Clone Sequence Records
BS11662.3prime Sequence
480 bp (480 high quality bases) assembled on 2006-06-16
> BS11662.3prime
ATGGTCTAGAAAGCTTTTAGGCGCTCAGCAAGCACACACCGCCGGCCTTC
TTGATCTTGTCCTCAGCCTTCTTAGAGAAGTACTTGGCCTTCACGATGAC
GGGGCGGGCGGGCAGGTGACCACGGCCCAGCAGCTTGTAGTAGCCGAATT
TAACCAAGTCGATGACGGGAGCCTTGGTGCTCTTCTCCTTCTCCAGCTCG
GCGAACTTCTCGGCTCCGACCAGGGACCAGAGCTTGTCCAGGTTGATCTC
GGGCCTGAACTTGTGCTGGCGACGCAGATGGAAGTTCCTCATGCCCACCT
TGCCGAAGTAACCAGGATGGTATTTGTCGAAGTTGATGCGGTGATGGTGC
ATGCCACCAGCGTTACCGCGACCTCCGGGATGCTTGCGGTGCTTGCCGAT
ACGGCCGTGACCGTGGCTCACATGACCACGCAGCTTCCTGGTCTTCTTCC
GCTTGATATTCGACATGTCGACTGATAACT
BS11662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15442-PA | 450 | RpL27A-RA | 1..450 | 466..17 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 613 | CG15442-RD | 54..503 | 466..17 | 2250 | 100 | Minus |
RpL27A-RA | 586 | CG15442-RA | 27..476 | 466..17 | 2250 | 100 | Minus |
RpL27A-RC | 633 | CG15442-RC | 74..523 | 466..17 | 2250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4457739..4458058 | 145..464 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 4457381..4457509 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:43:29 has no hits.
BS11662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:47 Download gff for
BS11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15442-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:34 Download gff for
BS11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..526 | 11..466 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:12 Download gff for
BS11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..526 | 11..466 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:12 Download gff for
BS11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4457378..4457509 | 11..145 | 97 | <- | Plus |
2L | 4457740..4458067 | 146..475 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:34 Download gff for
BS11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4457378..4457509 | 11..145 | 97 | <- | Plus |
arm_2L | 4457740..4458067 | 146..475 | 98 | | Plus |
BS11662.complete Sequence
482 bp assembled on 2009-02-12
> BS11662.complete
GAAGTTATCAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGC
TGCGTGGTCATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAG
CATCCCGGAGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAA
CTTCGACAAATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACT
TCCATCTGCGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAG
CTCTGGTCCCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAA
GAGCACCAAGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGC
TGCTGGGCCGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAG
TACTTCTCTAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTG
CTTGCTGAGCGCCTAAAAGCTTTCTAGACCAT
BS11662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 450 | CG15442-PD | 1..450 | 17..466 | 2250 | 100 | Plus |
RpL27A-RA | 450 | CG15442-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
RpL27A-RC | 450 | CG15442-PC | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-RD | 613 | CG15442-RD | 54..503 | 17..466 | 2250 | 100 | Plus |
RpL27A-RA | 586 | CG15442-RA | 27..476 | 17..466 | 2250 | 100 | Plus |
RpL27A-RC | 633 | CG15442-RC | 74..523 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4457739..4458058 | 338..19 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 4457381..4457509 | 466..338 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:22 has no hits.
BS11662.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:16 Download gff for
BS11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RA | 74..521 | 17..464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:14 Download gff for
BS11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..521 | 17..464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:18 Download gff for
BS11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL27A-RC | 74..521 | 17..464 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:18 Download gff for
BS11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4457383..4457509 | 338..464 | 100 | <- | Minus |
2L | 4457740..4458059 | 17..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:14 Download gff for
BS11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4457383..4457509 | 338..464 | 100 | <- | Minus |
arm_2L | 4457740..4458059 | 17..337 | 99 | | Minus |
BS11662.pep Sequence
Translation from 16 to 465
> BS11662.pep
MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYH
PGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAP
VIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA*
BS11662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL27A-PD | 149 | CG15442-PD | 1..149 | 1..149 | 805 | 100 | Plus |
RpL27A-PA | 149 | CG15442-PA | 1..149 | 1..149 | 805 | 100 | Plus |
RpL27A-PC | 149 | CG15442-PC | 1..149 | 1..149 | 805 | 100 | Plus |