BS11703.complete Sequence
1838 bp assembled on 2009-12-07
GenBank Submission: KX804877
> BS11703.complete
GAAGTTATCAGTCGACATGCTGCCTCGGTTCCGTTCCTTTTACGGCAAAC
TGATCATCTTCATCCTAGTCGCCCTCTGCTTCATCCTCTACAGCAAGGTG
CAGCAGAATGGTTCACCAGAGGAGCCACCTGTAGCGCCACTCGTCCGGGC
GGCCGCTCTGCGAGGTCATGGGCGCGAGCGGTTCGAGGCGTATAGCGACA
GTGAGAACGAGATAGCCCGACCCGCCACCCAGTCGCCGTACGAACAAATA
ATCCAACTGGATCTTCAGAAACAGAAGGTGGGACTCGGCGAACAGGGCGT
GGCAGTGCATCTTTCCGGTGCCGCCAAGGAACGAGGCGATGAGATCTACA
AGAAGATTGCCCTCAACGAGGAGCTAAGCGAGCAGTTGACCTACAACCGG
AGTGTCGGTGACCACCGGAATCCCCTGTGCGCCAAACAGCGCTTTGATTC
CGACTCCCTGCCCACCGCCAGTGTGGTCATCATCTTCTTCAACGAACCCT
ACTCCGTGCTGCTGAGGACCGTGCACAGCACTCTGAGCACCTGCAACGAG
AAGGCCCTGAAGGAGATTATTCTGGTGGATGACGGTAGCGACAACGTGGA
ACTGGGCGCCAAGCTGGACTACTATGTTCGCACGCGGATTCCCTCGGGGA
AGGTCACCATTCTGCGTCTCAAGAACCGATTGGGTTTGATTCGTGCCCGA
TTGGCCGGAGCGCGAATCGCCACGGGGGATGTGCTCATCTTCCTGGATGC
CCATTGCGAGGGTAACATTGGCTGGTGCGAGCCACTCCTGCAGCGCATCA
AGGAGTCGCGGACTAGCGTGCTGGTGCCCATTATCGATGTCATCGATGCC
AACGACTTTCAGTACAGCACAAATGGCTACAAATCCTTCCAGGTCGGCGG
ATTCCAGTGGAATGGCCACTTTGACTGGATCAATCTGCCGGAGCGGGAGA
AGCAGCGCCAGCGACGCGAATGCAAGCAGGAGCGGGAGATCTGTCCAGCA
TACAGTCCCACCATGGCCGGCGGACTGTTTGCCATAGATCGTCGCTACTT
CTGGGAAGTGGGCAGCTACGACGAACAAATGGACGGTTGGGGTGGTGAGA
ACCTGGAGATGTCCTTTCGCATCTGGCAGTGCGGCGGCACCATCGAGACT
ATTCCCTGCTCCCGCGTTGGACACATATTCCGCGACTTCCATCCTTACAA
ATTCCCCAACGATCGCGATACACACGGTATTAATACTGCCCGCATGGCTC
TGGTTTGGATGGATGAGTACATCAACATATTTTTCCTCAACCGGCCGGAC
CTAAAGTTCCACGCGGACATTGGAGATGTCACCCACCGAGTAATGCTGCG
CAAAAAGCTCCGCTGCAAGAGCTTCGAGTGGTACCTCAAGAACATCTATC
CGGAGAAGTTTGTGCCCACGAAGGACGTGCAGGGATGGGGTAAAGTGCAC
GCTGTGAATTCGAACATATGTCTGGACGATTTGCTGCAGAACAACGAAAA
GCCCTATAACGCCGGCTTGTACCCATGCGGCAAGGTGTTGCAGAAGTCGC
AGCTATTCTCCTTCACCAACACAAATGTCCTGCGCAACGAGCTAAGCTGT
GCAACCGTGCAGCACAGCGAGTCCCCACCGTACCGGGTCGTGATGGTGCC
CTGCATGGAGAATGATGAGTTCAACGAGCAGTGGCGATACGAGCACCAGC
ACATCATTCACAGCAACACGGGCATGTGCCTCGATCATCAGGGACTCAAA
AGCCTGGACGACGCCCAGGTGGCGCCTTGCGATCCCCACAGCGAATCCCA
ACGATGGACCATTGAACACTGAAAGCTTTCTAGACCAT
BS11703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T1-RB | 1806 | CG8182-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| GalNAc-T1-RA | 1806 | CG8182-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| GalNAc-T1-RC | 1155 | CG8182-PC | 11..1155 | 678..1822 | 5725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T1-RB | 2677 | CG8182-RB | 291..2098 | 15..1822 | 9040 | 100 | Plus |
| GalNAc-T1-RA | 2697 | CG8182-RA | 311..2118 | 15..1822 | 9040 | 100 | Plus |
| GalNAc-T1-RC | 1789 | CG8182-RC | 66..1210 | 678..1822 | 5725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15512102..15512765 | 15..678 | 3320 | 100 | Plus |
