BS11701.complete Sequence
1571 bp assembled on 2006-11-01
GenBank Submission: FJ636932
> BS11701.complete
GAAGTTATCAGTCGACATGACGGAGCTAAGGGACGAGACACCGCTCTTTC
ACAAGGGCGAGATAGTCCTTTGCTACGAGCCGGATAAATCGAAGGCCCGT
GTTCTTTACACCAGCAAGGTGCTAAACGTCTTTGAGCGCCGGAACGAGCA
TGGCCTGAGGTTCTACGAGTACAAGATTCACTTCCAGGGCTGGCGTCCAT
CCTACGATCGCTGTGTGCGCGCCACCGTTCTATTGAAAGACACCGAGGAG
AATCGCCAGTTGCAAAGGGAGCTGGCCGAAGCTGCCAAGCTGCAAATTCG
TGGTGACTACTCCTACAAGGGCACACCCGATAAGCCATCGGCCAAGAAGA
AACGCGGCGGAAAAGCGGCCCACGTTGAGGAGCCAATAGTGGTTCCAATG
GACACGGGACATCTTGAGGCGGAGCACGAAATGGCGCCCACTCCACGAGC
AGCGGGCAACCGGACGCGGGACAACAGCGGTGGCAAGCGAAAGGAAAAAC
CCCCGTCCGGAGATGGCCGATTAAAGGGAAACCGGGGCAGACAAACAGAG
ACCTTTTATAACAATGCCATAAATGATGTATCGGTCTATAACCATGTGCC
ACAGGAGGATCGCATTATGATGCGAGTCAGCGAGCGATTGCGAGAGCTTA
TAGAGTACGATCGGAATATGATCAAGGTACTAGGCAAACAGCACGCACTG
CCCGCCCGCGTGCCCATCGTGACCATCATGGAAAACTTCGTCAAGCAGCA
GGCCGTGGAGCTAGCCATTAGCATTAAACAGGACAGCTCGAGGGCCAGGA
ACACGCAGAGTCGCAATGCCAGAATGGAGCGGGAATACGATCGCGTTATG
TCCACTGTCTGCATGCTGAAGGAGGTGGTAGACGGATTGCGTATCTACTT
TGAGTTCCACGTGGATGACCACTTGCTGTATACGGAGGAGAAGGAGTATG
TCCACAACTACCTCACAGACGACAACATGCGCAACTGCAGCCTAATATTG
AACAAGTCGTACGAGTATATCAATCCCAGCGGTGACACGGAACTGATCGG
TCTGGACGGCACGCCAGTGGTAGAAGGGTCGGGCGACACCAATGGACAGA
TCGGAGTTATTAATATCGGCGGTCCGGAGTACGAGAAGCAGTTGCAAAAA
TGCCTGCTCTACATTGTTACCGCCAGCGGGAAAAACACTGCGCAGGCCTA
TGAGAGGACTTCCCCATATACGGCTGCCTACAAACTGCCCGTGGAGATGC
GTGGATTTCTGAACGAAACATTCAAGTGGCGGCTTTTGTCAGCGGAATCG
CCGCCAGAAAAGTCCATGGTCTTTGGCGCTCCCCACCTGGTTAGGCTAAT
GATTAAAATGCCCATGTTCTTAAACGCATCGCCGATCAGCAACAAGAAGC
TAGAAGATCTACTTCCCCACCTCGACGCCTTCATCAACTACTTGGAGAAC
CACAGGGAGTGGTTCGACAGGGAAAACTTTGTTAACTCCACTGCCCTGCC
CCAGGAAGATCTGCAGCGGGAGCTGTTGGACTCCCTGGATGGGATTGCTG
CTTAGAAGCTTTCTAGACCAT
BS11701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-3-RA | 1539 | CG8631-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-3-RA | 1970 | CG8631-RA | 112..1650 | 17..1555 | 7695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7124401..7124958 | 855..298 | 2790 | 100 | Minus |
| 3L | 28110227 | 3L | 7123846..7124342 | 1352..856 | 2485 | 100 | Minus |
| 3L | 28110227 | 3L | 7125025..7125205 | 297..117 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 7123533..7123654 | 1555..1434 | 595 | 99.2 | Minus |
| 3L | 28110227 | 3L | 7125319..7125422 | 120..17 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 7123706..7123790 | 1437..1353 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:40:08 has no hits.
BS11701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:35 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 1..1539 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:30 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 98..1646 | 10..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:10 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 112..1650 | 17..1555 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:36 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 98..1646 | 10..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:00 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-3-RA | 112..1650 | 17..1555 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:00 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7125321..7125422 | 17..118 | 100 | | Minus |
| 3L | 7123533..7123650 | 1438..1555 | 100 | <- | Minus |
| 3L | 7123706..7123790 | 1353..1437 | 100 | <- | Minus |
| 3L | 7123846..7124342 | 856..1352 | 100 | <- | Minus |
| 3L | 7124401..7124958 | 298..855 | 100 | <- | Minus |
| 3L | 7125025..7125203 | 119..297 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:10 Download gff for
BS11701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7116633..7116750 | 1438..1555 | 100 | <- | Minus |
| arm_3L | 7116806..7116890 | 1353..1437 | 100 | <- | Minus |
| arm_3L | 7116946..7117442 | 856..1352 | 100 | <- | Minus |
| arm_3L | 7117501..7118058 | 298..855 | 100 | <- | Minus |
| arm_3L | 7118125..7118303 | 119..297 | 100 | <- | Minus |
| arm_3L | 7118421..7118522 | 17..118 | 100 | | Minus |
BS11701.pep Sequence
Translation from 16 to 1554
> BS11701.pep
MTELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFY
EYKIHFQGWRPSYDRCVRATVLLKDTEENRQLQRELAEAAKLQIRGDYSY
KGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPRAAGNRT
RDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRI
MMRVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELA
ISIKQDSSRARNTQSRNARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVD
DHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEYINPSGDTELIGLDGTP
VVEGSGDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKNTAQAYERTSP
YTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSMVFGAPHLVRLMIKMPM
FLNASPISNKKLEDLLPHLDAFINYLENHREWFDRENFVNSTALPQEDLQ
RELLDSLDGIAA*
BS11701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-3-PA | 512 | CG8631-PA | 1..512 | 1..512 | 2679 | 100 | Plus |
