BS11688.complete Sequence
2261 bp assembled on 2009-12-07
GenBank Submission: KX801999
> BS11688.complete
GAAGTTATCAGTCGACATGTGGCCACCCAGCTCCTGTCTGTGGTTGGCTC
TCGCCCTCCTGGTGGGCGTGGCCCAGGCCCAGAGCGGCAGTCGAGAGCAC
TTCGAGGATGCGGACAAGTCCAGCGAGTATACGGATCAGCAGTTCGATCT
ACGGCACACGATTCCCGGAGAACCGGGCCTAGACTATCCCATTCTAAGTT
CGCCGCCAAGGACCAGCTTTGTGTGCAAGGGAAGACATGAAGGTTATTAC
GCGGATGTAGAAAGTCGCTGCCAGGCCTTCCGCATTTGTGCCCATACCGC
CCGATCACCCCAAGGATTCGGTTTCCTCTGCCCCAACGGAACGCTCTTCA
GCCAGAAGAACTTTGTGTGCGATTGGTACCGCAATGTGAACTGCGATGAT
TCTGAAAAGTATTATGAAATGAACGAGGAGAAAACCGTTGGCAGCACCCA
CGAAATGATGGAGCGAGTGCGTCACATGATGGAATACCCCATGAAAACAA
TTTCAAAGGCCTTGCAACAAACCCAATCCCAGTCACAGAATCCACACCAT
AGTCTTAGCAAGGATCTAAGCGGAGCTAGTGGTGTTTTGAGTCAACCTGC
GGCCATTAAGCTCAATGATCCTGAAACCCAAGTTGTTGGACGCGGAGAAG
ACGTGAAAAGTGAGCCATTGAGTGCAGTACAACTAGGAAGCATTAACCCC
GGGGACAGCGAAGATGAGGGTATTTATGTGAATAGTTTGGGAGAACTTTC
TTCAGATCCAGGCATTCAGTTTGATCACACCAATGCCCATATCGTGGCAG
AATATCCCAGGGAGTACCACTACCAGAAGCAGAAGAACTTTGCCGAGCGT
GTTAACGCGGGCTTGGATATCCTAACTGACTCGGAATCCAACTCCGGTGA
GGCTATGGCACCCGATTACATCAAGCATATAAGAAATACTAAGGACGAGG
CCGTACAACTAGATCTGGTATCGAATATAAACAATCTGCTGGATGAAGTA
TCCACTGATGTGGATCCCTCCATTTCCGGCTATCAATCTATGGCACCGCC
GAAAGTTAAGCAACCTTTCCGATTCCTAAGTCGTGGATTCTCCATGCAGC
GTGAAAACGGAAAGGGTAGCTCATCTTCCGGTTATGGCTACATTAAACCC
AAACAAACGCCCAGCACTGTCAGATTTACGAATTTTAAGAGTGCCCAGTC
GCAGGGTTCCAATCAAGCGCAGCAAAACCAGCGCCAGCAGCAGCAGCAGC
ATCAAGTGGCCAAGCAGCAACATCACTCGGTTAGCAGCAGCTATGTGAAG
CCAGCAGCAGCGCCAGCTATTTCCAGTCTGACTGTACCACAACGACCCCA
ACAAACATCGCAGTCATCTGTGCCGCCAGGAATTGTGATTGCTCGAGCTG
AGGGCCAGCGTATTGCTCCCAACTCCGCCAGCAGCATCATTTCCAGCTTG
GCCACTCAAGCACCAGTGACCAGCAACCAGGGCAACTCCTATGTCTCCCT
CAACGATTTCCTTAACAACAAATTTGGTCAGAGTCCTGCAGCCAGCAGTA
ATGTTCATTCTGCTGCCACTTTGCAGCAGGAACAACAGCCACATTATCAG
CAGCAAGCCACTCTGTCCTTGCAGCAGCAACAGCAACAGCAACGGCAACC
TGTGCTGCAGCAGCAACATCAGCTCGTGCAACAGCAACGCCAGCCTGTGC
AGCAGCAATTGAGCTTTATCTCGCAGCAATACCAGCAGCCGCAGCAGCAG
AGTATCTACCAGCAATATAAACAGCCACAACAGCAACAGCAGCAGCAACA
CTTCCAGCAGCAGCAACAGCGGACGACGATCCACACCAATCAGCAACCCT
ATCTTACGCCCAATATCTTTGTGCCCTACCATCAGCAGCAGCAACAGTTG
CCCCAGTTCCCGCCGTTGGCTCCACCCGTGTCGATATCCACGGGAAATAT
TGCCCAGGGACCGGTGATAGCCGGACGCCATGTGGATCACCTGAATGTGC
AGCTGCCCACGCTGCCCAATGGCTTGATACCTGGCTTGCAGTTGGCACAA
AAGCGCAGCGATGTTTCGTCCAGTCAGCTGCAGCTGACGGATACCAAGGG
CAAGAACAACTTCTCCGGATCGGGCAAAAGTCGGGAACGGGCCTTCTATG
CCGGACGTACTTCATACGATGTTCCCCAGAGCAGCGTTGGTCGACTGCCC
AACGATATCACACAGCAACTGCGACGCCGGTTGCGGCGCTTCTGAAAGCT
TTCTAGACCAT
BS11688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5756-RB | 2229 | CG5756-PB | 1..2229 | 17..2245 | 11130 | 100 | Plus |
| CG5756-RC | 3663 | CG5756-PC | 1..1164 | 17..1180 | 5805 | 99.9 | Plus |
| CG5756-RC | 3663 | CG5756-PC | 2598..3663 | 1180..2245 | 5330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5756-RB | 2666 | CG5756-RB | 247..2477 | 16..2246 | 11140 | 100 | Plus |
| CG5756-RC | 4100 | CG5756-RC | 247..1411 | 16..1180 | 5810 | 99.9 | Plus |
| CG5756-RC | 4100 | CG5756-RC | 2845..3911 | 1180..2246 | 5335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18104001..18104940 | 1180..241 | 4685 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18101250..18102182 | 2246..1314 | 4665 | 100 | Minus |
| 2R | 25286936 | 2R | 18105082..18105310 | 244..16 | 1145 | 100 | Minus |
