Clone Sequence Records
BS11715.3prime Sequence
552 bp (552 high quality bases) assembled on 2006-06-16
> BS11715.3prime
ATGGTCTAGAAAGCTTTTACCAGCCCTTGTTCCAGCCGGCGGACTGAGCG
CCGGAATAGCCACCAGAGTAGCCACCAGACTGAGCGCCGGAGTAACCACC
GGAGTAGCCACCAGACTGAGCGCCGGAGTAACCGCCAGAGTAGCCTTCGT
TAATGACCTTCACGATGACAACCTTCTCAACGGGCCTGGGAGCAGCATAT
CCGCCAGAGTAGCCACCGCCGCCGGAGTATCCACCACCGCCGGAGTATCC
ACCACCGCCGGAGTAGCCGCCACCGTTGGAGTAGCCACCGGAGTAGCCGC
CGCCGCCTCCACCGCCGCCGAGCTTGCCGCCAAGACCACCGCTCAGACCG
CCCAGGCCGCCGCCCAATCCTCCGCCGAGACCGCCCAGCTTGCTCTGCAG
CAGCTGTCCGATGCCGCCAGCGCCTCCGCCAATAGAGCCGCCGCCTCCAC
CGCCGCCGCCAAGAAGACCGCCCAGGGAGGCCTGTCCCACGGACAGGATG
GCGGCAAGGATCACCAGGATGCAGGCAAAGGGTTTCATGTCGACTGATAA
CT
BS11715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-PB | 693 | CG10598-RB | 172..693 | 538..17 | 2610 | 100 | Minus |
CG10598-PA | 522 | CG10598-RA | 1..522 | 538..17 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 1711 | CG10598-RC | 475..1002 | 543..16 | 2625 | 99.8 | Minus |
CG10598-RA | 729 | CG10598-RA | 50..577 | 543..16 | 2625 | 99.8 | Minus |
CG10598-RC | 1711 | CG10598-RC | 873..940 | 109..42 | 265 | 92.6 | Minus |
CG10598-RC | 1711 | CG10598-RC | 909..976 | 145..78 | 265 | 92.6 | Minus |
CG10598-RA | 729 | CG10598-RA | 448..515 | 109..42 | 265 | 92.6 | Minus |
CG10598-RA | 729 | CG10598-RA | 484..551 | 145..78 | 265 | 92.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17225866..17226393 | 16..543 | 2625 | 99.8 | Plus |
X | 23542271 | X | 17225892..17225959 | 78..145 | 265 | 92.6 | Plus |
X | 23542271 | X | 17225928..17225995 | 42..109 | 265 | 92.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:40:20 has no hits.
BS11715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:01 Download gff for
BS11715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-PA | 1..522 | 17..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:26 Download gff for
BS11715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..577 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:56 Download gff for
BS11715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..577 | 16..543 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:56 Download gff for
BS11715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17225866..17226393 | 16..543 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:26 Download gff for
BS11715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17119899..17120426 | 16..543 | 99 | | Plus |
BS11715.5prime Sequence
552 bp (552 high quality bases) assembled on 2006-06-16
> BS11715.5prime
GAAGTTATCAGTCGACATGAAACCCTTTGCCTGCATCCTGGTGATCCTTG
CCGCCATCCTGTCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGC
GGCGGTGGAGGCGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACA
GCTGCTGCAGAGCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCC
TGGGCGGTCTGAGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGC
GGCGGCGGCTACTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGG
TGGTGGATACTCCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTG
GCGGATATGCTGCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTC
ATTAACGAAGGCTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTA
CTCCGGTGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATT
CCGGCGCTCAGTCCGCCGGCTGGAACAAGGGCTGGTAAAAGCTTTCTAGA
CC
BS11715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-PB | 693 | CG10598-RB | 172..693 | 17..538 | 2610 | 100 | Plus |
CG10598-PA | 522 | CG10598-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 1711 | CG10598-RC | 475..1002 | 12..539 | 2625 | 99.8 | Plus |
CG10598-RA | 729 | CG10598-RA | 50..577 | 12..539 | 2625 | 99.8 | Plus |
CG10598-RC | 1711 | CG10598-RC | 873..940 | 446..513 | 265 | 92.6 | Plus |
CG10598-RC | 1711 | CG10598-RC | 909..976 | 410..477 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 484..551 | 410..477 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 448..515 | 446..513 | 265 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17225866..17226393 | 539..12 | 2625 | 99.8 | Minus |
X | 23542271 | X | 17225892..17225959 | 477..410 | 265 | 92.6 | Minus |
X | 23542271 | X | 17225928..17225995 | 513..446 | 265 | 92.6 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:13:47 has no hits.
