Clone Sequence Records
BS11707.3prime Sequence
702 bp (702 high quality bases) assembled on 2006-06-16
> BS11707.3prime
ATGGTCTAGAAAGCTTTCAGCCGCCTTGACTAGAGTTGGAGCCGCCGCTG
GCGAGTCCGCCACAGCAATTGCTCTGCGCTGCCTTGGCACTGAAGCTCCC
CAGTCCGATGGAGCTGCCCTCCGACTGACGCTGGGCGGCTGCCGCTGCGG
CCGAACTACTGCCATCCTTGCTCCTTGCCTGACCAATCAATTCGGCGGCA
ATCTCGTAGAACAGACGCTCTACATTCTCTGCCTCCTTGGCGGATGTCTC
CAAGAAGTACATGTCATGCTGCTTGGCGAACTCTTCGCCAATCTGGGTGG
GTATCTCTCGATCATCCCTGTCCGTCTTGTTACCCACCAGGATTTTGAGT
ACCTTGGAGTTGGCATACTCCTGGATCTCGCGCAGCCAGTCCGGCAGGCA
GTCAAATGTGGGCTGGCAGCTGATGTCGTACACCAGGATCAAGGCGTGAG
CCGATCGATAGTAGCTTTGCGTGATGGATCGGAACCGCTCCTGGCCGGCG
GTGTCCCAGATTTGTAGCTTGATCTTCTCGCCCTCCACCTCCACGGTCTT
AATCATGAAATCCACACCAATGGTGGCACCCTGGCCAGGTGGAAATAGAC
CCTGAGTAAAGCGGCGCACTAGGCATGTTTTTCCAACACCAGCATTGCCC
ACCAGGACGATTTTGAACAGGAACTTGTAGTCCTCCATGTCGACTGATAA
CT
BS11707.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9100-PA | 672 | Rab30-RA | 1..672 | 688..17 | 3360 | 100 | Minus |
CG9100-PB | 672 | Rab30-RB | 1..672 | 688..17 | 3360 | 100 | Minus |
CG9100-PC | 672 | Rab30-RC | 1..672 | 688..17 | 3360 | 100 | Minus |
CG17060-PA | 615 | Rab10-RA | 167..214 | 528..481 | 190 | 95.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 1305 | CG9100-RD | 435..1106 | 688..17 | 3360 | 100 | Minus |
Rab30-RC | 2055 | CG9100-RC | 443..1114 | 688..17 | 3360 | 100 | Minus |
Rab30-RB | 1970 | CG9100-RB | 358..1029 | 688..17 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7031434..7032105 | 17..688 | 3360 | 100 | Plus |
X | 23542271 | X | 20252273..20252324 | 532..481 | 215 | 94.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:06:09 has no hits.
BS11707.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:00 Download gff for
BS11707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9100-PC | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:13:57 Download gff for
BS11707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1035 | 12..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:45 Download gff for
BS11707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1035 | 12..696 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:15:45 Download gff for
BS11707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7031428..7032110 | 12..694 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:13:57 Download gff for
BS11707.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7031428..7032110 | 12..694 | 99 | <- | Plus |
BS11707.5prime Sequence
702 bp (702 high quality bases) assembled on 2006-06-16
> BS11707.5prime
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCTGAAAGCTTTCTAGA
CC
BS11707.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9100-PA | 672 | Rab30-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG9100-PB | 672 | Rab30-RB | 1..672 | 17..688 | 3360 | 100 | Plus |
CG9100-PC | 672 | Rab30-RC | 1..672 | 17..688 | 3360 | 100 | Plus |
CG17060-PA | 615 | Rab10-RA | 167..214 | 177..224 | 190 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 1305 | CG9100-RD | 435..1106 | 17..688 | 3360 | 100 | Plus |
Rab30-RC | 2055 | CG9100-RC | 443..1114 | 17..688 | 3360 | 100 | Plus |
Rab30-RB | 1970 | CG9100-RB | 358..1029 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7031434..7032105 | 688..17 | 3360 | 100 | Minus |
X | 23542271 | X | 20252273..20252324 | 173..224 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:07:42 has no hits.