| 2R | 25286936 | 2R | 15514397..15515018 | 1201..1822 | 3110 | 100 | Plus |
| 2R | 25286936 | 2R | 15513745..15514267 | 678..1200 | 2615 | 100 | Plus |
| 2R | 25286936 | 2R | 7059070..7059240 | 1183..1013 | 195 | 74.3 | Minus |
| 2R | 25286936 | 2R | 16681018..16681113 | 1182..1087 | 195 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:12:01 has no hits.
BS11703.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:50 Download gff for
BS11703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RB | 363..2167 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:29 Download gff for
BS11703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RA | 313..2117 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:12 Download gff for
BS11703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RB | 363..2167 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:11 Download gff for
BS11703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RA | 313..2117 | 17..1821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:11 Download gff for
BS11703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15512104..15512765 | 17..678 | 100 | -> | Plus |
| 2R | 15513746..15514267 | 679..1200 | 100 | -> | Plus |
| 2R | 15514397..15515017 | 1201..1821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:29 Download gff for
BS11703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11399609..11400270 | 17..678 | 100 | -> | Plus |
| arm_2R | 11401251..11401772 | 679..1200 | 100 | -> | Plus |
| arm_2R | 11401902..11402522 | 1201..1821 | 100 | | Plus |
BS11703.pep Sequence
Translation from 16 to 1821
> BS11703.pep
MLPRFRSFYGKLIIFILVALCFILYSKVQQNGSPEEPPVAPLVRAAALRG
HGRERFEAYSDSENEIARPATQSPYEQIIQLDLQKQKVGLGEQGVAVHLS
GAAKERGDEIYKKIALNEELSEQLTYNRSVGDHRNPLCAKQRFDSDSLPT
ASVVIIFFNEPYSVLLRTVHSTLSTCNEKALKEIILVDDGSDNVELGAKL
DYYVRTRIPSGKVTILRLKNRLGLIRARLAGARIATGDVLIFLDAHCEGN
IGWCEPLLQRIKESRTSVLVPIIDVIDANDFQYSTNGYKSFQVGGFQWNG
HFDWINLPEREKQRQRRECKQEREICPAYSPTMAGGLFAIDRRYFWEVGS
YDEQMDGWGGENLEMSFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPNDR
DTHGINTARMALVWMDEYINIFFLNRPDLKFHADIGDVTHRVMLRKKLRC
KSFEWYLKNIYPEKFVPTKDVQGWGKVHAVNSNICLDDLLQNNEKPYNAG
LYPCGKVLQKSQLFSFTNTNVLRNELSCATVQHSESPPYRVVMVPCMEND
EFNEQWRYEHQHIIHSNTGMCLDHQGLKSLDDAQVAPCDPHSESQRWTIE
H*
BS11703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T1-PB | 601 | CG8182-PB | 1..601 | 1..601 | 3227 | 100 | Plus |
| GalNAc-T1-PA | 601 | CG8182-PA | 1..601 | 1..601 | 3227 | 100 | Plus |
| GalNAc-T1-PC | 384 | CG8182-PC | 4..384 | 221..601 | 2112 | 100 | Plus |
| pgant5-PA | 630 | CG31651-PA | 122..622 | 83..600 | 947 | 42 | Plus |
| pgant5-PB | 630 | CG31651-PB | 122..622 | 83..600 | 938 | 41.2 | Plus |
