Clone BS11656 Report

Search the DGRC for BS11656

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-IIa-RA
Protein status:BS11656.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11656.complete Sequence

1328 bp assembled on 2006-11-01

GenBank Submission: FJ636922

> BS11656.complete
GAAGTTATCAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAG
CCGGCGACTTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGAT
ACGGGACATCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTT
TCCAGCCAGATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGG
AGCTCGTCGAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCG
GCAGTGCGACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGA
CGGGGCTCCACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCT
ACCGCTACACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCC
GGCATTCACGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCG
CAACGTGGGATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCG
ATGCCCCGCTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTT
GAACTGCCCGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGA
GCCCGGCGATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGC
GGGCAGAACTCACATTTACCATCAACAACATGGTGATAACCCATGTGGAC
ACCGAGTACATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCT
GAAGATGCAATTGCAGGGCATTCACTTTTCCAGCGTGAATCCGGCCATCT
ACAATAACGTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGTT
TATGCCCCGAATTCGAATCCTGGCGGATTACTTTTGCGCTGCTCGGCGCA
AATCGGGGATCTATACCAGGAGTACAAGGAAATCGAGCTGGGCACTCCGC
AAAAGGATCCGGTACCGGCACGTGTCACGCTCTCATCCGACACGAGCTTG
AAGAACTTTTTCAGCTCGTATTTCTCGACCTCGGCATCGGCGGCATCGCG
ACTCCTGCCCGGCGTCTACATGGCGCCGCTTATAATGGCCATGCTGGCTA
GTTTATTCCGGCTAATTGAGGCTGCATTTGAGCCCTGCGATGCCAGCAGC
CAGGATCCACAGTCACAGACCGGACATTCGATGGAACATTCCAAGGAGCG
AAGGGAGCCCAAGGAGCGTCCAGCTCTTGTGTCCAGCTGCAGCGTCTCCA
AGGCGTCCAGACAGCAACTGGCCTGGCCAGGATCACGGACAGAAAGTCTG
CGTCTGGCCTAGAAGCTTTCTAGACCAT

BS11656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-RB 1296 CG14334-PB 1..1296 17..1312 6480 100 Plus
beat-IIa-RA 1296 CG14334-PA 1..1296 17..1312 6480 100 Plus
beat-IIb-RC 1215 CG4135-PC 316..698 248..630 415 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-RB 2829 CG14334-RB 747..2047 12..1312 6490 99.9 Plus
beat-IIa-RA 2984 CG14334-RA 902..2202 12..1312 6490 99.9 Plus
beat-IIb-RC 2442 CG4135-RC 1036..1418 248..630 415 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17320786..17321124 1312..974 1695 100 Minus
3R 32079331 3R 17321216..17321505 974..685 1450 100 Minus
3R 32079331 3R 17332490..17332710 420..200 1105 100 Minus
3R 32079331 3R 17345399..17345587 200..12 930 99.5 Minus
3R 32079331 3R 17331018..17331153 551..416 680 100 Minus
3R 32079331 3R 17327233..17327367 685..551 675 100 Minus
3R 32079331 3R 17233237..17233312 969..894 275 90.8 Minus
3R 32079331 3R 17239703..17239860 405..248 220 75.9 Minus
Blast to na_te.dros performed on 2014-11-27 07:00:16 has no hits.

BS11656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:53 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 1..1296 17..1312 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:52 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 905..2200 17..1312 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:02 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 907..2202 17..1312 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:53 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 893..2202 5..1316 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:31 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
beat-IIa-RA 907..2202 17..1312 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:31 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17345399..17345582 17..200 100   Minus
3R 17327233..17327366 552..685 100 <- Minus
3R 17331018..17331153 416..551 100 <- Minus
3R 17332495..17332709 201..415 100 <- Minus
3R 17320786..17321123 975..1312 100 <- Minus
3R 17321216..17321504 686..974 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:02 Download gff for BS11656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13152955..13153088 552..685 100 <- Minus
arm_3R 13156740..13156875 416..551 100 <- Minus
arm_3R 13158217..13158431 201..415 100 <- Minus
arm_3R 13146508..13146845 975..1312 100 <- Minus
arm_3R 13146938..13147226 686..974 100 <- Minus
arm_3R 13171121..13171304 17..200 100   Minus

BS11656.pep Sequence

Translation from 16 to 1311

> BS11656.pep
MLELQLCGDLSAGDLSEIPKMGHQRATDTGHRQIRSHRKSDCRTFPARCL
LLLLGVLLLSMELVECALRNVNLIIEPPAVRRGQHVVLRCMYDLDGAPLY
SAKFYRGQLEFYRYTPGEFPNTKVFPFPGIHVDVSSSNATQVLLRNVGFG
LSGNFSCEVTADAPLFSTATAVDTMQVVELPEKRPQVFTEHTRYEPGDVL
RANCSTPPSRPRAELTFTINNMVITHVDTEYIRTIDNLIATRISLKMQLQ
GIHFSSVNPAIYNNVYGLNSVYGHGGPVYAPNSNPGGLLLRCSAQIGDLY
QEYKEIELGTPQKDPVPARVTLSSDTSLKNFFSSYFSTSASAASRLLPGV
YMAPLIMAMLASLFRLIEAAFEPCDASSQDPQSQTGHSMEHSKERREPKE
RPALVSSCSVSKASRQQLAWPGSRTESLRLA*

BS11656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
beat-IIa-PB 431 CG14334-PB 1..431 1..431 2234 100 Plus
beat-IIa-PA 431 CG14334-PA 1..431 1..431 2234 100 Plus
beat-IIb-PC 404 CG4135-PC 84..381 56..344 964 64.2 Plus
beat-IIb-PA 407 CG4135-PA 84..384 56..344 950 63.6 Plus
beat-Ia-PA 427 CG4846-PA 3..238 45..305 420 38.9 Plus