Clone Sequence Records
BS11691.3prime Sequence
858 bp (858 high quality bases) assembled on 2006-06-16
> BS11691.3prime
ATGGTCTAGAAAGCTTCTAATATACGCGATACTTGTAGAAATTGACAAAG
GATATCGTTGCGTTCCAACCAATAATTGTGACGACCAGAAACAGTAGAAA
GATGATGGGCAGGGCGATGAGAATGATGCGGGTGTTTTTCAGATGGGGAA
TGCAATTGTATCCCAGAAATGTGATGTACACATAATAGCCCATGCCCATC
AACCAAAAGGTGTTGCCCAGAAATCGCGAGATGAACCACGTTTGGCTGAT
CAGCCAGTTGTAGAAGAACAGCTGGATGAAGTGCAGCAGCATCAGTGGCG
GAAAGAAGGCATTTAGATGGACATCGAAGGCATAGCCCCACTCGATATCC
GGCTCCAGGCTATTTGTGCGCAGATACCGATTCGTCACCGCCCAGAAGAA
CGAGGCTATTATGATGCCCACGAAAATACAGTCCACGAATACCACATAGA
ATATGAACGAGATGCTCTGCCAGAAAGACAGTCCCAGCACATACGCAAAG
CCCAGGGAGGTGACACATAGGCAGACGACCAGGAGGACCAGAAAGGCCGG
ATCGTCGCGGGCGAACTGTGACTTGGTCTGTTTCCGGTAGTTGAAGTTCC
GGTACACCTTTTGGGGCGCCACAAAGAGGTAGAGCATCTGCCACAGGGCA
AACTCGAAGTCCATTTGATTGAACTTGAGCAGACGTCGCAGGTATTTGTA
GCTCTTGGTGGTCGCCGAGAGGCAGTCCCTCCGGTGGTTGGCGGGTGGCG
GTAATGGCGAATGGAGACGCGAGGCACTCGAGTAGCCGGAAACCACCGAC
GGCGTCGGCGATTGTGTATACTTAACGTGGCTATATTGAGTCATGTCGAC
TGATAACT
BS11691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-PA | 828 | CG9773-RA | 1..828 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-RA | 1021 | CG9773-RA | 96..923 | 844..17 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8675572..8675933 | 153..514 | 1810 | 100 | Plus |
3R | 32079331 | 3R | 8676188..8676518 | 514..844 | 1655 | 100 | Plus |
3R | 32079331 | 3R | 8675381..8675517 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:36:14 has no hits.
BS11691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:55 Download gff for
BS11691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-PA | 1..828 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:24 Download gff for
BS11691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 96..923 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:40 Download gff for
BS11691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 96..923 | 17..844 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:40 Download gff for
BS11691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8675573..8675932 | 154..513 | 100 | <- | Plus |
3R | 8675381..8675517 | 17..153 | 100 | <- | Plus |
3R | 8676188..8676518 | 514..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:24 Download gff for
BS11691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4501103..4501239 | 17..153 | 100 | <- | Plus |
arm_3R | 4501295..4501654 | 154..513 | 100 | <- | Plus |
arm_3R | 4501910..4502240 | 514..844 | 100 | | Plus |
BS11691.5prime Sequence
858 bp (836 high quality bases) assembled on 2006-06-16
> BS11691.5prime
GAAGTTATCAGTCGACATGACTCAATATAGCCACGTTAAGTATACACAAT
CGCCGACGCCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCGTCTCCAT
TCGCCATTACCGCCACCCGCCAACCACCGGAGGGACTGCCTCTCGGCGAC
CACCAAGAGCTACAAATACCTGCGACGTCTGCTCAAGTTCAATCAAATGG
ACTTCGAGTTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGCGCCCCAA
AAGGTGTACCGGAACTTCAACTACCGGAAACAGACCAAGTCACAGTTCGC
CCGCGACGATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTATGTGTCA
CCTCCCTGGGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCAGAGCATC
TCGTTCATATTCTATGTGGTATTCGTGGACTGTATTTTCGTGGGCATCAT
AATAGCCTCGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGCACAAATA
GCCTGGAGCCGGATATCGAGTGGGGCTATGCCTTCGATGTCCATCTAAAT
GCCTTCTTTCCGCCACTGATGCTGCTGCACTTCATCCAGCTGTTCTTCTA
CAACTGGCTGATCAGCCAAACGTGGTTCATCTCGCGATTTCTGGGCAACA
CCTTTTGGTTGATGGGCATGGGCTATTATGTGTACATCACATTTCTGGGA
TACAATTGCATTCCCCATCTGAAAAACACCCGCATCATTCTCATCGCCCT
GCCCATCATCTTTCTACTGTTTCTGGTCGTCACAATTATTGGTTGGAACG
CAACGATATCCTTTGTCAATTTCTACAAGTATCGCGTATATTAGAAACTT
TCTAGACC
BS11691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-PA | 828 | CG9773-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-RA | 1021 | CG9773-RA | 96..923 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8675572..8675933 | 708..347 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 8676188..8676518 | 347..17 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 8675381..8675517 | 844..708 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:36:27 has no hits.
