Clone BS11681 Report

Search the DGRC for BS11681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG17493-RB
Protein status:BS11681.pep: gold
Sequenced Size:16

Clone Sequence Records

BS11681.3prime Sequence

800 bp (799 high quality bases) assembled on 2006-06-16

> BS11681.3prime
ATGGTCTAGAAAGCTTTTAATACAAACTAGTCTTCTTCATGATTCGCAGA
AATTCTTCTTGATTTACCTCCCCGTCATTGTCCAAATCGGCTTCGTCTAT
CATCTCTCGCAGTTCCTCGTCAGTAAGTGTTTCACCAAGTTCACGAGCCA
CCCTCTTTAGATTTCTGAATGAAATTTTTCCAGTGTCATCATCATCAAAA
AGCCGAAAAGCCTTAAGAATCTCTTCCTTAGTGTCCTTTTCGGCCATCTT
TATAGTCATCAGTTGCAGAAAGACGTTAAACGCAATGCGCCCACTGCAGT
CCTTGTCAATGTCGGAAATCATCCTCTTAATCTCCTCCTTTTTTGGCTCG
AATCCCAGAGCCCTAATGGCCACCTTAAGTTCCTTTACCTCAATGTAACC
CGTGCCTTCGTTGTCAAATAGATCAAAGGCCTCCTTAATGTCGCATTTTT
GGGCCTCAGACAGTTCGAACTTGGGGCCAGACTTCTTGCGACCTTGTTGC
GTACCCCTTTTGGCAGGAACTGTAGCAGGGTTGGCGTTGCCAGCCGCAGT
TGAGTTTTGCTCCATTAATCGATTGGGTAATTTCAGATGTTGGTATAAGT
TCTTGATATACGTCGCATAGACTATACGAGTGAGGGTTGATTTGTCGGAT
GCTCCTATTTTTGTTATAATATATATAAACATGAAGAGCTCTACACAGCC
CACCCTATTCCTAGCGCAACACACAAGTTTACGGTTCACGATTACAAGAA
AGCCATATCTTTCGTTTGTGAAACAGCTCAAATAAAGCCGACTAGAATGC

BS11681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PA 828 CG17493-RA 45..828 800..17 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RD 5997 CG17493-RD 26..810 800..16 3925 100 Minus
CG17493-RC 1364 CG17493-RC 26..810 800..16 3925 100 Minus
CG17493-RB 1663 CG17493-RB 202..986 800..16 3925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551108 576..16 2805 100 Minus
2L 23513712 2L 22550265..22550488 800..577 1120 100 Minus
2L 23513712 2L 18208799..18209013 228..442 190 72.6 Plus
Blast to na_te.dros performed on 2015-02-10 18:05:13 has no hits.

BS11681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:51 Download gff for BS11681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-PA 45..828 17..800 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:35 Download gff for BS11681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 202..990 13..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:52 Download gff for BS11681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 202..990 13..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:52 Download gff for BS11681.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22550265..22550488 577..800 100 -> Minus
2L 22550548..22551112 13..576 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:35 Download gff for BS11681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442997..22443220 577..800 100 -> Minus
arm_2L 22443280..22443844 13..576 99   Minus

BS11681.5prime Sequence

773 bp (743 high quality bases) assembled on 2006-06-16

> BS11681.5prime
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCG

BS11681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PA 828 CG17493-RA 1..757 17..773 3785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RB 1663 CG17493-RB 158..914 17..773 3785 100 Plus
CG17493-RD 5997 CG17493-RD 1..738 36..773 3690 100 Plus
CG17493-RC 1364 CG17493-RC 1..738 36..773 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551036 285..773 2445 100 Plus
2L 23513712 2L 22550221..22550488 17..284 1340 100 Plus
2L 23513712 2L 18208799..18209013 633..419 190 72.6 Minus
Blast to na_te.dros performed on 2015-02-08 12:13:09 has no hits.

