Clone BS11706 Report

Search the DGRC for BS11706

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG3446-RA
Protein status:BS11706.pep: full length peptide match
Sequenced Size:497

Clone Sequence Records

BS11706.3prime Sequence

495 bp (495 high quality bases) assembled on 2006-06-16

> BS11706.3prime
ATGGTCTAGAAAGCTTTTAGGACCAGAGCTTCAAGTGGGCACGCTTGGCG
TACGACTTCCAGTCGGAGTGGGCGTAGAACTCCTTGAAAATGGGCGTGAC
CAGGGTATCCTCGGGCAGGGTCTTGAAAACGGGCTCACCATACCAGGTGC
CCACCTCCCAGCCGGGCACGTTCTTCATCAGCTCGGCCTCCTCGTCCCGA
TTGCGTCGCAACTGGCGCAGGAATTCGCGATCCCGCTCGGCGACCAAAAT
GGGAAAGATGACATTCTGGGCGGAACGCATCTCGATCTCGTCGCGCTTCA
CCTTCTTGGCGGTCAAGTAGTAGATGCCCAGGCCAACGGCTGTCACAACC
ACATAGGTGCCGATGGTGGTGAAGCCTGTGAAGTAGCTCTTCGGTGGCAC
GCGGGCAAAGGGTATCTTCTTGTAGCCGCCCGGCGGTGGAAGGTCCTGTT
TCGGGGGACAATGAGGCACTGCCGTCGCCATGTCGACTGATAACT

BS11706.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-PA 465 CG3446-RA 1..465 481..17 2300 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 1265 CG3446-RC 120..586 482..16 2320 99.8 Minus
CG3446-RB 713 CG3446-RB 120..586 482..16 2320 99.8 Minus
CG3446-RA 957 CG3446-RA 120..586 482..16 2320 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6349695..6350057 16..378 1815 100 Plus
X 23542271 X 6350121..6350228 375..482 525 99.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:34:52 has no hits.

BS11706.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:28:59 Download gff for BS11706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-PA 1..465 17..481 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:45 Download gff for BS11706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..586 16..488 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:54 Download gff for BS11706.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..586 16..488 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:54 Download gff for BS11706.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6349695..6350054 16..375 100 <- Plus
X 6350122..6350234 376..488 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:45 Download gff for BS11706.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6243728..6244087 16..375 100 <- Plus
arm_X 6244155..6244267 376..488 97   Plus

BS11706.5prime Sequence

495 bp (495 high quality bases) assembled on 2006-06-16

> BS11706.5prime
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCTCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCTAAAAGCTTTCTAGACC

BS11706.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-PA 465 CG3446-RA 1..465 17..481 2300 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 1265 CG3446-RC 120..586 16..482 2320 99.8 Plus
CG3446-RB 713 CG3446-RB 120..586 16..482 2320 99.8 Plus
CG3446-RA 957 CG3446-RA 120..586 16..482 2320 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6349695..6350057 482..120 1815 100 Minus
X 23542271 X 6350121..6350228 123..16 525 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 00:43:52 has no hits.

BS11706.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:00 Download gff for BS11706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-PA 1..465 17..481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:44:37 Download gff for BS11706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..586 10..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:16 Download gff for BS11706.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 114..586 10..482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:16 Download gff for BS11706.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6349695..6350054 123..482 100 <- Minus
X 6350122..6350234 10..122 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:44:37 Download gff for BS11706.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6243728..6244087 123..482 100 <- Minus
arm_X 6244155..6244267 10..122 97   Minus

BS11706.complete Sequence

497 bp assembled on 2008-08-15

GenBank Submission: FJ636933

> BS11706.complete
GAAGTTATCAGTCGACATGGCGACGGCAGTGCCTCATTGTCCCCCGAAAC
AGGACCTTCCACCGCCGGGCGGCTACAAGAAGATACCCTTTGCCCGCGTG
CCACCGAAGAGCTACTTCACAGGCTTCACCACCATCGGCACCTATGTGGT
TGTGACAGCCGTTGGCCTGGGCATCTACTACTTGACCGCCAAGAAGGTGA
AGCGCGACGAGATCGAGATGCGTTCCGCCCAGAATGTCATCTTTCCCATT
TTGGTCGCCGAGCGGGATCGCGAATTCCTGCGCCAGTTGCGACGCAATCG
GGACGAGGAGGCCGAGCTGATGAAGAACGTGCCCGGCTGGGAGGTGGGCA
CCTGGTATGGTGAGCCCGTTTTCAAGACCCTGCCCGAGGATACCCTGGTC
ACGCCCATTTTCAAGGAGTTCTACGCCCACTCCGACTGGAAGTCGTACGC
CAAGCGTGCCCACTTGAAGCTCTGGTCCTAAAAGCTTTCTAGACCAT

BS11706.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 465 CG3446-PC 1..465 17..481 2310 99.8 Plus
CG3446-RB 465 CG3446-PB 1..465 17..481 2310 99.8 Plus
CG3446-RA 465 CG3446-PA 1..465 17..481 2310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-RC 1265 CG3446-RC 120..586 16..482 2320 99.8 Plus
CG3446-RB 713 CG3446-RB 120..586 16..482 2320 99.8 Plus
CG3446-RA 957 CG3446-RA 120..586 16..482 2320 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6349695..6350057 482..120 1815 100 Minus
X 23542271 X 6350121..6350228 123..16 525 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:14 has no hits.

BS11706.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:02 Download gff for BS11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 112..584 10..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:24 Download gff for BS11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 121..583 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:34 Download gff for BS11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 119..581 17..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:32 Download gff for BS11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG3446-RA 121..583 17..479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:32 Download gff for BS11706.complete
Subject Subject Range Query Range Percent Splice Strand
X 6349698..6350054 123..479 100 <- Minus
X 6350122..6350227 17..122 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:24 Download gff for BS11706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6243731..6244087 123..479 100 <- Minus
arm_X 6244155..6244260 17..122 99   Minus

BS11706.pep Sequence

Translation from 16 to 480

> BS11706.pep
MATAVPHCPPKQDLPPPGGYKKIPFARVPPKSYFTGFTTIGTYVVVTAVG
LGIYYLTAKKVKRDEIEMRSAQNVIFPILVAERDREFLRQLRRNRDEEAE
LMKNVPGWEVGTWYGEPVFKTLPEDTLVTPIFKEFYAHSDWKSYAKRAHL
KLWS*

BS11706.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3446-PC 154 CG3446-PC 1..154 1..154 830 100 Plus
CG3446-PB 154 CG3446-PB 1..154 1..154 830 100 Plus
CG3446-PA 154 CG3446-PA 1..154 1..154 830 100 Plus