Clone Sequence Records
BS11676.3prime Sequence
615 bp (615 high quality bases) assembled on 2006-06-16
> BS11676.3prime
ATGGTCTAGAAAGCTTCTAGACATTCAGGTAGTTGTCGGGGAATTCGAAG
GTAACATCGCGACCAGTCAGCTTCTTGTAGACCGAGGTGAAGGTGTCGAC
TTTGTGTTCAATGGTGGTCTGCTGGTTCTTGTCCAGGTGCACCTTGACCA
GCTGGGAGCCGTCCAGCTTGACGCGGATGCGCTTGCCCACAATCTCGGCG
GGGAAGACCAGATCCTCAAGGATGGCGTCGTACACAGCGGTCAGAGTCCT
GGAGCGTGGACGCTTCTGCTTGAGGGGGTTGCGGGCCTTGCGCGTGGGCT
TGGGCAGGATCTTGCGCTCCGCAATCACGACGACGTGCTTGCCCGAGAAC
TTCTTCTCCAGCTCGCGGACCAGGATGATCTGGATCTTCTGGAACACCTT
CTGCTGTGGAATGGGCACGTAGATGATGACGGCCTTCTTGCTGCCGAACT
CGATCTCGCGGGCACGGGTGATGTGCAGATCGCGCAGGTAGGGCTTCAGG
TCGCTGTTGGCCTCGAGTTCCACCAACGCCTGGGCAATGGACTTCTCGAA
GTCATCGGGATCCGAGCCGCCGGGCTTGATAATCTTGGAGCCGATAGCCA
TGTCGACTGATAACT
BS11676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PD | 585 | RpS7-RD | 1..585 | 601..17 | 2925 | 100 | Minus |
CG1883-PA | 585 | RpS7-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
CG1883-PC | 585 | RpS7-RC | 1..585 | 601..17 | 2925 | 100 | Minus |
CG1883-PB | 753 | RpS7-RB | 1..503 | 601..99 | 2515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..623 | 601..16 | 2930 | 100 | Minus |
RpS7-RC | 978 | CG1883-RC | 286..871 | 601..16 | 2930 | 100 | Minus |
RpS7-RA | 725 | CG1883-RA | 33..618 | 601..16 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30208091..30208427 | 99..435 | 1685 | 100 | Plus |
3R | 32079331 | 3R | 30208489..30208657 | 433..601 | 845 | 100 | Plus |
3R | 32079331 | 3R | 30206637..30206721 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:43 has no hits.
BS11676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:49 Download gff for
BS11676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PC | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:36 Download gff for
BS11676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 13..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:33 Download gff for
BS11676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 13..608 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:33 Download gff for
BS11676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30208490..30208657 | 434..601 | 100 | | Plus |
3R | 30206635..30206721 | 13..100 | 98 | <- | Plus |
3R | 30208093..30208425 | 101..433 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:36 Download gff for
BS11676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26034212..26034379 | 434..601 | 100 | | Plus |
arm_3R | 26032357..26032443 | 13..100 | 98 | <- | Plus |
arm_3R | 26033815..26034147 | 101..433 | 100 | <- | Plus |
BS11676.5prime Sequence
615 bp (615 high quality bases) assembled on 2006-06-16
> BS11676.5prime
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCTA
GAAGCTTTCTAGACC
BS11676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PD | 585 | RpS7-RD | 1..585 | 17..601 | 2925 | 100 | Plus |
CG1883-PA | 585 | RpS7-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG1883-PC | 585 | RpS7-RC | 1..585 | 17..601 | 2925 | 100 | Plus |
CG1883-PB | 753 | RpS7-RB | 1..503 | 17..519 | 2515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..623 | 17..602 | 2930 | 100 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..871 | 17..602 | 2930 | 100 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..618 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30208091..30208427 | 519..183 | 1685 | 100 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
3R | 32079331 | 3R | 30206637..30206721 | 602..518 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:50:25 has no hits.
BS11676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:50 Download gff for
BS11676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PC | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:15 Download gff for
BS11676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 10..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:56 Download gff for
BS11676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..620 | 10..605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:56 Download gff for
BS11676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30206635..30206721 | 518..605 | 98 | <- | Minus |
3R | 30208093..30208425 | 185..517 | 100 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:15 Download gff for
BS11676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26032357..26032443 | 518..605 | 98 | <- | Minus |
arm_3R | 26033815..26034147 | 185..517 | 100 | <- | Minus |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
BS11676.complete Sequence
617 bp assembled on 2006-11-01
GenBank Submission: FJ636926
> BS11676.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCTA
GAAGCTTTCTAGACCAT
BS11676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 585 | CG1883-PE | 1..585 | 17..601 | 2925 | 100 | Plus |
RpS7-RC | 585 | CG1883-PC | 1..585 | 17..601 | 2925 | 100 | Plus |
RpS7-RA | 585 | CG1883-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..623 | 17..602 | 2930 | 100 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..871 | 17..602 | 2930 | 100 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..618 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30208091..30208427 | 519..183 | 1685 | 100 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
3R | 32079331 | 3R | 30206637..30206721 | 602..518 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:18:35 has no hits.
BS11676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:43 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RC | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:40 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RC | 286..873 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:30 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..617 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:43 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RC | 286..873 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:04 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..617 | 17..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:04 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30206638..30206721 | 518..601 | 100 | <- | Minus |
3R | 30208093..30208425 | 185..517 | 100 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:30 Download gff for
BS11676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26032360..26032443 | 518..601 | 100 | <- | Minus |
arm_3R | 26033815..26034147 | 185..517 | 100 | <- | Minus |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
BS11676.pep Sequence
Translation from 16 to 600
> BS11676.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPDNYLNV*
BS11676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-PE | 194 | CG1883-PE | 1..194 | 1..194 | 974 | 100 | Plus |
RpS7-PC | 194 | CG1883-PC | 1..194 | 1..194 | 974 | 100 | Plus |
RpS7-PA | 194 | CG1883-PA | 1..194 | 1..194 | 974 | 100 | Plus |
RpS7-PD | 194 | CG1883-PD | 1..194 | 1..194 | 974 | 100 | Plus |