Clone Sequence Records
BS11682.3prime Sequence
624 bp (624 high quality bases) assembled on 2006-06-16
> BS11682.3prime
ATGGTCTAGAAAGCTTCTAGACGGAGGAGAAGTAGTCGCAGCTGCCGCAC
ATGTCGTATAGTTGTCCCGAAGCGGGTTCGATGAAAAATCGCAGGGCCTG
AGTGCACTGAAGTTCATGGCTGGCGATTTGTTGTTGCAGCAGTATCTGCA
GCTGTTCCATGTTCGCAGAGTGCTCGAAGCGGATGCCACACTCGCAGATG
AAGGCACCTTTGTGATGGCGTAGGTTTTTAATCTGACAAACTGGGCATAA
AACCTCCTTTTGCTGCTCATCGGGCTCTGCGTATAGCGTTTCCAGATTCT
TTTCGCCCAGGGCATACCACTCGTTGACATCGGATAGTAGCTCCTCCAGA
ATCAGCTCCTCAAGCTCCACATCCTTCTCTAGCTCACTGAGTTCCAGGCG
CAGGATTTCCCTGAGTTCGGACAATTGGATTTCTCGTTGGGCATCCGTGC
ATCTATTGCGCGTTTCTATGATGCGCTTGCGGTATTTCTCTCGCAGCATT
TCGCGAAGTCTTGGCATTTGGTTGCCCATCCGCTGTCTTTTGGCCACTTC
TTGAGCATGCCGCTTTTGCTCCACGGAGGTGCGATAAACCGGGCTTTGAG
TGGAGTTCATGTCGACTGATAACT
BS11682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18145-PA | 594 | Ripalpha-RA | 1..594 | 610..17 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 1259 | CG18145-RA | 231..828 | 614..17 | 2975 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10199832..10200237 | 17..422 | 2030 | 100 | Plus |
2L | 23513712 | 2L | 10200416..10200542 | 488..614 | 620 | 99.2 | Plus |
2L | 23513712 | 2L | 10200291..10200358 | 422..489 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:05:29 has no hits.
BS11682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:52 Download gff for
BS11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18145-PA | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:37 Download gff for
BS11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..828 | 17..620 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:35 Download gff for
BS11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..828 | 17..620 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:35 Download gff for
BS11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10200416..10200548 | 488..620 | 96 | | Plus |
2L | 10199832..10200236 | 17..421 | 100 | <- | Plus |
2L | 10200291..10200356 | 422..487 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:37 Download gff for
BS11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10199832..10200236 | 17..421 | 100 | <- | Plus |
arm_2L | 10200291..10200356 | 422..487 | 100 | <- | Plus |
arm_2L | 10200416..10200548 | 488..620 | 96 | | Plus |
BS11682.5prime Sequence
624 bp (624 high quality bases) assembled on 2006-06-16
> BS11682.5prime
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCTAGAAGCTTTCTAGACC
BS11682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18145-PA | 594 | Ripalpha-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 1259 | CG18145-RA | 231..828 | 13..610 | 2975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10199832..10200237 | 610..205 | 2030 | 100 | Minus |
2L | 23513712 | 2L | 10200416..10200542 | 139..13 | 620 | 99.2 | Minus |
2L | 23513712 | 2L | 10200291..10200358 | 205..138 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:50:44 has no hits.
BS11682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:52 Download gff for
BS11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18145-PA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:20 Download gff for
BS11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..828 | 7..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:59 Download gff for
BS11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 225..828 | 7..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:59 Download gff for
BS11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10199832..10200236 | 206..610 | 100 | <- | Minus |
2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
2L | 10200416..10200548 | 7..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:20 Download gff for
BS11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10199832..10200236 | 206..610 | 100 | <- | Minus |
arm_2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
arm_2L | 10200416..10200548 | 7..139 | 96 | | Minus |
BS11682.complete Sequence
626 bp assembled on 2006-11-01
GenBank Submission: FJ636929
> BS11682.complete
GAAGTTATCAGTCGACATGAACTCCACTCAAAGCCCGGTTTATCGCACCT
CCGTGGAGCAAAAGCGGCATGCTCAAGAAGTGGCCAAAAGACAGCGGATG
GGCAACCAAATGCCAAGACTTCGCGAAATGCTGCGAGAGAAATACCGCAA
GCGCATCATAGAAACGCGCAATAGATGCACGGATGCCCAACGAGAAATCC
AATTGTCCGAACTCAGGGAAATCCTGCGCCTGGAACTCAGTGAGCTAGAG
AAGGATGTGGAGCTTGAGGAGCTGATTCTGGAGGAGCTACTATCCGATGT
CAACGAGTGGTATGCCCTGGGCGAAAAGAATCTGGAAACGCTATACGCAG
AGCCCGATGAGCAGCAAAAGGAGGTTTTATGCCCAGTTTGTCAGATTAAA
AACCTACGCCATCACAAAGGTGCCTTCATCTGCGAGTGTGGCATCCGCTT
CGAGCACTCTGCGAACATGGAACAGCTGCAGATACTGCTGCAACAACAAA
TCGCCAGCCATGAACTTCAGTGCACTCAGGCCCTGCGATTTTTCATCGAA
CCCGCTTCGGGACAACTATACGACATGTGCGGCAGCTGCGACTACTTCTC
CTCCGTCTAGAAGCTTTCTAGACCAT
BS11682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 594 | CG18145-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-RA | 1259 | CG18145-RA | 231..828 | 13..610 | 2975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10199832..10200237 | 610..205 | 2030 | 100 | Minus |
2L | 23513712 | 2L | 10200416..10200542 | 139..13 | 620 | 99.2 | Minus |
2L | 23513712 | 2L | 10200291..10200358 | 205..138 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:54 has no hits.
BS11682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:59 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:22 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 223..826 | 7..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:15 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 235..828 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:59 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 223..826 | 7..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:19 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ripalpha-RA | 235..828 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:19 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10199832..10200236 | 206..610 | 100 | <- | Minus |
2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
2L | 10200416..10200538 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:15 Download gff for
BS11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10199832..10200236 | 206..610 | 100 | <- | Minus |
arm_2L | 10200291..10200356 | 140..205 | 100 | <- | Minus |
arm_2L | 10200416..10200538 | 17..139 | 100 | | Minus |
BS11682.pep Sequence
Translation from 16 to 609
> BS11682.pep
MNSTQSPVYRTSVEQKRHAQEVAKRQRMGNQMPRLREMLREKYRKRIIET
RNRCTDAQREIQLSELREILRLELSELEKDVELEELILEELLSDVNEWYA
LGEKNLETLYAEPDEQQKEVLCPVCQIKNLRHHKGAFICECGIRFEHSAN
MEQLQILLQQQIASHELQCTQALRFFIEPASGQLYDMCGSCDYFSSV*
BS11682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ripalpha-PA | 197 | CG18145-PA | 1..197 | 1..197 | 1019 | 100 | Plus |