Clone Sequence Records
BS11706.3prime Sequence
495 bp (495 high quality bases) assembled on 2006-06-16
> BS11706.3prime
ATGGTCTAGAAAGCTTTTAGGACCAGAGCTTCAAGTGGGCACGCTTGGCG
TACGACTTCCAGTCGGAGTGGGCGTAGAACTCCTTGAAAATGGGCGTGAC
CAGGGTATCCTCGGGCAGGGTCTTGAAAACGGGCTCACCATACCAGGTGC
CCACCTCCCAGCCGGGCACGTTCTTCATCAGCTCGGCCTCCTCGTCCCGA
TTGCGTCGCAACTGGCGCAGGAATTCGCGATCCCGCTCGGCGACCAAAAT
GGGAAAGATGACATTCTGGGCGGAACGCATCTCGATCTCGTCGCGCTTCA
CCTTCTTGGCGGTCAAGTAGTAGATGCCCAGGCCAACGGCTGTCACAACC
ACATAGGTGCCGATGGTGGTGAAGCCTGTGAAGTAGCTCTTCGGTGGCAC
GCGGGCAAAGGGTATCTTCTTGTAGCCGCCCGGCGGTGGAAGGTCCTGTT
TCGGGGGACAATGAGGCACTGCCGTCGCCATGTCGACTGATAACT
BS11706.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-PA | 465 | CG3446-RA | 1..465 | 481..17 | 2300 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 1265 | CG3446-RC | 120..586 | 482..16 | 2320 | 99.8 | Minus |
CG3446-RB | 713 | CG3446-RB | 120..586 | 482..16 | 2320 | 99.8 | Minus |
CG3446-RA | 957 | CG3446-RA | 120..586 | 482..16 | 2320 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6349695..6350057 | 16..378 | 1815 | 100 | Plus |
X | 23542271 | X | 6350121..6350228 | 375..482 | 525 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:34:52 has no hits.
BS11706.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:59 Download gff for
BS11706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-PA | 1..465 | 17..481 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:45 Download gff for
BS11706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..586 | 16..488 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:54 Download gff for
BS11706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..586 | 16..488 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:54 Download gff for
BS11706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6349695..6350054 | 16..375 | 100 | <- | Plus |
X | 6350122..6350234 | 376..488 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:45 Download gff for
BS11706.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6243728..6244087 | 16..375 | 100 | <- | Plus |
arm_X | 6244155..6244267 | 376..488 | 97 | | Plus |
BS11706.5prime Sequence
495 bp (495 high quality bases) assembled on 2006-06-16
> BS11706.5prime
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCTCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCTAAAAGCTTTCTAGACC
BS11706.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-PA | 465 | CG3446-RA | 1..465 | 17..481 | 2300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 1265 | CG3446-RC | 120..586 | 16..482 | 2320 | 99.8 | Plus |
CG3446-RB | 713 | CG3446-RB | 120..586 | 16..482 | 2320 | 99.8 | Plus |
CG3446-RA | 957 | CG3446-RA | 120..586 | 16..482 | 2320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6349695..6350057 | 482..120 | 1815 | 100 | Minus |
X | 23542271 | X | 6350121..6350228 | 123..16 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:43:52 has no hits.
BS11706.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:00 Download gff for
BS11706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-PA | 1..465 | 17..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:37 Download gff for
BS11706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..586 | 10..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:16 Download gff for
BS11706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 114..586 | 10..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:16 Download gff for
BS11706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6349695..6350054 | 123..482 | 100 | <- | Minus |
X | 6350122..6350234 | 10..122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:37 Download gff for
BS11706.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6243728..6244087 | 123..482 | 100 | <- | Minus |
arm_X | 6244155..6244267 | 10..122 | 97 | | Minus |
BS11706.complete Sequence
497 bp assembled on 2008-08-15
GenBank Submission: FJ636933
> BS11706.complete
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCTCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCTAAAAGCTTTCTAGACCAT
BS11706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 465 | CG3446-PC | 1..465 | 17..481 | 2310 | 99.8 | Plus |
CG3446-RB | 465 | CG3446-PB | 1..465 | 17..481 | 2310 | 99.8 | Plus |
CG3446-RA | 465 | CG3446-PA | 1..465 | 17..481 | 2310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-RC | 1265 | CG3446-RC | 120..586 | 16..482 | 2320 | 99.8 | Plus |
CG3446-RB | 713 | CG3446-RB | 120..586 | 16..482 | 2320 | 99.8 | Plus |
CG3446-RA | 957 | CG3446-RA | 120..586 | 16..482 | 2320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6349695..6350057 | 482..120 | 1815 | 100 | Minus |
X | 23542271 | X | 6350121..6350228 | 123..16 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:14 has no hits.
BS11706.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:02 Download gff for
BS11706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 112..584 | 10..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:24 Download gff for
BS11706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 121..583 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:34 Download gff for
BS11706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 119..581 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:32 Download gff for
BS11706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3446-RA | 121..583 | 17..479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:32 Download gff for
BS11706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6349698..6350054 | 123..479 | 100 | <- | Minus |
X | 6350122..6350227 | 17..122 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:24 Download gff for
BS11706.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6243731..6244087 | 123..479 | 100 | <- | Minus |
arm_X | 6244155..6244260 | 17..122 | 99 | | Minus |
BS11706.pep Sequence
Translation from 16 to 480
> BS11706.pep
MATAVPHCPPKQDLPPPGGYKKIPFARVPPKSYFTGFTTIGTYVVVTAVG
LGIYYLTAKKVKRDEIEMRSAQNVIFPILVAERDREFLRQLRRNRDEEAE
LMKNVPGWEVGTWYGEPVFKTLPEDTLVTPIFKEFYAHSDWKSYAKRAHL
KLWS*
BS11706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3446-PC | 154 | CG3446-PC | 1..154 | 1..154 | 830 | 100 | Plus |
CG3446-PB | 154 | CG3446-PB | 1..154 | 1..154 | 830 | 100 | Plus |
CG3446-PA | 154 | CG3446-PA | 1..154 | 1..154 | 830 | 100 | Plus |