Clone BS11662 Report

Search the DGRC for BS11662

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptRpL27A-RA
Protein status:BS11662.pep: full length peptide match
Sequenced Size:482

Clone Sequence Records

BS11662.3prime Sequence

480 bp (480 high quality bases) assembled on 2006-06-16

> BS11662.3prime
ATGGTCTAGAAAGCTTTTAGGCGCTCAGCAAGCACACACCGCCGGCCTTC
TTGATCTTGTCCTCAGCCTTCTTAGAGAAGTACTTGGCCTTCACGATGAC
GGGGCGGGCGGGCAGGTGACCACGGCCCAGCAGCTTGTAGTAGCCGAATT
TAACCAAGTCGATGACGGGAGCCTTGGTGCTCTTCTCCTTCTCCAGCTCG
GCGAACTTCTCGGCTCCGACCAGGGACCAGAGCTTGTCCAGGTTGATCTC
GGGCCTGAACTTGTGCTGGCGACGCAGATGGAAGTTCCTCATGCCCACCT
TGCCGAAGTAACCAGGATGGTATTTGTCGAAGTTGATGCGGTGATGGTGC
ATGCCACCAGCGTTACCGCGACCTCCGGGATGCTTGCGGTGCTTGCCGAT
ACGGCCGTGACCGTGGCTCACATGACCACGCAGCTTCCTGGTCTTCTTCC
GCTTGATATTCGACATGTCGACTGATAACT

BS11662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15442-PA 450 RpL27A-RA 1..450 466..17 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 613 CG15442-RD 54..503 466..17 2250 100 Minus
RpL27A-RA 586 CG15442-RA 27..476 466..17 2250 100 Minus
RpL27A-RC 633 CG15442-RC 74..523 466..17 2250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4457739..4458058 145..464 1600 100 Plus
2L 23513712 2L 4457381..4457509 17..145 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:43:29 has no hits.

BS11662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:47 Download gff for BS11662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15442-PA 1..450 17..466 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:34 Download gff for BS11662.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..526 11..466 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:12 Download gff for BS11662.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..526 11..466 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:12 Download gff for BS11662.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4457378..4457509 11..145 97 <- Plus
2L 4457740..4458067 146..475 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:34 Download gff for BS11662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4457378..4457509 11..145 97 <- Plus
arm_2L 4457740..4458067 146..475 98   Plus

BS11662.complete Sequence

482 bp assembled on 2009-02-12

> BS11662.complete
GAAGTTATCAGTCGACATGTCGAATATCAAGCGGAAGAAGACCAGGAAGC
TGCGTGGTCATGTGAGCCACGGTCACGGCCGTATCGGCAAGCACCGCAAG
CATCCCGGAGGTCGCGGTAACGCTGGTGGCATGCACCATCACCGCATCAA
CTTCGACAAATACCATCCTGGTTACTTCGGCAAGGTGGGCATGAGGAACT
TCCATCTGCGTCGCCAGCACAAGTTCAGGCCCGAGATCAACCTGGACAAG
CTCTGGTCCCTGGTCGGAGCCGAGAAGTTCGCCGAGCTGGAGAAGGAGAA
GAGCACCAAGGCTCCCGTCATCGACTTGGTTAAATTCGGCTACTACAAGC
TGCTGGGCCGTGGTCACCTGCCCGCCCGCCCCGTCATCGTGAAGGCCAAG
TACTTCTCTAAGAAGGCTGAGGACAAGATCAAGAAGGCCGGCGGTGTGTG
CTTGCTGAGCGCCTAAAAGCTTTCTAGACCAT

BS11662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 450 CG15442-PD 1..450 17..466 2250 100 Plus
RpL27A-RA 450 CG15442-PA 1..450 17..466 2250 100 Plus
RpL27A-RC 450 CG15442-PC 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-RD 613 CG15442-RD 54..503 17..466 2250 100 Plus
RpL27A-RA 586 CG15442-RA 27..476 17..466 2250 100 Plus
RpL27A-RC 633 CG15442-RC 74..523 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4457739..4458058 338..19 1600 100 Minus
2L 23513712 2L 4457381..4457509 466..338 645 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:22 has no hits.

BS11662.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:16 Download gff for BS11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RA 74..521 17..464 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:14 Download gff for BS11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..521 17..464 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:18 Download gff for BS11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL27A-RC 74..521 17..464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:18 Download gff for BS11662.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4457383..4457509 338..464 100 <- Minus
2L 4457740..4458059 17..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:14 Download gff for BS11662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4457383..4457509 338..464 100 <- Minus
arm_2L 4457740..4458059 17..337 99   Minus

BS11662.pep Sequence

Translation from 16 to 465

> BS11662.pep
MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYH
PGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAP
VIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA*

BS11662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpL27A-PD 149 CG15442-PD 1..149 1..149 805 100 Plus
RpL27A-PA 149 CG15442-PA 1..149 1..149 805 100 Plus
RpL27A-PC 149 CG15442-PC 1..149 1..149 805 100 Plus