BS11714.complete Sequence
1340 bp assembled on 2006-11-01
GenBank Submission: FJ636936
> BS11714.complete
GAAGTTATCAGTCGACATGGACAACTATACGGACGTACTGTACCAGTACC
GCTTGGCACCGTCCGCCAGCCCGGAAATGGAAATGGAACTGGCCGATCCG
CGTCAGATGGTCCGCGGATTTCATCTGCCAACCAACGAGTCGCAGTTGGA
GATTCCCGACTATGGCAACGAGAGCCTGGACTATCCCAACTACCAGCAGA
TGGTCGGCGGACCGTGTCGCATGGAGGACAACAATATCAGCTATTGGAAT
CTCACCTGCGATTCGCCACTGGAGTACGCTATGCCGCTCTATGGCTACTG
TATGCCCTTCCTGCTGATCATCACCATTATCTCGAACTCCCTGATTGTGC
TCGTTTTGAGCAAGAAGAGCATGGCCACGCCCACCAATTTTGTGCTAATG
GGAATGGCTATATGCGATATGCTGACGGTTATATTTCCGGCACCCGGTCT
CTGGTATATGTACACATTCGGCAATCATTATAAGCCCCTGCATCCGGTCT
CCATGTGTCTGGCCTACAGCATTTTCAATGAGATAATGCCAGCCATGTGC
CACACCATCTCCGTTTGGCTAACTCTGGCCCTCGCCGTTCAAAGATACAT
CTACGTTTGCCACGCCCCCATGGCCCGAACGTGGTGCACGATGCCGCGTG
TGAGGCGGTGCACGGCGTATATTGCATTGCTGGCGTTTCTGCACCAACTG
CCCAGATTCTTCGACAGGACGTACATGCCGCTGGTGATCGAGTGGAACGG
CAGCCCAACGGAGGTGTGCCACTTGGAGACGTCGATGTGGGTGCACGATT
ACATTGGAGTGGACCTATACTACACAAGCTACTATCTGTTCCGGGTGCTG
TTCGTCCACCTGCTGCCCTGCATTATCCTGGTTACCCTGAACATTCTGCT
GTTCGCGGCGATGCGGCAGGCACAGGAGCGCCGAAAGCTCCTCTTCCGGG
AGAACCGGAAGAAGGAGTGCAAGAAACTGAGGGAGACCAATTGCACCACG
CTGATGCTAATTGTGGTCGTGTCGGTGTTCCTTCTAGCCGAGATACCCAT
TGCTGTGGTCACTGCGATGCACATCGTCAGTAGCCTGATTATCGAGTTCC
TGGACTATGGACTGGCCAACATTTGCATCATGCTGACGAACTTCTTCCTG
GTATTCAGCTATCCGATCAACTTCGGCATTTACTGCGGCATGTCGCGCCA
GTTTCGGGAGACTTTCAAGGAGATATTCCTCGGTCGGCTGATGGCCAAAA
AGGATAGCTCCACAAAATACTCGATCGTTAATGGCGCCCGCACCTGCACC
AACACCAACGAGACGGTCCTCTAGAAGCTTTCTAGACCAT
BS11714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPR-RB | 1308 | CG16752-PB | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| SPR-RC | 1308 | CG16752-PC | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| SPR-RA | 1308 | CG16752-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPR-RB | 3357 | CG16752-RB | 295..1606 | 13..1324 | 6545 | 99.9 | Plus |
| SPR-RC | 2804 | CG16752-RC | 214..1525 | 13..1324 | 6545 | 99.9 | Plus |
| SPR-RA | 3093 | CG16752-RA | 503..1814 | 13..1324 | 6545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5491530..5492261 | 593..1324 | 3660 | 100 | Plus |
| X | 23542271 | X | 5478767..5479156 | 13..402 | 1935 | 99.7 | Plus |
| X | 23542271 | X | 5480832..5480967 | 401..536 | 665 | 99.3 | Plus |
| X | 23542271 | X | 5487372..5487435 | 531..594 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:04:28 has no hits.
BS11714.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:26 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 1..1308 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:49 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 502..1809 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:08 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 507..1814 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:26 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 496..1814 | 9..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:37 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPR-RA | 507..1814 | 17..1324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:37 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5478771..5479155 | 17..401 | 100 | -> | Plus |
| X | 5480833..5480963 | 402..532 | 100 | -> | Plus |
| X | 5487374..5487435 | 533..594 | 100 | -> | Plus |
| X | 5491532..5492261 | 595..1324 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:08 Download gff for
BS11714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5372804..5373188 | 17..401 | 100 | -> | Plus |
| arm_X | 5374866..5374996 | 402..532 | 100 | -> | Plus |
| arm_X | 5381407..5381468 | 533..594 | 100 | -> | Plus |
| arm_X | 5385565..5386294 | 595..1324 | 100 | | Plus |
BS11714.pep Sequence
Translation from 16 to 1323
> BS11714.pep
MDNYTDVLYQYRLAPSASPEMEMELADPRQMVRGFHLPTNESQLEIPDYG
NESLDYPNYQQMVGGPCRMEDNNISYWNLTCDSPLEYAMPLYGYCMPFLL
IITIISNSLIVLVLSKKSMATPTNFVLMGMAICDMLTVIFPAPGLWYMYT
FGNHYKPLHPVSMCLAYSIFNEIMPAMCHTISVWLTLALAVQRYIYVCHA
PMARTWCTMPRVRRCTAYIALLAFLHQLPRFFDRTYMPLVIEWNGSPTEV
CHLETSMWVHDYIGVDLYYTSYYLFRVLFVHLLPCIILVTLNILLFAAMR
QAQERRKLLFRENRKKECKKLRETNCTTLMLIVVVSVFLLAEIPIAVVTA
MHIVSSLIIEFLDYGLANICIMLTNFFLVFSYPINFGIYCGMSRQFRETF
KEIFLGRLMAKKDSSTKYSIVNGARTCTNTNETVL*
BS11714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPR-PB | 435 | CG16752-PB | 1..435 | 1..435 | 2317 | 100 | Plus |
| SPR-PC | 435 | CG16752-PC | 1..435 | 1..435 | 2317 | 100 | Plus |
| SPR-PA | 435 | CG16752-PA | 1..435 | 1..435 | 2317 | 100 | Plus |
| FMRFaR-PB | 549 | CG2114-PB | 75..415 | 41..411 | 252 | 22.8 | Plus |
| FMRFaR-PC | 549 | CG2114-PC | 75..415 | 41..411 | 252 | 22.8 | Plus |
