Clone Sequence Records
BS11665.3prime Sequence
732 bp (732 high quality bases) assembled on 2006-06-16
> BS11665.3prime
ATGGTCTAGAAAGCTTTTAAATCGAATCCCCCTTGGATTCACTCACATCA
TTATCCTCCGATTTGGCATCATTGGGTTCCGTTGCTTTCGACGTTGTTGC
CATTGCCATTGCCGTTGCCGTTGCCGTTGTCGTTGTCAGCAGTTGTCGCT
GCTGTTGTCGTTGCGCCAGCAACTGCAATTGATGTTGCTCCTTCTGCCGC
CGATGGGCAATCTCGATTTGCTGCCACTGCCGCGGGGTGAAGGTCCCCTG
ATCGCCGGTTTCGATGGTGTGCAGCTCGAGATCTTCGTTATCGTACTCGT
TGTAGTGTAGTCTGCGCTTCTGCACCATCTTGGCCTTGTCATCGCCGAAA
CTCGGTGCCCGTCTAATGGGCTTCTTGGCCAGTTCCTTGGTGTGAGATTT
ATGCTGATGATGACGCACCGGCCGGCTCTGCTGCTCCGACTGCTCCGACT
GCTGCTCCTGCAGATGCTGCTGCAGCTGCCGCTGCAAGTCCAGCTCCCAC
GCCATCTGATGTTGCTGCAGGCGCAAATGATGCTGCTCGTGTCTCAGGCG
CAATTCCTCCTGCGGATTCCGGCGCGTTCTGGTTGAACTTTTATCACGTT
CTCGTCTGAAGTCATCAGGCAACACCTTCTGCCAGCCATTATTCTGAACA
TTAGCCTGCGCCTCCAGGCGAACAAAACTTAGGAAAATCAAGGCAAGCCG
CAGGGTATTTAACTGCATGTCGACTGATAACT
BS11665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31629-PB | 702 | Pvf3-RB | 1..702 | 718..17 | 3510 | 100 | Minus |
CG31629-PA | 1449 | Pvf3-RA | 1..674 | 718..45 | 3370 | 100 | Minus |
CG7847-PB | 2721 | sr-RB | 2620..2652 | 538..506 | 140 | 96.9 | Minus |
CG7847-PA | 3561 | sr-RA | 3460..3492 | 538..506 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 3486 | CG34378-RA | 133..811 | 718..40 | 3380 | 99.9 | Minus |
Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 718..46 | 3365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132694..7133395 | 17..718 | 3510 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 10:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 193..79 | 221 | 67 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 198..81 | 219 | 67.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 562..81 | 215 | 53.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 196..75 | 211 | 64.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 205..109 | 203 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 229..75 | 195 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 555..387 | 189 | 59.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 189..81 | 182 | 64.2 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 165..81 | 157 | 66.3 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 165..81 | 157 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 205..81 | 155 | 60.6 | Minus |
BS11665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:47 Download gff for
BS11665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31629-PB | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:19 Download gff for
BS11665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 33..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:38 Download gff for
BS11665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 33..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:38 Download gff for
BS11665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132688..7133395 | 11..718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:19 Download gff for
BS11665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132688..7133395 | 11..718 | 99 | | Plus |
BS11665.5prime Sequence
732 bp (732 high quality bases) assembled on 2006-06-16
> BS11665.5prime
GAAGTTATCAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTT
TCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGC
TGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTC
AACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGC
AGCATCATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTG
CAGCGGCAGCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGA
GCAGCAGAGCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGG
AACTGGCCAAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAG
GCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGA
AGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCC
CGCGGCAGTGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAA
CATCAATTGCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGAC
AACGACAACGGCAACGGCAACGGCAATGGCAATGGCAACAACGTCGAAAG
CAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCC
AAGGGGGATTCGATTTAAAAGCTTTCTAGACC
BS11665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31629-PB | 702 | Pvf3-RB | 1..702 | 17..718 | 3510 | 100 | Plus |
CG31629-PA | 1449 | Pvf3-RA | 1..674 | 17..690 | 3370 | 100 | Plus |
CG7847-PB | 2721 | sr-RB | 2620..2652 | 197..229 | 140 | 96.9 | Plus |
CG7847-PA | 3561 | sr-RA | 3460..3492 | 197..229 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 3486 | CG34378-RA | 133..811 | 17..695 | 3380 | 99.9 | Plus |
Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 17..689 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132694..7133395 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 542..656 | 221 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 537..654 | 219 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 173..654 | 215 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 539..660 | 211 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 530..626 | 203 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 506..660 | 195 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 180..348 | 189 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 546..654 | 182 | 64.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 570..654 | 157 | 66.3 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 570..654 | 157 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 530..654 | 155 | 60.6 | Plus |
BS11665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:48 Download gff for
BS11665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31629-PB | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:21 Download gff for
BS11665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:33 Download gff for
BS11665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:33 Download gff for
BS11665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132688..7133395 | 17..724 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:21 Download gff for
BS11665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132688..7133395 | 17..724 | 99 | | Minus |
BS11665.complete Sequence
734 bp assembled on 2006-11-01
GenBank Submission: FJ636924
> BS11665.complete
GAAGTTATCAGTCGACATGCAGTTAAATACCCTGCGGCTTGCCTTGATTT
TCCTAAGTTTTGTTCGCCTGGAGGCGCAGGCTAATGTTCAGAATAATGGC
TGGCAGAAGGTGTTGCCTGATGACTTCAGACGAGAACGTGATAAAAGTTC
AACCAGAACGCGCCGGAATCCGCAGGAGGAATTGCGCCTGAGACACGAGC
AGCATCATTTGCGCCTGCAGCAACATCAGATGGCGTGGGAGCTGGACTTG
CAGCGGCAGCTGCAGCAGCATCTGCAGGAGCAGCAGTCGGAGCAGTCGGA
GCAGCAGAGCCGGCCGGTGCGTCATCATCAGCATAAATCTCACACCAAGG
AACTGGCCAAGAAGCCCATTAGACGGGCACCGAGTTTCGGCGATGACAAG
GCCAAGATGGTGCAGAAGCGCAGACTACACTACAACGAGTACGATAACGA
AGATCTCGAGCTGCACACCATCGAAACCGGCGATCAGGGGACCTTCACCC
CGCGGCAGTGGCAGCAAATCGAGATTGCCCATCGGCGGCAGAAGGAGCAA
CATCAATTGCAGTTGCTGGCGCAACGACAACAGCAGCGACAACTGCTGAC
AACGACAACGGCAACGGCAACGGCAATGGCAATGGCAACAACGTCGAAAG
CAACGGAACCCAATGATGCCAAATCGGAGGATAATGATGTGAGTGAATCC
AAGGGGGATTCGATTTAAAAGCTTTCTAGACCAT
BS11665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 1449 | CG34378-PA | 1..679 | 17..695 | 3380 | 99.9 | Plus |
Pvf3-RE | 1410 | CG34378-PE | 1..673 | 17..689 | 3365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-RA | 3486 | CG34378-RA | 133..811 | 17..695 | 3380 | 99.9 | Plus |
Pvf3-RE | 2485 | CG34378-RE | 675..1347 | 17..689 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7132694..7133395 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2757..2870 | 542..656 | 221 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2421 | 537..654 | 219 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2883 | 173..654 | 215 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 539..660 | 211 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1171 | 530..626 | 203 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6878 | 506..660 | 195 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2255..2420 | 180..348 | 189 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6827 | 546..654 | 182 | 64.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7141..7226 | 570..654 | 157 | 66.3 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8594..8679 | 570..654 | 157 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6917 | 530..654 | 155 | 60.6 | Plus |
BS11665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:48 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:45 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 289..996 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:30 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:49 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RB | 289..996 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:58 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf3-RA | 133..817 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:58 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7132696..7133395 | 17..716 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:30 Download gff for
BS11665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7132696..7133395 | 17..716 | 100 | | Minus |
BS11665.pep Sequence
Translation from 16 to 717
> BS11665.pep
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRR
NPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRP
VRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELH
TIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTAT
ATAMAMATTSKATEPNDAKSEDNDVSESKGDSI*
BS11665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf3-PA | 482 | CG34378-PA | 1..229 | 1..229 | 1178 | 99.1 | Plus |
Pvf3-PE | 469 | CG34378-PE | 1..228 | 1..228 | 1166 | 98.7 | Plus |