BS11681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:51 Download gff for BS11681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-PA 1..757 17..773 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:52 Download gff for BS11681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 152..914 11..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:31 Download gff for BS11681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 152..914 11..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:31 Download gff for BS11681.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22550215..22550488 11..284 98 -> Plus
2L 22550548..22551036 285..773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:52 Download gff for BS11681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442947..22443220 11..284 98 -> Plus
arm_2L 22443280..22443768 285..773 100   Plus

BS11681.complete Sequence

860 bp assembled on 2006-11-01

GenBank Submission: FJ636928

> BS11681.complete
GAAGTTATCAGTCGACATGTTTCACAAGTGTGAACAGGCCTTAAACATTG
TGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAGCTGTTTCACAAACGAA
AGATATGGCTTTCTTGTAATCGTGAACCGTAAACTTGTGTGTTGCGCTAG
GAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTTATATATATTATAACAA
AAATAGGAGCATCCGACAAATCAACCCTCACTCGTATAGTCTATGCGACG
TATATCAAGAACTTATACCAACATCTGAAATTACCCAATCGATTAATGGA
GCAAAACTCAACTGCGGCTGGCAACGCCAACCCTGCTACAGTTCCTGCCA
AAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGGCCCCAAGTTCGAACTG
TCTGAGGCCCAAAAATGCGACATTAAGGAGGCCTTTGATCTATTTGACAA
CGAAGGCACGGGTTACATTGAGGTAAAGGAACTTAAGGTGGCCATTAGGG
CTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAAGAGGATGATTTCCGAC
ATTGACAAGGACTGCAGTGGGCGCATTGCGTTTAACGTCTTTCTGCAACT
GATGACTATAAAGATGGCCGAAAAGGACACTAAGGAAGAGATTCTTAAGG
CTTTTCGGCTTTTTGATGATGATGACACTGGAAAAATTTCATTCAGAAAT
CTAAAGAGGGTGGCTCGTGAACTTGGTGAAACACTTACTGACGAGGAACT
GCGAGAGATGATAGACGAAGCCGATTTGGACAATGACGGGGAGGTAAATC
AAGAAGAATTTCTGCGAATCATGAAGAAGACTAGTTTGTATTAAAAGCTT
TCTAGACCAT

BS11681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RD 549 CG17493-PD 1..549 296..844 2745 100 Plus
CG17493-RC 549 CG17493-PC 1..549 296..844 2745 100 Plus
CG17493-RB 549 CG17493-PB 1..549 296..844 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-RB 1663 CG17493-RB 158..986 17..845 4145 100 Plus
CG17493-RD 5997 CG17493-RD 1..810 36..845 4050 100 Plus
CG17493-RC 1364 CG17493-RC 1..810 36..845 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22550548..22551108 285..845 2805 100 Plus
2L 23513712 2L 22550221..22550488 17..284 1340 100 Plus
2L 23513712 2L 18208799..18209013 633..419 190 72.6 Minus
Blast to na_te.dros performed on 2014-11-28 00:23:51 has no hits.

BS11681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:48:41 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:30 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 102..940 11..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:22 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 164..983 23..842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:48:41 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RA 102..940 11..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:46 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
CG17493-RB 164..983 23..842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:46 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22550227..22550488 23..284 100 -> Plus
2L 22550548..22551105 285..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:22 Download gff for BS11681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22442959..22443220 23..284 100 -> Plus
arm_2L 22443280..22443837 285..842 100   Plus

BS11681.pep Sequence

Translation from 16 to 843

> BS11681.pep
MFHKCEQALNIVFFWHSSRLYLSCFTNERYGFLVIVNRKLVCCARNRVGC
VELFMFIYIITKIGASDKSTLTRIVYATYIKNLYQHLKLPNRLMEQNSTA
AGNANPATVPAKRGTQQGRKKSGPKFELSEAQKCDIKEAFDLFDNEGTGY
IEVKELKVAIRALGFEPKKEEIKRMISDIDKDCSGRIAFNVFLQLMTIKM
AEKDTKEEILKAFRLFDDDDTGKISFRNLKRVARELGETLTDEELREMID
EADLDNDGEVNQEEFLRIMKKTSLY*

BS11681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17493-PD 182 CG17493-PD 1..182 94..275 921 100 Plus
CG17493-PC 182 CG17493-PC 1..182 94..275 921 100 Plus
CG17493-PB 182 CG17493-PB 1..182 94..275 921 100 Plus
CG31802-PA 186 CG31802-PA 5..185 92..274 547 60.7 Plus
Cam-PD 149 CG8472-PD 4..146 127..269 346 49.7 Plus