BS11661.complete Sequence
1595 bp assembled on 2006-11-01
GenBank Submission: FJ636923
> BS11661.complete
GAAGTTATCAGTCGACATGGCATACGAACGTTTTGGAATTATTCTTCAAA
GTGAACAGTACGATGAAGATATAGGCAACACAAAAGTCAATCAGAAAATG
AATGAAGGCAACCACTACGACTTACACAGAAAAAATGCGTTTGACCGAAT
TATTCATTCAGAATCAAAAAAAGGTGATAACGTAATTAATTACAACATTC
ATGAAAACGACAAAATAAAAGCGGCTGACAATATATTTTCTTCTAAATTA
AAAATGAACCCGAATATGAGCTATGAAATGAATATCAACTGTTTTAAAAA
TATTGGATATGGCGAAAATCAAGAAACTTCAAAAGTTTTAACAAATAGTT
TATCGAACAATGATATTAATACCGAAGAGTCTGGTGTTGTCGATAAAAAT
TCACCTTTCCTAACCTTAGGTACAACTATACTTAATTCAAACGGCAAGTC
AAGACGGTGGGAACAAAAGCTTGTTCATATTAAAACTATGGAGGGAGAGT
TTAGTGTTACAATGTGGGCATCCGGGATATCAGACGATGAATACTCTGGT
TCAGATCAAATCGTTGGGGCTTCGGATTTATTAAAAGGAAAGGAAGAATT
TGGCATTGATGGCTTCACGTCTCAACAAAATAAAGAATACCAGAAAATGG
AGTCAAAATTTACAAATGCACAGACCCTTGAAATGCCGCATCCTATAAGC
TCAGTTCAGATCATGGATCATTTAATAAAGGAAAGGGGAAATTTATCGCA
AGAAAATAATATTTCCGAAAGAATTTTATCTAAGACCACCTTAAGCTTTG
AAGAGCCAATCTTGCTTCCGGATTCTTCAAGTATTGAGTTAGTTAACGAA
ACTGCCGCAATGACAATTAATAATCACAGAACTTTAAGTAATCATACGGG
CAACACCGGTGATCTGCATGCTTTGCCCAGCTCAGTGCCATTTCGTATTG
GCTTGCATGAGGGGCAAGTAAATGATTGCTTATCAACAATATCACAATCA
ACTCACCAAGACAATACAGACTCGACTGGATGTGGGGAAATGAATCTTTC
CGAAGTTACAGTATCTTATACAAATGATAAAAAAATAGCTTGCCCACATA
AGGGTTGTAATAAGCACTTCAGAGATTCATCTGCAATGCGAAAACATTTG
CACACTCACGGTCCTCGAGTCCATGTTTGTGCAGAATGTGGAAAAGCTTT
CGTAGAAAGCTCAAAGCTTAAAAGACATCAGTTGGTTCACACCGGTGAAA
AACCATTTCAATGTACATTCGAGGGATGCGGAAAACGATTTTCTCTGGAT
TTTAACTTAAGAACACACGTAAGAATACATACTGGAGATAGACCATTTGT
TTGTCCGTTTGATGCCTGTAATAAAAAATTTGCTCAATCCACGAATTTAA
AATCGCACATATTAACTCACGCAAAAGCAAAGAGAAATACCAGTATTTCG
GGGAAAAGTGGTTGTTCAAACGCTGAATCAAACAGCCAGAGTGAAGATAC
CTCTGCAAACTATGTTAAGGTTGAGTTACAGGATAGTGTTACAGAAAACC
ATGTACCGTTTGTGGTATATGCAGACTGAAAGCTTTCTAGACCAT
BS11661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pho-RB | 1563 | CG17743-PB | 1..1563 | 17..1579 | 7815 | 100 | Plus |
pho-RA | 1563 | CG17743-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pho-RB | 2159 | CG17743-RB | 183..1746 | 17..1580 | 7820 | 100 | Plus |
pho-RA | 2381 | CG17743-RA | 405..1968 | 17..1580 | 7820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1174159..1174928 | 1019..250 | 3850 | 100 | Minus |
4 | 1348131 | 4 | 1173806..1174099 | 1311..1018 | 1470 | 100 | Minus |
4 | 1348131 | 4 | 1172882..1173030 | 1580..1432 | 745 | 100 | Minus |
4 | 1348131 | 4 | 1174982..1175125 | 249..106 | 720 | 100 | Minus |
4 | 1348131 | 4 | 1173083..1173205 | 1432..1310 | 615 | 100 | Minus |
4 | 1348131 | 4 | 1181047..1181138 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:48 has no hits.
BS11661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:39 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pho-RB | 1..1563 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:35 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pho-RB | 165..1742 | 11..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:46 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pho-RA | 405..1966 | 17..1578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:39 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pho-RB | 165..1742 | 11..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:59 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pho-RA | 405..1966 | 17..1578 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:59 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1173806..1174097 | 1020..1311 | 100 | <- | Minus |
4 | 1174159..1174928 | 250..1019 | 100 | <- | Minus |
4 | 1174982..1175123 | 108..249 | 100 | <- | Minus |
4 | 1181048..1181138 | 17..107 | 100 | | Minus |
4 | 1173084..1173203 | 1312..1431 | 100 | <- | Minus |
4 | 1172884..1173030 | 1432..1578 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:46 Download gff for
BS11661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1193510..1193656 | 1432..1578 | 100 | <- | Minus |
arm_4 | 1193710..1193829 | 1312..1431 | 100 | <- | Minus |
arm_4 | 1194432..1194723 | 1020..1311 | 100 | <- | Minus |
arm_4 | 1194785..1195554 | 250..1019 | 100 | <- | Minus |
arm_4 | 1195608..1195749 | 108..249 | 100 | <- | Minus |
arm_4 | 1201674..1201764 | 17..107 | 100 | | Minus |
BS11661.pep Sequence
Translation from 16 to 1578
> BS11661.pep
MAYERFGIILQSEQYDEDIGNTKVNQKMNEGNHYDLHRKNAFDRIIHSES
KKGDNVINYNIHENDKIKAADNIFSSKLKMNPNMSYEMNINCFKNIGYGE
NQETSKVLTNSLSNNDINTEESGVVDKNSPFLTLGTTILNSNGKSRRWEQ
KLVHIKTMEGEFSVTMWASGISDDEYSGSDQIVGASDLLKGKEEFGIDGF
TSQQNKEYQKMESKFTNAQTLEMPHPISSVQIMDHLIKERGNLSQENNIS
ERILSKTTLSFEEPILLPDSSSIELVNETAAMTINNHRTLSNHTGNTGDL
HALPSSVPFRIGLHEGQVNDCLSTISQSTHQDNTDSTGCGEMNLSEVTVS
YTNDKKIACPHKGCNKHFRDSSAMRKHLHTHGPRVHVCAECGKAFVESSK
LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPFVCPFDA
CNKKFAQSTNLKSHILTHAKAKRNTSISGKSGCSNAESNSQSEDTSANYV
KVELQDSVTENHVPFVVYAD*
BS11661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pho-PB | 520 | CG17743-PB | 1..520 | 1..520 | 2746 | 100 | Plus |
pho-PA | 520 | CG17743-PA | 1..520 | 1..520 | 2746 | 100 | Plus |
phol-PB | 669 | CG3445-PB | 499..618 | 354..473 | 551 | 80 | Plus |
phol-PA | 669 | CG3445-PA | 499..618 | 354..473 | 551 | 80 | Plus |
MTF-1-PA | 791 | CG3743-PA | 168..326 | 351..501 | 267 | 34 | Plus |