BS11670.complete Sequence
1547 bp assembled on 2006-11-01
GenBank Submission: FJ636925
> BS11670.complete
GAAGTTATCAGTCGACATGCTGACGGACACGGAAGATGACTTCTTTTTCG
AAGAGGATAAGATGGGCATGACTGTCAGCACGAATGCTGTCGTCATTACA
AAGGATCAGAGCAACCTGATTGGCATCAGCATTGGGGGTGGAGCACCCAT
GTGTCCATGTCTGTATATCGTGCAGATCTTCGATGGAACACCCGCTGCTC
GTGAGGGATCCCTGCAATCAGGAGATGAACTGTTGGCTGTGAATTCGGTG
AGCGTGAAGGGCAAGACGAAAGTGGAGGTGGCCAAGATGATCCAGACGGC
CACCGACGAGGTGGTTATCCATTACAACAAGCTGCACGCCGATCCCGAAC
AGGGCAAGACACTGGATATCATCCTCAAGAAGCTGAAGCATCGGATTGTG
GACAATTTGTCGAGCAATACGGCGGATACGCTGGGTCTATCCCGCGCCAT
TCTGTGCAATGATTCGCTGGTCAAGCGACTGGAGGAGCTCGAGGGCACTG
AACTGATGTACAAAGGACTCGTAGAGCATGCTCGCCGGATGCTCAAGGCC
TACTACGATCTTCTGCAGACATATAAATCCTTTGGGGATTGCTTCACCCA
AATATCGGTCCATGAACCGCAACAGCGGGCATCGGAGGCGTTTCGAACGT
TTGGCGAGTTCCATCGCACCTTGGAGAAGGATGGCTTGGGCATCATCAAA
CAGATAAAGCCAGTGCTGGCCGATCTGGGAACGTATCTGAATAAAGCCAT
TCCGGACACAAAGCTCACGGTGCGTCGCTATGCGGATGCCAAGTTCACAT
ATCTTTCGTACTGCTTGAAGGTCAAGGAGATGGACGATGAGGAACATGGC
TTTGCTGCCCTGCAGGAGCCACTTTATCGCGTCGAAACGGGCAACTATGA
GTACCGTTTGATACTGCGATGTCGCCAGGATGCACGCAGCAAGTTCGCCA
AACTCCGCACCGATGTTCTCGAGAAGATGGAGCTGCTGGAATGCAAACAT
GCCATGGATCTGAACAAGCAGCTGCGAAGCCTGCTCGAAAGTTTGGCCGA
ACTTCATAGGAGTTTGGTGGATCGACTAGACTCGCTGCCACCGCTCTTTC
CCATCGAAGTGGACTTCAAGGAGACGGACTTTCAGTACAAGTCGAGTACC
CTGAAGCCGCAGGAGCTGGACGATGATGAAATCGAGGCCAACAATCATCC
GCATTCCACTCCTTCGCAAGTCGATTGCGGTTTCGAGGCTGTCGAACAGC
CGGCGGCAATTATAAATGTGGAAGCGGCCAAGGCGTCCGTTGATTCGTCC
ACCTTACAATCCGCCAGCGAGAACGAAACGTTGCTCAAGGAGCTGGGCCT
GTACGATGTGGATCTGCTCTCCAATCCGCAGACCATTAGCAACCAAAAGG
ACTCCATTGCTGCCCAAAATGATGGCTACGATTTCGACTTGTTCTTGAAC
CAGGCGACTGCAGCCACCACCAGTTTGGAGCGCGATCTCATGTCCTCGAA
TGCGGAGGAGATGGACCTGCTACTGCAATAGAAGCTTTCTAGACCAT
BS11670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PICK1-RA | 1515 | CG6167-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
| PICK1-RE | 1734 | CG6167-PE | 266..1734 | 63..1531 | 7345 | 100 | Plus |
| PICK1-RF | 1464 | CG6167-PF | 1..1464 | 68..1531 | 7320 | 100 | Plus |
| PICK1-RE | 1734 | CG6167-PE | 1..48 | 17..64 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PICK1-RA | 1694 | CG6167-RA | 84..1598 | 17..1531 | 7575 | 100 | Plus |
| PICK1-RE | 1913 | CG6167-RE | 349..1817 | 63..1531 | 7345 | 100 | Plus |
| PICK1-RF | 1865 | CG6167-RF | 302..1769 | 64..1531 | 7340 | 100 | Plus |
| PICK1-RE | 1913 | CG6167-RE | 84..131 | 17..64 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12697464..12698821 | 174..1531 | 6790 | 100 | Plus |
| 2L | 23513712 | 2L | 12696267..12696378 | 64..175 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 12695116..12695163 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:52:56 has no hits.
BS11670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:42 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PICK1-RA | 1..1515 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:39 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PICK1-RA | 79..1599 | 17..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:11 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PICK1-RA | 84..1598 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:42 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PICK1-RA | 79..1599 | 17..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:04 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PICK1-RA | 84..1598 | 17..1531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:04 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12695116..12695162 | 17..63 | 100 | -> | Plus |
| 2L | 12696267..12696378 | 64..175 | 100 | -> | Plus |
| 2L | 12697466..12698821 | 176..1531 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:11 Download gff for
BS11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12697466..12698821 | 176..1531 | 100 | | Plus |
| arm_2L | 12695116..12695162 | 17..63 | 100 | -> | Plus |
| arm_2L | 12696267..12696378 | 64..175 | 100 | -> | Plus |
BS11670.pep Sequence
Translation from 16 to 1530
> BS11670.pep
MLTDTEDDFFFEEDKMGMTVSTNAVVITKDQSNLIGISIGGGAPMCPCLY
IVQIFDGTPAAREGSLQSGDELLAVNSVSVKGKTKVEVAKMIQTATDEVV
IHYNKLHADPEQGKTLDIILKKLKHRIVDNLSSNTADTLGLSRAILCNDS
LVKRLEELEGTELMYKGLVEHARRMLKAYYDLLQTYKSFGDCFTQISVHE
PQQRASEAFRTFGEFHRTLEKDGLGIIKQIKPVLADLGTYLNKAIPDTKL
TVRRYADAKFTYLSYCLKVKEMDDEEHGFAALQEPLYRVETGNYEYRLIL
RCRQDARSKFAKLRTDVLEKMELLECKHAMDLNKQLRSLLESLAELHRSL
VDRLDSLPPLFPIEVDFKETDFQYKSSTLKPQELDDDEIEANNHPHSTPS
QVDCGFEAVEQPAAIINVEAAKASVDSSTLQSASENETLLKELGLYDVDL
LSNPQTISNQKDSIAAQNDGYDFDLFLNQATAATTSLERDLMSSNAEEMD
LLLQ*
BS11670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PICK1-PA | 504 | CG6167-PA | 1..504 | 1..504 | 2562 | 100 | Plus |
| PICK1-PE | 577 | CG6167-PE | 84..577 | 11..504 | 2491 | 99.2 | Plus |
| PICK1-PF | 487 | CG6167-PF | 1..487 | 18..504 | 2470 | 100 | Plus |
| PICK1-PD | 487 | CG6167-PD | 1..487 | 18..504 | 2470 | 100 | Plus |
| PICK1-PB | 487 | CG6167-PB | 1..487 | 18..504 | 2470 | 100 | Plus |
