 32079331 3R 26622700..26622963 541..278 435 77.7 Minus
3R 32079331 3R 26628090..26628362 550..278 405 76.6 Minus
3R 32079331 3R 26630310..26630560 278..528 385 76.9 Plus
3R 32079331 3R 26634193..26634450 284..541 270 73.6 Plus
3R 32079331 3R 26640630..26640705 438..513 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-26 22:06:15 has no hits.

BS11654.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:51 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:51 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 26..701 7..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:50 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 41..703 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:52 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 26..701 7..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:16 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlP-RA 41..703 17..679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:16 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26620662..26621324 17..679 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:50 Download gff for BS11654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22446384..22447046 17..679 100   Minus

BS11654.pep Sequence

Translation from 16 to 678

> BS11654.pep
MRALIILSIVAAASAGSLSGYNYGQGATTSIGGSGVSPVPALAGPVSYSA
APQASVHKEFYSFYANDDDFEDKAALQRALASVKKNIRVIFIKSPENRGY
ENAVLALAKQAAQQQTAIYVLHKQTDINELAQKFNAVRQNANKKPEVHFV
KYRTPEDAANAQRAIQSQYDQLGGSSQSINGGVANAINFASQGAAPARVT
PQQVPQSNYLPANILSRLRH*

BS11654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlP-PA 220 CG14240-PA 1..220 1..220 1099 100 Plus
TwdlN-PA 309 CG5476-PA 107..307 18..220 641 63.2 Plus
TwdlO-PA 229 CG6452-PA 1..227 1..219 612 60 Plus
TwdlL-PB 279 CG6447-PB 69..277 8..217 604 59.7 Plus
TwdlL-PA 285 CG6447-PA 75..283 8..217 604 59.7 Plus