Clone BS11676 Report

Search the DGRC for BS11676

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptRpS7-RA
Protein status:BS11676.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11676.3prime Sequence

615 bp (615 high quality bases) assembled on 2006-06-16

> BS11676.3prime
ATGGTCTAGAAAGCTTCTAGACATTCAGGTAGTTGTCGGGGAATTCGAAG
GTAACATCGCGACCAGTCAGCTTCTTGTAGACCGAGGTGAAGGTGTCGAC
TTTGTGTTCAATGGTGGTCTGCTGGTTCTTGTCCAGGTGCACCTTGACCA
GCTGGGAGCCGTCCAGCTTGACGCGGATGCGCTTGCCCACAATCTCGGCG
GGGAAGACCAGATCCTCAAGGATGGCGTCGTACACAGCGGTCAGAGTCCT
GGAGCGTGGACGCTTCTGCTTGAGGGGGTTGCGGGCCTTGCGCGTGGGCT
TGGGCAGGATCTTGCGCTCCGCAATCACGACGACGTGCTTGCCCGAGAAC
TTCTTCTCCAGCTCGCGGACCAGGATGATCTGGATCTTCTGGAACACCTT
CTGCTGTGGAATGGGCACGTAGATGATGACGGCCTTCTTGCTGCCGAACT
CGATCTCGCGGGCACGGGTGATGTGCAGATCGCGCAGGTAGGGCTTCAGG
TCGCTGTTGGCCTCGAGTTCCACCAACGCCTGGGCAATGGACTTCTCGAA
GTCATCGGGATCCGAGCCGCCGGGCTTGATAATCTTGGAGCCGATAGCCA
TGTCGACTGATAACT

BS11676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PD 585 RpS7-RD 1..585 601..17 2925 100 Minus
CG1883-PA 585 RpS7-RA 1..585 601..17 2925 100 Minus
CG1883-PC 585 RpS7-RC 1..585 601..17 2925 100 Minus
CG1883-PB 753 RpS7-RB 1..503 601..99 2515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..623 601..16 2930 100 Minus
RpS7-RC 978 CG1883-RC 286..871 601..16 2930 100 Minus
RpS7-RA 725 CG1883-RA 33..618 601..16 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30208091..30208427 99..435 1685 100 Plus
3R 32079331 3R 30208489..30208657 433..601 845 100 Plus
3R 32079331 3R 30206637..30206721 16..100 425 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:17:43 has no hits.

BS11676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:49 Download gff for BS11676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PC 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:36 Download gff for BS11676.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 13..608 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:33 Download gff for BS11676.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 13..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:33 Download gff for BS11676.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30208490..30208657 434..601 100   Plus
3R 30206635..30206721 13..100 98 <- Plus
3R 30208093..30208425 101..433 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:36 Download gff for BS11676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26034212..26034379 434..601 100   Plus
arm_3R 26032357..26032443 13..100 98 <- Plus
arm_3R 26033815..26034147 101..433 100 <- Plus

BS11676.5prime Sequence

615 bp (615 high quality bases) assembled on 2006-06-16

> BS11676.5prime
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCTA
GAAGCTTTCTAGACC

BS11676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PD 585 RpS7-RD 1..585 17..601 2925 100 Plus
CG1883-PA 585 RpS7-RA 1..585 17..601 2925 100 Plus
CG1883-PC 585 RpS7-RC 1..585 17..601 2925 100 Plus
CG1883-PB 753 RpS7-RB 1..503 17..519 2515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..623 17..602 2930 100 Plus
RpS7-RC 978 CG1883-RC 286..871 17..602 2930 100 Plus
RpS7-RA 725 CG1883-RA 33..618 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30208091..30208427 519..183 1685 100 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
3R 32079331 3R 30206637..30206721 602..518 425 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:50:25 has no hits.

BS11676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:50 Download gff for BS11676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PC 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:15 Download gff for BS11676.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 10..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:56 Download gff for BS11676.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..620 10..605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:56 Download gff for BS11676.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30206635..30206721 518..605 98 <- Minus
3R 30208093..30208425 185..517 100 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:15 Download gff for BS11676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26032357..26032443 518..605 98 <- Minus
arm_3R 26033815..26034147 185..517 100 <- Minus
arm_3R 26034212..26034379 17..184 100   Minus

BS11676.complete Sequence

617 bp assembled on 2006-11-01

GenBank Submission: FJ636926

> BS11676.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTGGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTCGACACCTTCACCTCGGTCTACAAGAAGCTG
ACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGAATGTCTA
GAAGCTTTCTAGACCAT

BS11676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 585 CG1883-PE 1..585 17..601 2925 100 Plus
RpS7-RC 585 CG1883-PC 1..585 17..601 2925 100 Plus
RpS7-RA 585 CG1883-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..623 17..602 2930 100 Plus
RpS7-RC 978 CG1883-RC 286..871 17..602 2930 100 Plus
RpS7-RA 725 CG1883-RA 33..618 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30208091..30208427 519..183 1685 100 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
3R 32079331 3R 30206637..30206721 602..518 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:18:35 has no hits.

BS11676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:43 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RC 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:40 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RC 286..873 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:30 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..617 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:43 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RC 286..873 17..605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:04 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..617 17..601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:04 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30206638..30206721 518..601 100 <- Minus
3R 30208093..30208425 185..517 100 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:30 Download gff for BS11676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26032360..26032443 518..601 100 <- Minus
arm_3R 26033815..26034147 185..517 100 <- Minus
arm_3R 26034212..26034379 17..184 100   Minus

BS11676.pep Sequence

Translation from 16 to 600

> BS11676.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPDNYLNV*

BS11676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-PE 194 CG1883-PE 1..194 1..194 974 100 Plus
RpS7-PC 194 CG1883-PC 1..194 1..194 974 100 Plus
RpS7-PA 194 CG1883-PA 1..194 1..194 974 100 Plus
RpS7-PD 194 CG1883-PD 1..194 1..194 974 100 Plus