Clone BS11665 Report

Search the DGRC for BS11665

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptPvf3-RB
Protein status:BS11665.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS11665.3prime Sequence

732 bp (732 high quality bases) assembled on 2006-06-16

> BS11665.3prime
ATGGTCTAGAAAGCTTTTAAATCGAATCCCCCTTGGATTCACTCACATCA
TTATCCTCCGATTTGGCATCATTGGGTTCCGTTGCTTTCGACGTTGTTGC
CATTGCCATTGCCGTTGCCGTTGCCGTTGTCGTTGTCAGCAGTTGTCGCT
GCTGTTGTCGTTGCGCCAGCAACTGCAATTGATGTTGCTCCTTCTGCCGC
CGATGGGCAATCTCGATTTGCTGCCACTGCCGCGGGGTGAAGGTCCCCTG
ATCGCCGGTTTCGATGGTGTGCAGCTCGAGATCTTCGTTATCGTACTCGT
TGTAGTGTAGTCTGCGCTTCTGCACCATCTTGGCCTTGTCATCGCCGAAA
CTCGGTGCCCGTCTAATGGGCTTCTTGGCCAGTTCCTTGGTGTGAGATTT
ATGCTGATGATGACGCACCGGCCGGCTCTGCTGCTCCGACTGCTCCGACT
GCTGCTCCTGCAGATGCTGCTGCAGCTGCCGCTGCAAGTCCAGCTCCCAC
GCCATCTGATGTTGCTGCAGGCGCAAATGATGCTGCTCGTGTCTCAGGCG
CAATTCCTCCTGCGGATTCCGGCGCGTTCTGGTTGAACTTTTATCACGTT
CTCGTCTGAAGTCATCAGGCAACACCTTCTGCCAGCCATTATTCTGAACA
TTAGCCTGCGCCTCCAGGCGAACAAAACTTAGGAAAATCAAGGCAAGCCG
CAGGGTATTTAACTGCATGTCGACTGATAACT

BS11665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31629-PB 702 Pvf3-RB 1..702 718..17 3510 100 Minus
CG31629-PA 1449 Pvf3-RA 1..674 718..45 3370 100 Minus
CG7847-PB 2721 sr-RB 2620..2652 538..506 140 96.9 Minus
CG7847-PA 3561 sr-RA 3460..3492 538..506 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-RA 3486 CG34378-RA 133..811 718..40 3380 99.9 Minus
Pvf3-RE 2485 CG34378-RE 675..1347 718..46 3365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7132694..7133395 17..718 3510 100 Plus
Blast to na_te.dros performed 2015-02-06 10:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2870 193..79 221 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2421 198..81 219 67.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2883 562..81 215 53.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6854 196..75 211 64.8 Minus
roo 9092 roo DM_ROO 9092bp 1076..1171 205..109 203 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 229..75 195 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2255..2420 555..387 189 59.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6827 189..81 182 64.2 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7141..7226 165..81 157 66.3 Minus
TART-C 11124 TART-C TARTC 11124bp 8594..8679 165..81 157 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6917 205..81 155 60.6 Minus

BS11665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:47 Download gff for BS11665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31629-PB 1..702 17..718 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:19 Download gff for BS11665.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 33..718 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:38 Download gff for BS11665.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 33..718 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:38 Download gff for BS11665.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7132688..7133395 11..718 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:19 Download gff for BS11665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7132688..7133395 11..718 99   Plus

BS11665.5prime Sequence

732 bp (732 high quality bases) assembled on 2006-06-16

> BS11665.5prime
GAAGTTATCAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTT
TCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGC
TGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTC
AACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGC
AGCATCATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTG
CAGCGGCAGCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGA
GCAGCAGAGCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGG
AACTGGCCAAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAG
GCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGA
AGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCC
CGCGGCAGTGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAA
CATCAATTGCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGAC
AACGACAACGGCAACGGCAACGGCAATGGCAATGGCAACAACGTCGAAAG
CAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCC
AAGGGGGATTCGATTTAAAAGCTTTCTAGACC

BS11665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31629-PB 702 Pvf3-RB 1..702 17..718 3510 100 Plus
CG31629-PA 1449 Pvf3-RA 1..674 17..690 3370 100 Plus
CG7847-PB 2721 sr-RB 2620..2652 197..229 140 96.9 Plus
CG7847-PA 3561 sr-RA 3460..3492 197..229 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-RA 3486 CG34378-RA 133..811 17..695 3380 99.9 Plus
Pvf3-RE 2485 CG34378-RE 675..1347 17..689 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7132694..7133395 718..17 3510 100 Minus
Blast to na_te.dros performed 2015-02-10 21:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2870 542..656 221 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2421 537..654 219 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2883 173..654 215 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6854 539..660 211 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1171 530..626 203 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 506..660 195 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2255..2420 180..348 189 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6827 546..654 182 64.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7141..7226 570..654 157 66.3 Plus
TART-C 11124 TART-C TARTC 11124bp 8594..8679 570..654 157 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6917 530..654 155 60.6 Plus

BS11665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:48 Download gff for BS11665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31629-PB 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:21 Download gff for BS11665.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 17..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:33 Download gff for BS11665.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:33 Download gff for BS11665.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7132688..7133395 17..724 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:21 Download gff for BS11665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7132688..7133395 17..724 99   Minus

BS11665.complete Sequence

734 bp assembled on 2006-11-01

GenBank Submission: FJ636924

> BS11665.complete
GAAGTTATCAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTT
TCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGC
TGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTC
AACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGC
AGCATCATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTG
CAGCGGCAGCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGA
GCAGCAGAGCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGG
AACTGGCCAAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAG
GCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGA
AGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCC
CGCGGCAGTGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAA
CATCAATTGCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGAC
AACGACAACGGCAACGGCAACGGCAATGGCAATGGCAACAACGTCGAAAG
CAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCC
AAGGGGGATTCGATTTAAAAGCTTTCTAGACCAT

BS11665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-RA 1449 CG34378-PA 1..679 17..695 3380 99.9 Plus
Pvf3-RE 1410 CG34378-PE 1..673 17..689 3365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-RA 3486 CG34378-RA 133..811 17..695 3380 99.9 Plus
Pvf3-RE 2485 CG34378-RE 675..1347 17..689 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7132694..7133395 718..17 3510 100 Minus
Blast to na_te.dros performed 2014-11-26 21:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2870 542..656 221 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2421 537..654 219 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2883 173..654 215 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6854 539..660 211 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1171 530..626 203 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 506..660 195 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2255..2420 180..348 189 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6827 546..654 182 64.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7141..7226 570..654 157 66.3 Plus
TART-C 11124 TART-C TARTC 11124bp 8594..8679 570..654 157 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6917 530..654 155 60.6 Plus

BS11665.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:48 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:45 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 289..996 17..724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:30 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:49 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 289..996 17..724 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:58 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:58 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7132696..7133395 17..716 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:30 Download gff for BS11665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7132696..7133395 17..716 100   Minus

BS11665.pep Sequence

Translation from 16 to 717

> BS11665.pep
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSI*

BS11665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-PA 482 CG34378-PA 1..229 1..229 1178 99.1 Plus
Pvf3-PE 469 CG34378-PE 1..228 1..228 1166 98.7 Plus