Clone BS11707 Report

Search the DGRC for BS11707

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptRab30-RA
Protein status:BS11707.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11707.3prime Sequence

702 bp (702 high quality bases) assembled on 2006-06-16

> BS11707.3prime
ATGGTCTAGAAAGCTTTCAGCCGCCTTGACTAGAGTTGGAGCCGCCGCTG
GCGAGTCCGCCACAGCAATTGCTCTGCGCTGCCTTGGCACTGAAGCTCCC
CAGTCCGATGGAGCTGCCCTCCGACTGACGCTGGGCGGCTGCCGCTGCGG
CCGAACTACTGCCATCCTTGCTCCTTGCCTGACCAATCAATTCGGCGGCA
ATCTCGTAGAACAGACGCTCTACATTCTCTGCCTCCTTGGCGGATGTCTC
CAAGAAGTACATGTCATGCTGCTTGGCGAACTCTTCGCCAATCTGGGTGG
GTATCTCTCGATCATCCCTGTCCGTCTTGTTACCCACCAGGATTTTGAGT
ACCTTGGAGTTGGCATACTCCTGGATCTCGCGCAGCCAGTCCGGCAGGCA
GTCAAATGTGGGCTGGCAGCTGATGTCGTACACCAGGATCAAGGCGTGAG
CCGATCGATAGTAGCTTTGCGTGATGGATCGGAACCGCTCCTGGCCGGCG
GTGTCCCAGATTTGTAGCTTGATCTTCTCGCCCTCCACCTCCACGGTCTT
AATCATGAAATCCACACCAATGGTGGCACCCTGGCCAGGTGGAAATAGAC
CCTGAGTAAAGCGGCGCACTAGGCATGTTTTTCCAACACCAGCATTGCCC
ACCAGGACGATTTTGAACAGGAACTTGTAGTCCTCCATGTCGACTGATAA
CT

BS11707.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9100-PA 672 Rab30-RA 1..672 688..17 3360 100 Minus
CG9100-PB 672 Rab30-RB 1..672 688..17 3360 100 Minus
CG9100-PC 672 Rab30-RC 1..672 688..17 3360 100 Minus
CG17060-PA 615 Rab10-RA 167..214 528..481 190 95.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 1305 CG9100-RD 435..1106 688..17 3360 100 Minus
Rab30-RC 2055 CG9100-RC 443..1114 688..17 3360 100 Minus
Rab30-RB 1970 CG9100-RB 358..1029 688..17 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7031434..7032105 17..688 3360 100 Plus
X 23542271 X 20252273..20252324 532..481 215 94.2 Minus
Blast to na_te.dros performed on 2015-02-12 07:06:09 has no hits.

BS11707.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:00 Download gff for BS11707.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9100-PC 1..672 17..688 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:13:57 Download gff for BS11707.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1035 12..696 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:45 Download gff for BS11707.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1035 12..696 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:45 Download gff for BS11707.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7031428..7032110 12..694 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:13:57 Download gff for BS11707.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7031428..7032110 12..694 99 <- Plus

BS11707.5prime Sequence

702 bp (702 high quality bases) assembled on 2006-06-16

> BS11707.5prime
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCTGAAAGCTTTCTAGA
CC

BS11707.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9100-PA 672 Rab30-RA 1..672 17..688 3360 100 Plus
CG9100-PB 672 Rab30-RB 1..672 17..688 3360 100 Plus
CG9100-PC 672 Rab30-RC 1..672 17..688 3360 100 Plus
CG17060-PA 615 Rab10-RA 167..214 177..224 190 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 1305 CG9100-RD 435..1106 17..688 3360 100 Plus
Rab30-RC 2055 CG9100-RC 443..1114 17..688 3360 100 Plus
Rab30-RB 1970 CG9100-RB 358..1029 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7031434..7032105 688..17 3360 100 Minus
X 23542271 X 20252273..20252324 173..224 215 94.2 Plus
Blast to na_te.dros performed on 2015-02-11 23:07:42 has no hits.

BS11707.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:01 Download gff for BS11707.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9100-PC 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:29 Download gff for BS11707.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1035 9..693 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:05 Download gff for BS11707.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 350..1035 9..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:05 Download gff for BS11707.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7031428..7032110 11..693 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:29 Download gff for BS11707.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7031428..7032110 11..693 99 <- Minus

BS11707.complete Sequence

704 bp assembled on 2007-10-17

GenBank Submission: FJ636934

> BS11707.complete
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCTGAAAGCTTTCTAGA
CCAT

BS11707.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 672 CG9100-PD 1..672 17..688 3360 100 Plus
Rab30-RC 672 CG9100-PC 1..672 17..688 3360 100 Plus
Rab30-RB 672 CG9100-PB 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-RD 1305 CG9100-RD 435..1106 17..688 3360 100 Plus
Rab30-RC 2055 CG9100-RC 443..1114 17..688 3360 100 Plus
Rab30-RB 1970 CG9100-RB 358..1029 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7031434..7032105 688..17 3360 100 Minus
X 23542271 X 20252273..20252324 173..224 215 94.2 Plus
Blast to na_te.dros performed on 2014-11-27 02:04:32 has no hits.

BS11707.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:11 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RC 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:02 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RC 424..1109 9..693 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:47 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 358..1028 17..687 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:26 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RC 432..1102 17..687 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:58 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
Rab30-RB 358..1028 17..687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:58 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7031435..7032105 17..687 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:47 Download gff for BS11707.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7031435..7032105 17..687 100   Minus

BS11707.pep Sequence

Translation from 16 to 687

> BS11707.pep
MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE
VEGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPD
WLREIQEYANSKVLKILVGNKTDRDDREIPTQIGEEFAKQHDMYFLETSA
KEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFS
AKAAQSNCCGGLASGGSNSSQGG*

BS11707.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rab30-PD 223 CG9100-PD 1..223 1..223 1143 100 Plus
Rab30-PC 223 CG9100-PC 1..223 1..223 1143 100 Plus
Rab30-PB 223 CG9100-PB 1..223 1..223 1143 100 Plus
Rab30-PA 223 CG9100-PA 1..223 1..223 1143 100 Plus
Rab10-PA 204 CG17060-PA 6..203 4..209 449 43.5 Plus