BS11680.complete Sequence
1487 bp assembled on 2006-11-01
GenBank Submission: FJ636927
> BS11680.complete
GAAGTTATCAGTCGACATGTCACACAAAATAAGCGAATATTTCGCAAATG
ATCCGCCCAGTTTCTTCGATGAGCTGGCCAGCAAACCCAAGGGCAACAAC
TTGTCAACAGAAGGGAGTTCCAGCAGCGCCAGTAGCACCAGTTCCGCCCC
AAACATGATGTCCAACACCTTCGTCGGGTTCTTCCAACCTCCTGAATATG
TTGAGACACCTGAGGCAGGAGAGGATTCTATAAAAGTCGGTGACGACGTA
AGAAATCTGTGGGAGTTGCCGCGGGAAAACGAGCCCGGTAAACTTATTAT
GCCGGGCATCCATCTGCAAACTGACTTGGCAGATCCCATCAGCGTGGCGG
TGACTCAACACCTCGGAGAGGCCGAGTTGTCCTACCGCAAGATCCTTCGC
GTCGATGATGTCACCCAGGACGAGCGCGGCTTGAGAACACTAATCCACGC
CGGTTGCTATCGCACTGCCGTGAATCTTACGGGCCGTCTTCTGACCATTT
ACGGTCAGGGTTACGGGCGATCTGGTCAGCCAGCAAAGCATTCGCCCCAC
TCCCTGCAACTGTGGTTCACGCGCCTCGCGCTGCTTGCCAAGTTGGGCGA
GTTTGAGCTGCTGAATGCCGAGGCAGAACCTTTTGGCCAACTTACCAGCC
CCGATGTCTTCTACGACTTCTATCCGGAGATGTACAACGGGAAAAGTGGA
TCCATAGCCTGTTTTTCCTTCCGGCTCTTGCTTGCAGAGCTGCCCATATA
TCTGGGTAAACCCCATGTCGCCCTGGACAGACTTTCAGAACTTCATGTGA
CCACGCGGGAAATCAAGGAGCACTATTTAAGTCTGCACAACAAGGCGGCA
GAGGAGTTTTGGCAAAGGCGATGCGAACGGGTTTTGCATTCAATCATCAA
CTGTGGATTGATGATGAAGAAATTCAGTATGATAGACGACATAATGGAGG
GAACGCTTTTAAAGCGCTCCAACCTGAGCAAGGAGGATCGGCGATCCTTG
TACTCCGCTTGGGGCCGCATTTATCTGCAAATTGGTGACATATTTGGAGC
GGAGCAGAAGATTGCCGTCTCGAGGAGATTAAGGGAGATAAACTCCGCGC
CTGATCTCAGAGACTTGGTCGATAAGGGATTAATAGCTGTGGCCAAGAAC
GACTTTCCCGAGGCCTATGTGATATTCCAGAAAGCTCTGCACCTGGACAC
CGGCAACACAATGATCCTGAACAACATGGGAGTGTGCCTTCTCTACGCCG
GAAAGCTAAAGGATGCTATAAATCTGTACGAGCGCGCTATCAACCTGAAT
CCCCAGAAGTCCCTCAACGAGAGTTTGCTGGTCAATCTCTCGACGCTGTA
TGAACTGGAATCAAACAACTCCAAGGCGAAAAAGTACAACTTACTGCGCC
TAATTAACAGATACAAACCGGATCTCAACATAAGCATAGAAATTTGTCTA
AAATTGCAGACGATAAATTAAAAGCTTTCTAGACCAT
BS11680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11396-RA | 1455 | CG11396-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11396-RA | 1601 | CG11396-RA | 33..1491 | 14..1472 | 7295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20787129..20787714 | 913..328 | 2930 | 100 | Minus |
| 3L | 28110227 | 3L | 20786450..20786832 | 1472..1090 | 1915 | 100 | Minus |
| 3L | 28110227 | 3L | 20787790..20788105 | 329..14 | 1580 | 100 | Minus |
| 3L | 28110227 | 3L | 20786889..20787065 | 1089..913 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:27:56 has no hits.
BS11680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:45 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11396-RA | 1..1455 | 17..1471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:44 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11396-RA | 30..1488 | 14..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:51 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11396-RA | 36..1488 | 17..1469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:45 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11396-RA | 30..1488 | 14..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:13 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11396-RA | 36..1488 | 17..1469 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:13 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20786453..20786832 | 1090..1469 | 100 | <- | Minus |
| 3L | 20786889..20787064 | 914..1089 | 100 | <- | Minus |
| 3L | 20787129..20787713 | 329..913 | 100 | <- | Minus |
| 3L | 20787791..20788102 | 17..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:51 Download gff for
BS11680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20779553..20779932 | 1090..1469 | 100 | <- | Minus |
| arm_3L | 20779989..20780164 | 914..1089 | 100 | <- | Minus |
| arm_3L | 20780229..20780813 | 329..913 | 100 | <- | Minus |
| arm_3L | 20780891..20781202 | 17..328 | 100 | | Minus |
BS11680.pep Sequence
Translation from 16 to 1470
> BS11680.pep
MSHKISEYFANDPPSFFDELASKPKGNNLSTEGSSSSASSTSSAPNMMSN
TFVGFFQPPEYVETPEAGEDSIKVGDDVRNLWELPRENEPGKLIMPGIHL
QTDLADPISVAVTQHLGEAELSYRKILRVDDVTQDERGLRTLIHAGCYRT
AVNLTGRLLTIYGQGYGRSGQPAKHSPHSLQLWFTRLALLAKLGEFELLN
AEAEPFGQLTSPDVFYDFYPEMYNGKSGSIACFSFRLLLAELPIYLGKPH
VALDRLSELHVTTREIKEHYLSLHNKAAEEFWQRRCERVLHSIINCGLMM
KKFSMIDDIMEGTLLKRSNLSKEDRRSLYSAWGRIYLQIGDIFGAEQKIA
VSRRLREINSAPDLRDLVDKGLIAVAKNDFPEAYVIFQKALHLDTGNTMI
LNNMGVCLLYAGKLKDAINLYERAINLNPQKSLNESLLVNLSTLYELESN
NSKAKKYNLLRLINRYKPDLNISIEICLKLQTIN*
BS11680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11396-PA | 484 | CG11396-PA | 1..484 | 1..484 | 2500 | 100 | Plus |