BS11707.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:01 Download gff for
BS11707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9100-PC | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:29 Download gff for
BS11707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1035 | 9..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:05 Download gff for
BS11707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 350..1035 | 9..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:05 Download gff for
BS11707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7031428..7032110 | 11..693 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:29 Download gff for
BS11707.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7031428..7032110 | 11..693 | 99 | <- | Minus |
BS11707.complete Sequence
704 bp assembled on 2007-10-17
GenBank Submission: FJ636934
> BS11707.complete
GAAGTTATCAGTCGACATGGAGGACTACAAGTTCCTGTTCAAAATCGTCC
TGGTGGGCAATGCTGGTGTTGGAAAAACATGCCTAGTGCGCCGCTTTACT
CAGGGTCTATTTCCACCTGGCCAGGGTGCCACCATTGGTGTGGATTTCAT
GATTAAGACCGTGGAGGTGGAGGGCGAGAAGATCAAGCTACAAATCTGGG
ACACCGCCGGCCAGGAGCGGTTCCGATCCATCACGCAAAGCTACTATCGA
TCGGCTCACGCCTTGATCCTGGTGTACGACATCAGCTGCCAGCCCACATT
TGACTGCCTGCCGGACTGGCTGCGCGAGATCCAGGAGTATGCCAACTCCA
AGGTACTCAAAATCCTGGTGGGTAACAAGACGGACAGGGATGATCGAGAG
ATACCCACCCAGATTGGCGAAGAGTTCGCCAAGCAGCATGACATGTACTT
CTTGGAGACATCCGCCAAGGAGGCAGAGAATGTAGAGCGTCTGTTCTACG
AGATTGCCGCCGAATTGATTGGTCAGGCAAGGAGCAAGGATGGCAGTAGT
TCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTCGGAGGGCAGCTCCATCGG
ACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGAGCAATTGCTGTGGCGGAC
TCGCCAGCGGCGGCTCCAACTCTAGTCAAGGCGGCTGAAAGCTTTCTAGA
CCAT
BS11707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 672 | CG9100-PD | 1..672 | 17..688 | 3360 | 100 | Plus |
Rab30-RC | 672 | CG9100-PC | 1..672 | 17..688 | 3360 | 100 | Plus |
Rab30-RB | 672 | CG9100-PB | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-RD | 1305 | CG9100-RD | 435..1106 | 17..688 | 3360 | 100 | Plus |
Rab30-RC | 2055 | CG9100-RC | 443..1114 | 17..688 | 3360 | 100 | Plus |
Rab30-RB | 1970 | CG9100-RB | 358..1029 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7031434..7032105 | 688..17 | 3360 | 100 | Minus |
X | 23542271 | X | 20252273..20252324 | 173..224 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:04:32 has no hits.
BS11707.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:11 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RC | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:02 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RC | 424..1109 | 9..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:47 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 358..1028 | 17..687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:26 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RC | 432..1102 | 17..687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:58 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab30-RB | 358..1028 | 17..687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:58 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7031435..7032105 | 17..687 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:47 Download gff for
BS11707.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7031435..7032105 | 17..687 | 100 | | Minus |
BS11707.pep Sequence
Translation from 16 to 687
> BS11707.pep
MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE
VEGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPD
WLREIQEYANSKVLKILVGNKTDRDDREIPTQIGEEFAKQHDMYFLETSA
KEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFS
AKAAQSNCCGGLASGGSNSSQGG*
BS11707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab30-PD | 223 | CG9100-PD | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab30-PC | 223 | CG9100-PC | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab30-PB | 223 | CG9100-PB | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab30-PA | 223 | CG9100-PA | 1..223 | 1..223 | 1143 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 6..203 | 4..209 | 449 | 43.5 | Plus |