| 2R | 25286936 | 2R | 18102237..18102373 | 1316..1180 | 685 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6996 | 1621..1896 | 401 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2219..2531 | 1589..1906 | 288 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6924 | 1700..1899 | 268 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2467 | 1701..1896 | 220 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6861 | 1758..1896 | 208 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6853 | 1762..1906 | 169 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2382 | 1743..1847 | 160 | 66.1 | Plus |
BS11688.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:56 Download gff for
BS11688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 245..2472 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:56 Download gff for
BS11688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 248..2475 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:01 Download gff for
BS11688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 245..2472 | 17..2244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:04 Download gff for
BS11688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 248..2475 | 17..2244 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:04 Download gff for
BS11688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18105084..18105309 | 17..242 | 100 | | Minus |
| 2R | 18101252..18102179 | 1317..2244 | 100 | <- | Minus |
| 2R | 18102237..18102372 | 1181..1316 | 100 | <- | Minus |
| 2R | 18104001..18104938 | 243..1180 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:56 Download gff for
BS11688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13989742..13989877 | 1181..1316 | 100 | <- | Minus |
| arm_2R | 13988757..13989684 | 1317..2244 | 100 | <- | Minus |
| arm_2R | 13991506..13992443 | 243..1180 | 99 | <- | Minus |
| arm_2R | 13992589..13992814 | 17..242 | 100 | | Minus |
BS11688.pep Sequence
Translation from 16 to 2244
> BS11688.pep
MWPPSSCLWLALALLVGVAQAQSGSREHFEDADKSSEYTDQQFDLRHTIP
GEPGLDYPILSSPPRTSFVCKGRHEGYYADVESRCQAFRICAHTARSPQG
FGFLCPNGTLFSQKNFVCDWYRNVNCDDSEKYYEMNEEKTVGSTHEMMER
VRHMMEYPMKTISKALQQTQSQSQNPHHSLSKDLSGASGVLSQPAAIKLN
DPETQVVGRGEDVKSEPLSAVQLGSINPGDSEDEGIYVNSLGELSSDPGI
QFDHTNAHIVAEYPREYHYQKQKNFAERVNAGLDILTDSESNSGEAMAPD
YIKHIRNTKDEAVQLDLVSNINNLLDEVSTDVDPSISGYQSMAPPKVKQP
FRFLSRGFSMQRENGKGSSSSGYGYIKPKQTPSTVRFTNFKSAQSQGSNQ
AQQNQRQQQQQHQVAKQQHHSVSSSYVKPAAAPAISSLTVPQRPQQTSQS
SVPPGIVIARAEGQRIAPNSASSIISSLATQAPVTSNQGNSYVSLNDFLN
NKFGQSPAASSNVHSAATLQQEQQPHYQQQATLSLQQQQQQQRQPVLQQQ
HQLVQQQRQPVQQQLSFISQQYQQPQQQSIYQQYKQPQQQQQQQHFQQQQ
QRTTIHTNQQPYLTPNIFVPYHQQQQQLPQFPPLAPPVSISTGNIAQGPV
IAGRHVDHLNVQLPTLPNGLIPGLQLAQKRSDVSSSQLQLTDTKGKNNFS
GSGKSRERAFYAGRTSYDVPQSSVGRLPNDITQQLRRRLRRF*
BS11688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5756-PB | 742 | CG5756-PB | 1..742 | 1..742 | 3861 | 100 | Plus |
| CG5756-PC | 1220 | CG5756-PC | 1..459 | 1..481 | 2064 | 83.8 | Plus |
| CG5756-PC | 1220 | CG5756-PC | 867..1220 | 389..742 | 1805 | 100 | Plus |
| CG32036-PC | 173 | CG32036-PC | 1..142 | 1..138 | 247 | 36.4 | Plus |
| CG14301-PB | 196 | CG14301-PB | 75..168 | 41..136 | 245 | 48.5 | Plus |
| CG13675-PC | 151 | CG13675-PC | 55..137 | 54..138 | 234 | 48.8 | Plus |