BS11715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:01 Download gff for
BS11715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-PA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:58 Download gff for
BS11715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..577 | 12..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:34 Download gff for
BS11715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 50..577 | 12..539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:34 Download gff for
BS11715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17225866..17226393 | 12..539 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:58 Download gff for
BS11715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17119899..17120426 | 12..539 | 99 | | Minus |
BS11715.complete Sequence
554 bp assembled on 2006-11-01
GenBank Submission: FJ636937
> BS11715.complete
GAAGTTATCAGTCGACATGAAACCCTTTGCCTGCATCCTGGTGATCCTTG
CCGCCATCCTGTCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGC
GGCGGTGGAGGCGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACA
GCTGCTGCAGAGCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCC
TGGGCGGTCTGAGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGC
GGCGGCGGCTACTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGG
TGGTGGATACTCCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTG
GCGGATATGCTGCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTC
ATTAACGAAGGCTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTA
CTCCGGTGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATT
CCGGCGCTCAGTCCGCCGGCTGGAACAAGGGCTGGTAAAAGCTTTCTAGA
CCAT
BS11715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 522 | CG10598-PC | 1..522 | 17..538 | 2610 | 100 | Plus |
CG10598-RA | 522 | CG10598-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
CG10598-RC | 522 | CG10598-PC | 394..461 | 446..513 | 265 | 92.6 | Plus |
CG10598-RC | 522 | CG10598-PC | 430..497 | 410..477 | 265 | 92.6 | Plus |
CG10598-RA | 522 | CG10598-PA | 394..461 | 446..513 | 265 | 92.6 | Plus |
CG10598-RA | 522 | CG10598-PA | 430..497 | 410..477 | 265 | 92.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-RC | 1711 | CG10598-RC | 475..1002 | 12..539 | 2625 | 99.8 | Plus |
CG10598-RA | 729 | CG10598-RA | 50..577 | 12..539 | 2625 | 99.8 | Plus |
CG10598-RC | 1711 | CG10598-RC | 909..976 | 410..477 | 265 | 92.6 | Plus |
CG10598-RC | 1711 | CG10598-RC | 873..940 | 446..513 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 448..515 | 446..513 | 265 | 92.6 | Plus |
CG10598-RA | 729 | CG10598-RA | 484..551 | 410..477 | 265 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17225866..17226393 | 539..12 | 2625 | 99.8 | Minus |
X | 23542271 | X | 17225892..17225959 | 477..410 | 265 | 92.6 | Minus |
X | 23542271 | X | 17225928..17225995 | 513..446 | 265 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:33 has no hits.
BS11715.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:47 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 1..522 | 17..538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:43 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 49..576 | 12..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:59 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 55..574 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:47 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 49..576 | 12..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:59 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10598-RA | 55..574 | 17..536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:59 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17225869..17226388 | 17..536 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:59 Download gff for
BS11715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17119902..17120421 | 17..536 | 100 | | Minus |
BS11715.pep Sequence
Translation from 16 to 537
> BS11715.pep
MKPFACILVILAAILSVGQASLGGLLGGGGGGGGSIGGGAGGIGQLLQSK
LGGLGGGLGGGLGGLSGGLGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSG
GGGYSGGGGYSGGYAAPRPVEKVVIVKVINEGYSGGYSGAQSGGYSGGYS
GAQSGGYSGGYSGAQSAGWNKGW*
BS11715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10598-PC | 173 | CG10598-PC | 1..173 | 1..173 | 931 | 100 | Plus |
CG10598-PA | 173 | CG10598-PA | 1..173 | 1..173 | 931 | 100 | Plus |
CG14191-PA | 193 | CG14191-PA | 1..188 | 1..169 | 321 | 44.7 | Plus |
CG12523-PB | 250 | CG12523-PB | 3..159 | 7..172 | 286 | 40.1 | Plus |
CG12523-PA | 250 | CG12523-PA | 3..159 | 7..172 | 286 | 40.1 | Plus |
CG12523-PB | 250 | CG12523-PB | 120..242 | 19..169 | 158 | 36.2 | Plus |
CG14191-PA | 193 | CG14191-PA | 82..189 | 14..111 | 152 | 43.2 | Plus |