Clone Sequence Records
BS11684.3prime Sequence
576 bp (576 high quality bases) assembled on 2006-06-16
> BS11684.3prime
ATGGTCTAGAAAGCTTTTAATCAGTCTCCTTCTTTATCTGCAGGGGCACT
TGATTCCAGAATTGCTTCAGCTTGGTGATGTTGAGGGAGGAGCAGCTTCG
CTGCACGCGATCCTGCATTTCGATCTCCTTCTGGATGAGATCCTCCATGG
CGGCGTACTTCTCCTCCTCGATCTTCAAATGCGCCAGCATGGCCATGTTC
TCTCTGTATTTGGCCTTCAGCTCCTCCAACCTGGCTGTCTTCTGCTCCTC
CTCTTCGCTGGTATACTGATTCTCGACGAACATGTGCTCCGGATGCAGCA
CATGCGGTGGAACGTGGAACACTTTGCTGTCCAGTTCCCTGAGGGCTTTT
AGGCCCTTGGAGGCGGATGCCTGGAAACGACGCTCAACGGTCTCCTTCTC
GGCTTCCAGCAATTCCGCTGTGGCGGGTGTCTTGATCTTGTCGATGATCT
GACCAATACCCTTCTTAATTATGTCCTGCACAATATGTTCGCGCTCTGCA
GACAACTGTGCCGCTGTGAAATTGAAGAACTTCTGATCGTAGGCTAGGCT
ATTGAAGTCCATGTCGACTGATAACT
BS11684.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18156-PA | 546 | CG18156-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 839 | CG18156-RA | 115..661 | 562..16 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6968509..6968801 | 200..492 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 6968213..6968398 | 16..201 | 930 | 100 | Plus |
3L | 28110227 | 3L | 6968864..6968934 | 492..562 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:39:14 has no hits.
BS11684.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:54 Download gff for
BS11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18156-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:21 Download gff for
BS11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..661 | 16..571 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:50 Download gff for
BS11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..661 | 16..571 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:50 Download gff for
BS11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6968213..6968396 | 16..199 | 100 | <- | Plus |
3L | 6968509..6968801 | 200..492 | 100 | <- | Plus |
3L | 6968865..6968939 | 493..571 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:21 Download gff for
BS11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6961313..6961496 | 16..199 | 100 | <- | Plus |
arm_3L | 6961609..6961901 | 200..492 | 100 | <- | Plus |
arm_3L | 6961965..6962039 | 493..571 | 94 | | Plus |
BS11684.5prime Sequence
576 bp (576 high quality bases) assembled on 2006-06-16
> BS11684.5prime
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATTAAAAGCTTTCTAGACC
BS11684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18156-PA | 546 | CG18156-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 839 | CG18156-RA | 115..661 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6968509..6968801 | 379..87 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 6968213..6968398 | 563..378 | 930 | 100 | Minus |
3L | 28110227 | 3L | 6968864..6968934 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:36 has no hits.
BS11684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:54 Download gff for
BS11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18156-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:04 Download gff for
BS11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..661 | 8..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:55 Download gff for
BS11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 110..661 | 8..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:55 Download gff for
BS11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6968213..6968396 | 380..563 | 100 | <- | Minus |
3L | 6968509..6968801 | 87..379 | 100 | <- | Minus |
3L | 6968865..6968939 | 8..86 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:04 Download gff for
BS11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6961313..6961496 | 380..563 | 100 | <- | Minus |
arm_3L | 6961609..6961901 | 87..379 | 100 | <- | Minus |
arm_3L | 6961965..6962039 | 8..86 | 94 | | Minus |
BS11684.complete Sequence
578 bp assembled on 2006-11-01
GenBank Submission: FJ636930
> BS11684.complete
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATTAAAAGCTTTCTAGACCAT
BS11684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 546 | CG18156-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-RA | 839 | CG18156-RA | 115..661 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6968509..6968801 | 379..87 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 6968213..6968398 | 563..378 | 930 | 100 | Minus |
3L | 28110227 | 3L | 6968864..6968934 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:35 has no hits.
BS11684.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:32 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:09 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 104..655 | 8..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:52 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 115..658 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:32 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 104..655 | 8..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:43 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mis12-RA | 115..658 | 17..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:43 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6968216..6968396 | 380..560 | 100 | <- | Minus |
3L | 6968509..6968801 | 87..379 | 100 | <- | Minus |
3L | 6968865..6968934 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:52 Download gff for
BS11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6961609..6961901 | 87..379 | 100 | <- | Minus |
arm_3L | 6961316..6961496 | 380..560 | 100 | <- | Minus |
arm_3L | 6961965..6962034 | 17..86 | 100 | | Minus |
BS11684.pep Sequence
Translation from 16 to 561
> BS11684.pep
MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE
LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY
TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ
DRVQRSCSSLNITKLKQFWNQVPLQIKKETD*
BS11684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mis12-PA | 181 | CG18156-PA | 1..181 | 1..181 | 915 | 100 | Plus |