BS11708.complete Sequence
1262 bp assembled on 2006-11-01
GenBank Submission: FJ636935
> BS11708.complete
GAAGTTATCAGTCGACATGTTGGTCGTCCTGCTCGCATTATTTTGTGCAG
TCCAGGGCCAGGCATTGGTCCTCAAGGAGCTGCACACCCTGCATCAGTGG
ACGAACCTCAGTTTGGGCGACGATCTGTCCAAGGGCAATCGCTTTCTGCC
GGTGGATGTGGACATTGAGTACGGCGATGAGGGCAGGCATCGCACCTTTC
TCACGATTCCGCGACTGGGGATGGCCACACCCTTCACACTGGCCACCGTC
ATTGCGGAGCACAATGAGCTGGTGGAGAATCCCAGACTGGAACCGTATCC
CAACGAGGAGTGGCACGTGCCACCCAACAATTGCTCCGGCATCACCTCAG
CCATTAGGACTTATATCGACGAGTGCTGGCGACTCTGGGTGGTGGATTCA
GGGCAGGTAAACTCCCTGCAGTTGTGCCCGCCACAAATTCTCACATTTGA
TTTGGTGAAGGACGAACTAGTCCAACGACACGCACTTCCGCCCGATTCCT
ACATTCCCAGCGTATCCATCTTCACGGCTTTGGTGGTGGATCTGGCCGAG
AGGGGCACACCCAACCGATGTGTTGGCGGCAGAGCGTATATAGCCGATGC
CTGGGGTTATGGTCTAATCGTGTTTGACTCCCTGACGGGACGATCCTGGC
GCATAGAGCATGAGTCCATGAAGCCGTCGCCCTTGCTGAGATTAGGACGC
TCCAGCAACTCGCAGGCGGGAATATTTACAGTGAGCCTCAGTCCCAGCGA
AGTGGAAGACCGCTTTCTGTACTTTCACACGCTGAACTCCTTTAATGAGA
TGAGGGTTCCGCTCTCCCTGATCAACAACGAGACCTTCTGGAAGTCTGCG
AATGCCAGCAGGGATAGCTTCCACAGCCTGGGCACCCGAGGAATCCAGTG
CGAATCGGAGGTGATGGATCAGTCGGGGAATCTCTACTGCAGCCTCATCA
GTTTAGGGGCGCTGGTGAAATGGGAGGAGTCCGTGTCCAACTACACGGCG
GATGACCTGCGTGTGGTGGCCTACAATCCGCACAAGATCAAGTTCGTCAC
GGGCCTCAAGATCAACAGGAATTCCAAGGGAGAGGAGGAGCTGTGGGCCT
TGAGCAGCCAGCCGAAACTCTTTGTTGGCGGCGACTTGCCCGCGAACGAG
GTCAAGTTCCAAATAATTGGCTGCCGAACCGCTGACCTGCTTGCCAACAC
GCCGTGTACAGTGGGCGCCGCAGAAACCACGCCCACCAACGTTTAAAAGC
TTTCTAGACCAT
BS11708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e3-RA | 1230 | CG17045-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e3-RA | 1319 | CG17045-RA | 64..1294 | 16..1246 | 6155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13403448..13403937 | 1246..757 | 2450 | 100 | Minus |
| 3R | 32079331 | 3R | 13404001..13404394 | 758..365 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 13404459..13404807 | 364..16 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:59 has no hits.
BS11708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:37 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:32 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 57..1294 | 7..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:09 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 70..1292 | 22..1244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:37 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 57..1294 | 7..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:08 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 70..1292 | 22..1244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:08 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13404459..13404801 | 22..364 | 100 | | Minus |
| 3R | 13403450..13403935 | 759..1244 | 100 | <- | Minus |
| 3R | 13404001..13404394 | 365..758 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:09 Download gff for
BS11708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9229172..9229657 | 759..1244 | 100 | <- | Minus |
| arm_3R | 9229723..9230116 | 365..758 | 100 | <- | Minus |
| arm_3R | 9230181..9230523 | 22..364 | 100 | | Minus |
BS11708.pep Sequence
Translation from 16 to 1245
> BS11708.pep
MLVVLLALFCAVQGQALVLKELHTLHQWTNLSLGDDLSKGNRFLPVDVDI
EYGDEGRHRTFLTIPRLGMATPFTLATVIAEHNELVENPRLEPYPNEEWH
VPPNNCSGITSAIRTYIDECWRLWVVDSGQVNSLQLCPPQILTFDLVKDE
LVQRHALPPDSYIPSVSIFTALVVDLAERGTPNRCVGGRAYIADAWGYGL
IVFDSLTGRSWRIEHESMKPSPLLRLGRSSNSQAGIFTVSLSPSEVEDRF
LYFHTLNSFNEMRVPLSLINNETFWKSANASRDSFHSLGTRGIQCESEVM
DQSGNLYCSLISLGALVKWEESVSNYTADDLRVVAYNPHKIKFVTGLKIN
RNSKGEEELWALSSQPKLFVGGDLPANEVKFQIIGCRTADLLANTPCTVG
AAETTPTNV*
BS11708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e3-PA | 409 | CG17045-PA | 1..409 | 1..409 | 2156 | 100 | Plus |
| yellow-d2-PA | 412 | CG9891-PA | 44..411 | 32..397 | 581 | 35.1 | Plus |
| yellow-d-PA | 432 | CG9889-PA | 31..413 | 19..391 | 555 | 35.8 | Plus |
| yellow-e2-PB | 435 | CG17044-PB | 46..434 | 27..397 | 552 | 32.1 | Plus |
| yellow-h-PA | 463 | CG1629-PA | 79..440 | 34..397 | 430 | 30 | Plus |
