Clone BS11682 Report

Search the DGRC for BS11682

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptRipalpha-RA
Protein status:BS11682.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11682.3prime Sequence

624 bp (624 high quality bases) assembled on 2006-06-16

> BS11682.3prime
ATGGTCTAGAAAGCTTCTAGACGGAGGAGAAGTAGTCGCAGCTGCCGCAC
ATGTCGTATAGTTGTCCCGAAGCGGGTTCGATGAAAAATCGCAGGGCCTG
AGTGCACTGAAGTTCATGGCTGGCGATTTGTTGTTGCAGCAGTATCTGCA
GCTGTTCCATGTTCGCAGAGTGCTCGAAGCGGATGCCACACTCGCAGATG
AAGGCACCTTTGTGATGGCGTAGGTTTTTAATCTGACAAACTGGGCATAA
AACCTCCTTTTGCTGCTCATCGGGCTCTGCGTATAGCGTTTCCAGATTCT
TTTCGCCCAGGGCATACCACTCGTTGACATCGGATAGTAGCTCCTCCAGA
ATCAGCTCCTCAAGCTCCACATCCTTCTCTAGCTCACTGAGTTCCAGGCG
CAGGATTTCCCTGAGTTCGGACAATTGGATTTCTCGTTGGGCATCCGTGC
ATCTATTGCGCGTTTCTATGATGCGCTTGCGGTATTTCTCTCGCAGCATT
TCGCGAAGTCTTGGCATTTGGTTGCCCATCCGCTGTCTTTTGGCCACTTC
TTGAGCATGCCGCTTTTGCTCCACGGAGGTGCGATAAACCGGGCTTTGAG
TGGAGTTCATGTCGACTGATAACT

BS11682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18145-PA 594 Ripalpha-RA 1..594 610..17 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1259 CG18145-RA 231..828 614..17 2975 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199832..10200237 17..422 2030 100 Plus
2L 23513712 2L 10200416..10200542 488..614 620 99.2 Plus
2L 23513712 2L 10200291..10200358 422..489 340 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:05:29 has no hits.

BS11682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:52 Download gff for BS11682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18145-PA 1..594 17..610 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:37 Download gff for BS11682.3prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..828 17..620 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:35 Download gff for BS11682.3prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..828 17..620 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:35 Download gff for BS11682.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10200416..10200548 488..620 96   Plus
2L 10199832..10200236 17..421 100 <- Plus
2L 10200291..10200356 422..487 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:37 Download gff for BS11682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10199832..10200236 17..421 100 <- Plus
arm_2L 10200291..10200356 422..487 100 <- Plus
arm_2L 10200416..10200548 488..620 96   Plus

BS11682.5prime Sequence

624 bp (624 high quality bases) assembled on 2006-06-16

> BS11682.5prime
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCTAGAAGCTTTCTAGACC

BS11682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18145-PA 594 Ripalpha-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1259 CG18145-RA 231..828 13..610 2975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199832..10200237 610..205 2030 100 Minus
2L 23513712 2L 10200416..10200542 139..13 620 99.2 Minus
2L 23513712 2L 10200291..10200358 205..138 340 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:50:44 has no hits.

BS11682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:52 Download gff for BS11682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18145-PA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:20 Download gff for BS11682.5prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..828 7..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:59 Download gff for BS11682.5prime
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 225..828 7..610 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:59 Download gff for BS11682.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10199832..10200236 206..610 100 <- Minus
2L 10200291..10200356 140..205 100 <- Minus
2L 10200416..10200548 7..139 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:20 Download gff for BS11682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10199832..10200236 206..610 100 <- Minus
arm_2L 10200291..10200356 140..205 100 <- Minus
arm_2L 10200416..10200548 7..139 96   Minus

BS11682.complete Sequence

626 bp assembled on 2006-11-01

GenBank Submission: FJ636929

> BS11682.complete
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCTAGAAGCTTTCTAGACCAT

BS11682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 594 CG18145-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-RA 1259 CG18145-RA 231..828 13..610 2975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10199832..10200237 610..205 2030 100 Minus
2L 23513712 2L 10200416..10200542 139..13 620 99.2 Minus
2L 23513712 2L 10200291..10200358 205..138 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:54 has no hits.

BS11682.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:59 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 1..594 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:22 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 223..826 7..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:15 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 235..828 17..610 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:59 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 223..826 7..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:19 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
Ripalpha-RA 235..828 17..610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:19 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10199832..10200236 206..610 100 <- Minus
2L 10200291..10200356 140..205 100 <- Minus
2L 10200416..10200538 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:15 Download gff for BS11682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10199832..10200236 206..610 100 <- Minus
arm_2L 10200291..10200356 140..205 100 <- Minus
arm_2L 10200416..10200538 17..139 100   Minus

BS11682.pep Sequence

Translation from 16 to 609

> BS11682.pep
MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET
RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA
LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN
MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSV*

BS11682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ripalpha-PA 197 CG18145-PA 1..197 1..197 1019 100 Plus