BS11691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:56 Download gff for
BS11691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:25 Download gff for
BS11691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 96..926 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:42 Download gff for
BS11691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 96..926 | 17..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:42 Download gff for
BS11691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8676188..8676518 | 17..347 | 100 | | Minus |
3R | 8675378..8675517 | 708..847 | 99 | <- | Minus |
3R | 8675573..8675932 | 348..707 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:25 Download gff for
BS11691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4501910..4502240 | 17..347 | 100 | | Minus |
arm_3R | 4501100..4501239 | 708..847 | 99 | <- | Minus |
arm_3R | 4501295..4501654 | 348..707 | 100 | <- | Minus |
BS11691.complete Sequence
860 bp assembled on 2006-11-01
GenBank Submission: FJ636931
> BS11691.complete
GAAGTTATCAGTCGACATGACTCAATATAGCCACGTTAAGTATACACAAT
CGCCGACGCCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCGTCTCCAT
TCGCCATTACCGCCACCCGCCAACCACCGGAGGGACTGCCTCTCGGCGAC
CACCAAGAGCTACAAATACCTGCGACGTCTGCTCAAGTTCAATCAAATGG
ACTTCGAGTTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGCGCCCCAA
AAGGTGTACCGGAACTTCAACTACCGGAAACAGACCAAGTCACAGTTCGC
CCGCGACGATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTATGTGTCA
CCTCCCTGGGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCAGAGCATC
TCGTTCATATTCTATGTGGTATTCGTGGACTGTATTTTCGTGGGCATCAT
AATAGCCTCGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGCACAAATA
GCCTGGAGCCGGATATCGAGTGGGGCTATGCCTTCGATGTCCATCTAAAT
GCCTTCTTTCCGCCACTGATGCTGCTGCACTTCATCCAGCTGTTCTTCTA
CAACTGGCTGATCAGCCAAACGTGGTTCATCTCGCGATTTCTGGGCAACA
CCTTTTGGTTGATGGGCATGGGCTATTATGTGTACATCACATTTCTGGGA
TACAATTGCATTCCCCATCTGAAAAACACCCGCATCATTCTCATCGCCCT
GCCCATCATCTTTCTACTGTTTCTGGTCGTCACAATTATTGGTTGGAACG
CAACGATATCCTTTGTCAATTTCTACAAGTATCGCGTATATTAGAAGCTT
TCTAGACCAT
BS11691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-RA | 828 | CG9773-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-RA | 1021 | CG9773-RA | 96..923 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8675572..8675933 | 708..347 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 8676188..8676518 | 347..17 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 8675381..8675517 | 844..708 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:42 has no hits.
BS11691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:09 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:57 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 71..898 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:02 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 96..923 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:09 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 71..898 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:11 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9773-RA | 96..923 | 17..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:11 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8675381..8675517 | 708..844 | 100 | <- | Minus |
3R | 8675573..8675932 | 348..707 | 100 | <- | Minus |
3R | 8676188..8676518 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:02 Download gff for
BS11691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4501103..4501239 | 708..844 | 100 | <- | Minus |
arm_3R | 4501295..4501654 | 348..707 | 100 | <- | Minus |
arm_3R | 4501910..4502240 | 17..347 | 100 | | Minus |
BS11691.pep Sequence
Translation from 16 to 843
> BS11691.pep
MTQYSHVKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYK
YLRRLLKFNQMDFEFALWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPA
FLVLLVVCLCVTSLGFAYVLGLSFWQSISFIFYVVFVDCIFVGIIIASFF
WAVTNRYLRTNSLEPDIEWGYAFDVHLNAFFPPLMLLHFIQLFFYNWLIS
QTWFISRFLGNTFWLMGMGYYVYITFLGYNCIPHLKNTRIILIALPIIFL
LFLVVTIIGWNATISFVNFYKYRVY*
BS11691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9773-PA | 275 | CG9773-PA | 1..275 | 1..275 | 1478 | 100 | Plus |