BS11656.complete Sequence
1328 bp assembled on 2006-11-01
GenBank Submission: FJ636922
> BS11656.complete
GAAGTTATCAGTCGACATGCTGGAGTTGCAACTTTGCGGAGATTTGTCAG
CCGGCGACTTGAGCGAAATTCCCAAAATGGGACACCAAAGGGCCACGGAT
ACGGGACATCGCCAGATCCGGAGCCACAGAAAATCCGACTGCCGGACTTT
TCCAGCCAGATGCCTCCTGCTGCTACTCGGCGTTCTACTTCTGAGCATGG
AGCTCGTCGAATGCGCGCTGCGCAATGTCAATTTAATAATCGAACCACCG
GCAGTGCGACGGGGCCAGCATGTGGTGCTGCGGTGCATGTACGACCTGGA
CGGGGCTCCACTGTACTCGGCTAAGTTCTACCGTGGCCAGCTGGAGTTCT
ACCGCTACACGCCCGGCGAGTTTCCCAATACGAAAGTGTTTCCATTCCCC
GGCATTCACGTGGATGTAAGCAGCTCCAATGCCACCCAGGTGCTGTTGCG
CAACGTGGGATTCGGTCTCTCTGGCAACTTTTCATGCGAAGTGACCGCCG
ATGCCCCGCTCTTCTCAACCGCCACCGCAGTGGACACCATGCAAGTTGTT
GAACTGCCCGAGAAGCGTCCGCAGGTTTTCACGGAACACACACGCTACGA
GCCCGGCGATGTCCTGCGGGCCAATTGCAGCACACCGCCGTCGCGTCCGC
GGGCAGAACTCACATTTACCATCAACAACATGGTGATAACCCATGTGGAC
ACCGAGTACATTCGCACCATTGATAATCTGATTGCCACGCGGATCTCGCT
GAAGATGCAATTGCAGGGCATTCACTTTTCCAGCGTGAATCCGGCCATCT
ACAATAACGTTTACGGGCTGAACTCGGTTTACGGGCATGGAGGACCGGTT
TATGCCCCGAATTCGAATCCTGGCGGATTACTTTTGCGCTGCTCGGCGCA
AATCGGGGATCTATACCAGGAGTACAAGGAAATCGAGCTGGGCACTCCGC
AAAAGGATCCGGTACCGGCACGTGTCACGCTCTCATCCGACACGAGCTTG
AAGAACTTTTTCAGCTCGTATTTCTCGACCTCGGCATCGGCGGCATCGCG
ACTCCTGCCCGGCGTCTACATGGCGCCGCTTATAATGGCCATGCTGGCTA
GTTTATTCCGGCTAATTGAGGCTGCATTTGAGCCCTGCGATGCCAGCAGC
CAGGATCCACAGTCACAGACCGGACATTCGATGGAACATTCCAAGGAGCG
AAGGGAGCCCAAGGAGCGTCCAGCTCTTGTGTCCAGCTGCAGCGTCTCCA
AGGCGTCCAGACAGCAACTGGCCTGGCCAGGATCACGGACAGAAAGTCTG
CGTCTGGCCTAGAAGCTTTCTAGACCAT
BS11656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-RB | 1296 | CG14334-PB | 1..1296 | 17..1312 | 6480 | 100 | Plus |
beat-IIa-RA | 1296 | CG14334-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
beat-IIb-RC | 1215 | CG4135-PC | 316..698 | 248..630 | 415 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-RB | 2829 | CG14334-RB | 747..2047 | 12..1312 | 6490 | 99.9 | Plus |
beat-IIa-RA | 2984 | CG14334-RA | 902..2202 | 12..1312 | 6490 | 99.9 | Plus |
beat-IIb-RC | 2442 | CG4135-RC | 1036..1418 | 248..630 | 415 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17320786..17321124 | 1312..974 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 17321216..17321505 | 974..685 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 17332490..17332710 | 420..200 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 17345399..17345587 | 200..12 | 930 | 99.5 | Minus |
3R | 32079331 | 3R | 17331018..17331153 | 551..416 | 680 | 100 | Minus |
3R | 32079331 | 3R | 17327233..17327367 | 685..551 | 675 | 100 | Minus |
3R | 32079331 | 3R | 17233237..17233312 | 969..894 | 275 | 90.8 | Minus |
3R | 32079331 | 3R | 17239703..17239860 | 405..248 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:16 has no hits.
BS11656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:53 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 1..1296 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:52 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 905..2200 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:02 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 907..2202 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:53 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 893..2202 | 5..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:31 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-IIa-RA | 907..2202 | 17..1312 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:31 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17345399..17345582 | 17..200 | 100 | | Minus |
3R | 17327233..17327366 | 552..685 | 100 | <- | Minus |
3R | 17331018..17331153 | 416..551 | 100 | <- | Minus |
3R | 17332495..17332709 | 201..415 | 100 | <- | Minus |
3R | 17320786..17321123 | 975..1312 | 100 | <- | Minus |
3R | 17321216..17321504 | 686..974 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:02 Download gff for
BS11656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13152955..13153088 | 552..685 | 100 | <- | Minus |
arm_3R | 13156740..13156875 | 416..551 | 100 | <- | Minus |
arm_3R | 13158217..13158431 | 201..415 | 100 | <- | Minus |
arm_3R | 13146508..13146845 | 975..1312 | 100 | <- | Minus |
arm_3R | 13146938..13147226 | 686..974 | 100 | <- | Minus |
arm_3R | 13171121..13171304 | 17..200 | 100 | | Minus |
BS11656.pep Sequence
Translation from 16 to 1311
> BS11656.pep
MLELQLCGDLSAGDLSEIPKMGHQRATDTGHRQIRSHRKSDCRTFPARCL
LLLLGVLLLSMELVECALRNVNLIIEPPAVRRGQHVVLRCMYDLDGAPLY
SAKFYRGQLEFYRYTPGEFPNTKVFPFPGIHVDVSSSNATQVLLRNVGFG
LSGNFSCEVTADAPLFSTATAVDTMQVVELPEKRPQVFTEHTRYEPGDVL
RANCSTPPSRPRAELTFTINNMVITHVDTEYIRTIDNLIATRISLKMQLQ
GIHFSSVNPAIYNNVYGLNSVYGHGGPVYAPNSNPGGLLLRCSAQIGDLY
QEYKEIELGTPQKDPVPARVTLSSDTSLKNFFSSYFSTSASAASRLLPGV
YMAPLIMAMLASLFRLIEAAFEPCDASSQDPQSQTGHSMEHSKERREPKE
RPALVSSCSVSKASRQQLAWPGSRTESLRLA*
BS11656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-IIa-PB | 431 | CG14334-PB | 1..431 | 1..431 | 2234 | 100 | Plus |
beat-IIa-PA | 431 | CG14334-PA | 1..431 | 1..431 | 2234 | 100 | Plus |
beat-IIb-PC | 404 | CG4135-PC | 84..381 | 56..344 | 964 | 64.2 | Plus |
beat-IIb-PA | 407 | CG4135-PA | 84..384 | 56..344 | 950 | 63.6 | Plus |
beat-Ia-PA | 427 | CG4846-PA | 3..238 | 45..305 | 420 | 38.9 | Plus |