Clone Sequence Records
BS11681.3prime Sequence
800 bp (799 high quality bases) assembled on 2006-06-16
> BS11681.3prime
ATGGTCTAGAAAGCTTTTAATACAAACTAGTCTTCTTCATGATTCGCAGA
AATTCTTCTTGATTTACCTCCCCGTCATTGTCCAAATCGGCTTCGTCTAT
CATCTCTCGCAGTTCCTCGTCAGTAAGTGTTTCACCAAGTTCACGAGCCA
CCCTCTTTAGATTTCTGAATGAAATTTTTCCAGTGTCATCATCATCAAAA
AGCCGAAAAGCCTTAAGAATCTCTTCCTTAGTGTCCTTTTCGGCCATCTT
TATAGTCATCAGTTGCAGAAAGACGTTAAACGCAATGCGCCCACTGCAGT
CCTTGTCAATGTCGGAAATCATCCTCTTAATCTCCTCCTTTTTTGGCTCG
AATCCCAGAGCCCTAATGGCCACCTTAAGTTCCTTTACCTCAATGTAACC
CGTGCCTTCGTTGTCAAATAGATCAAAGGCCTCCTTAATGTCGCATTTTT
GGGCCTCAGACAGTTCGAACTTGGGGCCAGACTTCTTGCGACCTTGTTGC
GTACCCCTTTTGGCAGGAACTGTAGCAGGGTTGGCGTTGCCAGCCGCAGT
TGAGTTTTGCTCCATTAATCGATTGGGTAATTTCAGATGTTGGTATAAGT
TCTTGATATACGTCGCATAGACTATACGAGTGAGGGTTGATTTGTCGGAT
GCTCCTATTTTTGTTATAATATATATAAACATGAAGAGCTCTACACAGCC
CACCCTATTCCTAGCGCAACACACAAGTTTACGGTTCACGATTACAAGAA
AGCCATATCTTTCGTTTGTGAAACAGCTCAAATAAAGCCGACTAGAATGC
BS11681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-PA | 828 | CG17493-RA | 45..828 | 800..17 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RD | 5997 | CG17493-RD | 26..810 | 800..16 | 3925 | 100 | Minus |
CG17493-RC | 1364 | CG17493-RC | 26..810 | 800..16 | 3925 | 100 | Minus |
CG17493-RB | 1663 | CG17493-RB | 202..986 | 800..16 | 3925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22550548..22551108 | 576..16 | 2805 | 100 | Minus |
2L | 23513712 | 2L | 22550265..22550488 | 800..577 | 1120 | 100 | Minus |
2L | 23513712 | 2L | 18208799..18209013 | 228..442 | 190 | 72.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:05:13 has no hits.
BS11681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:51 Download gff for
BS11681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-PA | 45..828 | 17..800 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:35 Download gff for
BS11681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 202..990 | 13..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:52 Download gff for
BS11681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 202..990 | 13..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:52 Download gff for
BS11681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22550265..22550488 | 577..800 | 100 | -> | Minus |
2L | 22550548..22551112 | 13..576 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:35 Download gff for
BS11681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22442997..22443220 | 577..800 | 100 | -> | Minus |
arm_2L | 22443280..22443844 | 13..576 | 99 | | Minus |
BS11681.5prime Sequence
773 bp (743 high quality bases) assembled on 2006-06-16
> BS11681.5prime
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCG
BS11681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-PA | 828 | CG17493-RA | 1..757 | 17..773 | 3785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RB | 1663 | CG17493-RB | 158..914 | 17..773 | 3785 | 100 | Plus |
CG17493-RD | 5997 | CG17493-RD | 1..738 | 36..773 | 3690 | 100 | Plus |
CG17493-RC | 1364 | CG17493-RC | 1..738 | 36..773 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22550548..22551036 | 285..773 | 2445 | 100 | Plus |
2L | 23513712 | 2L | 22550221..22550488 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 18208799..18209013 | 633..419 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:13:09 has no hits.
BS11681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:51 Download gff for
BS11681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-PA | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:52 Download gff for
BS11681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 152..914 | 11..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:31 Download gff for
BS11681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 152..914 | 11..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:31 Download gff for
BS11681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22550215..22550488 | 11..284 | 98 | -> | Plus |
2L | 22550548..22551036 | 285..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:52 Download gff for
BS11681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22442947..22443220 | 11..284 | 98 | -> | Plus |
arm_2L | 22443280..22443768 | 285..773 | 100 | | Plus |
BS11681.complete Sequence
860 bp assembled on 2006-11-01
GenBank Submission: FJ636928
> BS11681.complete
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATC
AAGAAGAATTTCTGCGAATCATGAAGAAGACTAGTTTGTATTAAAAGCTT
TCTAGACCAT
BS11681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RD | 549 | CG17493-PD | 1..549 | 296..844 | 2745 | 100 | Plus |
CG17493-RC | 549 | CG17493-PC | 1..549 | 296..844 | 2745 | 100 | Plus |
CG17493-RB | 549 | CG17493-PB | 1..549 | 296..844 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-RB | 1663 | CG17493-RB | 158..986 | 17..845 | 4145 | 100 | Plus |
CG17493-RD | 5997 | CG17493-RD | 1..810 | 36..845 | 4050 | 100 | Plus |
CG17493-RC | 1364 | CG17493-RC | 1..810 | 36..845 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22550548..22551108 | 285..845 | 2805 | 100 | Plus |
2L | 23513712 | 2L | 22550221..22550488 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 18208799..18209013 | 633..419 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:23:51 has no hits.
BS11681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:41 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:30 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RA | 102..940 | 11..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:22 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 164..983 | 23..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:41 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RA | 102..940 | 11..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:46 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17493-RB | 164..983 | 23..842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:46 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22550227..22550488 | 23..284 | 100 | -> | Plus |
2L | 22550548..22551105 | 285..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:22 Download gff for
BS11681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22442959..22443220 | 23..284 | 100 | -> | Plus |
arm_2L | 22443280..22443837 | 285..842 | 100 | | Plus |
BS11681.pep Sequence
Translation from 16 to 843
> BS11681.pep
MFHKCEQALNIVFFWHSSRLYLSCFTNERYGFLVIVNRKLVCCARNRVGC
VELFMFIYIITKIGASDKSTLTRIVYATYIKNLYQHLKLPNRLMEQNSTA
AGNANPATVPAKRGTQQGRKKSGPKFELSEAQKCDIKEAFDLFDNEGTGY
IEVKELKVAIRALGFEPKKEEIKRMISDIDKDCSGRIAFNVFLQLMTIKM
AEKDTKEEILKAFRLFDDDDTGKISFRNLKRVARELGETLTDEELREMID
EADLDNDGEVNQEEFLRIMKKTSLY*
BS11681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17493-PD | 182 | CG17493-PD | 1..182 | 94..275 | 921 | 100 | Plus |
CG17493-PC | 182 | CG17493-PC | 1..182 | 94..275 | 921 | 100 | Plus |
CG17493-PB | 182 | CG17493-PB | 1..182 | 94..275 | 921 | 100 | Plus |
CG31802-PA | 186 | CG31802-PA | 5..185 | 92..274 | 547 | 60.7 | Plus |
Cam-PD | 149 | CG8472-PD | 4..146 | 127..269 | 346 | 49.7 | Plus |