Clone BS11684 Report

Search the DGRC for BS11684

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:116
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptMis12-RA
Protein status:BS11684.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11684.3prime Sequence

576 bp (576 high quality bases) assembled on 2006-06-16

> BS11684.3prime
ATGGTCTAGAAAGCTTTTAATCAGTCTCCTTCTTTATCTGCAGGGGCACT
TGATTCCAGAATTGCTTCAGCTTGGTGATGTTGAGGGAGGAGCAGCTTCG
CTGCACGCGATCCTGCATTTCGATCTCCTTCTGGATGAGATCCTCCATGG
CGGCGTACTTCTCCTCCTCGATCTTCAAATGCGCCAGCATGGCCATGTTC
TCTCTGTATTTGGCCTTCAGCTCCTCCAACCTGGCTGTCTTCTGCTCCTC
CTCTTCGCTGGTATACTGATTCTCGACGAACATGTGCTCCGGATGCAGCA
CATGCGGTGGAACGTGGAACACTTTGCTGTCCAGTTCCCTGAGGGCTTTT
AGGCCCTTGGAGGCGGATGCCTGGAAACGACGCTCAACGGTCTCCTTCTC
GGCTTCCAGCAATTCCGCTGTGGCGGGTGTCTTGATCTTGTCGATGATCT
GACCAATACCCTTCTTAATTATGTCCTGCACAATATGTTCGCGCTCTGCA
GACAACTGTGCCGCTGTGAAATTGAAGAACTTCTGATCGTAGGCTAGGCT
ATTGAAGTCCATGTCGACTGATAACT

BS11684.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG18156-PA 546 CG18156-RA 1..546 562..17 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 839 CG18156-RA 115..661 562..16 2735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968509..6968801 200..492 1465 100 Plus
3L 28110227 3L 6968213..6968398 16..201 930 100 Plus
3L 28110227 3L 6968864..6968934 492..562 355 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:39:14 has no hits.

BS11684.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:54 Download gff for BS11684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18156-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:21 Download gff for BS11684.3prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..661 16..571 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:50 Download gff for BS11684.3prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..661 16..571 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:50 Download gff for BS11684.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6968213..6968396 16..199 100 <- Plus
3L 6968509..6968801 200..492 100 <- Plus
3L 6968865..6968939 493..571 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:21 Download gff for BS11684.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961313..6961496 16..199 100 <- Plus
arm_3L 6961609..6961901 200..492 100 <- Plus
arm_3L 6961965..6962039 493..571 94   Plus

BS11684.5prime Sequence

576 bp (576 high quality bases) assembled on 2006-06-16

> BS11684.5prime
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATTAAAAGCTTTCTAGACC

BS11684.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18156-PA 546 CG18156-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 839 CG18156-RA 115..661 17..563 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968509..6968801 379..87 1465 100 Minus
3L 28110227 3L 6968213..6968398 563..378 930 100 Minus
3L 28110227 3L 6968864..6968934 87..17 355 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:36 has no hits.

BS11684.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:54 Download gff for BS11684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18156-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:04 Download gff for BS11684.5prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..661 8..563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:55 Download gff for BS11684.5prime
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 110..661 8..563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:55 Download gff for BS11684.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6968213..6968396 380..563 100 <- Minus
3L 6968509..6968801 87..379 100 <- Minus
3L 6968865..6968939 8..86 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:04 Download gff for BS11684.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961313..6961496 380..563 100 <- Minus
arm_3L 6961609..6961901 87..379 100 <- Minus
arm_3L 6961965..6962039 8..86 94   Minus

BS11684.complete Sequence

578 bp assembled on 2006-11-01

GenBank Submission: FJ636930

> BS11684.complete
GAAGTTATCAGTCGACATGGACTTCAATAGCCTAGCCTACGATCAGAAGT
TCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGCGCGAACATATTGTG
CAGGACATAATTAAGAAGGGTATTGGTCAGATCATCGACAAGATCAAGAC
ACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGAGACCGTTGAGCGTC
GTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCCTCAGGGAACTGGAC
AGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCATCCGGAGCACATGTT
CGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCAGAAGACAGCCAGGT
TGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGGCCATGCTGGCGCAT
TTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAGGATCTCATCCAGAA
GGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTGCTCCTCCCTCAACA
TCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCCTGCAGATAAAGAAG
GAGACTGATTAAAAGCTTTCTAGACCAT

BS11684.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 546 CG18156-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-RA 839 CG18156-RA 115..661 17..563 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6968509..6968801 379..87 1465 100 Minus
3L 28110227 3L 6968213..6968398 563..378 930 100 Minus
3L 28110227 3L 6968864..6968934 87..17 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:14:35 has no hits.

BS11684.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:32 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:09 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 104..655 8..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:52 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 115..658 17..560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:32 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 104..655 8..563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:43 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
Mis12-RA 115..658 17..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:43 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6968216..6968396 380..560 100 <- Minus
3L 6968509..6968801 87..379 100 <- Minus
3L 6968865..6968934 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:52 Download gff for BS11684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6961609..6961901 87..379 100 <- Minus
arm_3L 6961316..6961496 380..560 100 <- Minus
arm_3L 6961965..6962034 17..86 100   Minus

BS11684.pep Sequence

Translation from 16 to 561

> BS11684.pep
MDFNSLAYDQKFFNFTAAQLSAEREHIVQDIIKKGIGQIIDKIKTPATAE
LLEAEKETVERRFQASASKGLKALRELDSKVFHVPPHVLHPEHMFVENQY
TSEEEEQKTARLEELKAKYRENMAMLAHLKIEEEKYAAMEDLIQKEIEMQ
DRVQRSCSSLNITKLKQFWNQVPLQIKKETD*

BS11684.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mis12-PA 181 CG18156-PA 1..181 1..181 915 100 Plus