Clone BS11715 Report

Search the DGRC for BS11715

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG10598-RA
Protein status:BS11715.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11715.3prime Sequence

552 bp (552 high quality bases) assembled on 2006-06-16

> BS11715.3prime
ATGGTCTAGAAAGCTTTTACCAGCCCTTGTTCCAGCCGGCGGACTGAGCG
CCGGAATAGCCACCAGAGTAGCCACCAGACTGAGCGCCGGAGTAACCACC
GGAGTAGCCACCAGACTGAGCGCCGGAGTAACCGCCAGAGTAGCCTTCGT
TAATGACCTTCACGATGACAACCTTCTCAACGGGCCTGGGAGCAGCATAT
CCGCCAGAGTAGCCACCGCCGCCGGAGTATCCACCACCGCCGGAGTATCC
ACCACCGCCGGAGTAGCCGCCACCGTTGGAGTAGCCACCGGAGTAGCCGC
CGCCGCCTCCACCGCCGCCGAGCTTGCCGCCAAGACCACCGCTCAGACCG
CCCAGGCCGCCGCCCAATCCTCCGCCGAGACCGCCCAGCTTGCTCTGCAG
CAGCTGTCCGATGCCGCCAGCGCCTCCGCCAATAGAGCCGCCGCCTCCAC
CGCCGCCGCCAAGAAGACCGCCCAGGGAGGCCTGTCCCACGGACAGGATG
GCGGCAAGGATCACCAGGATGCAGGCAAAGGGTTTCATGTCGACTGATAA
CT

BS11715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-PB 693 CG10598-RB 172..693 538..17 2610 100 Minus
CG10598-PA 522 CG10598-RA 1..522 538..17 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-RC 1711 CG10598-RC 475..1002 543..16 2625 99.8 Minus
CG10598-RA 729 CG10598-RA 50..577 543..16 2625 99.8 Minus
CG10598-RC 1711 CG10598-RC 873..940 109..42 265 92.6 Minus
CG10598-RC 1711 CG10598-RC 909..976 145..78 265 92.6 Minus
CG10598-RA 729 CG10598-RA 448..515 109..42 265 92.6 Minus
CG10598-RA 729 CG10598-RA 484..551 145..78 265 92.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17225866..17226393 16..543 2625 99.8 Plus
X 23542271 X 17225892..17225959 78..145 265 92.6 Plus
X 23542271 X 17225928..17225995 42..109 265 92.6 Plus
Blast to na_te.dros performed on 2015-02-02 18:40:20 has no hits.

BS11715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:01 Download gff for BS11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10598-PA 1..522 17..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:26 Download gff for BS11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 50..577 16..543 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:56 Download gff for BS11715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 50..577 16..543 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:56 Download gff for BS11715.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17225866..17226393 16..543 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:26 Download gff for BS11715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17119899..17120426 16..543 99   Plus

BS11715.5prime Sequence

552 bp (552 high quality bases) assembled on 2006-06-16

> BS11715.5prime
GAAGTTATCAGTCGACATGAAACCCTTTGCCTGCATCCTGGTGATCCTTG
CCGCCATCCTGTCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGC
GGCGGTGGAGGCGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACA
GCTGCTGCAGAGCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCC
TGGGCGGTCTGAGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGC
GGCGGCGGCTACTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGG
TGGTGGATACTCCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTG
GCGGATATGCTGCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTC
ATTAACGAAGGCTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTA
CTCCGGTGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATT
CCGGCGCTCAGTCCGCCGGCTGGAACAAGGGCTGGTAAAAGCTTTCTAGA
CC

BS11715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-PB 693 CG10598-RB 172..693 17..538 2610 100 Plus
CG10598-PA 522 CG10598-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-RC 1711 CG10598-RC 475..1002 12..539 2625 99.8 Plus
CG10598-RA 729 CG10598-RA 50..577 12..539 2625 99.8 Plus
CG10598-RC 1711 CG10598-RC 873..940 446..513 265 92.6 Plus
CG10598-RC 1711 CG10598-RC 909..976 410..477 265 92.6 Plus
CG10598-RA 729 CG10598-RA 484..551 410..477 265 92.6 Plus
CG10598-RA 729 CG10598-RA 448..515 446..513 265 92.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17225866..17226393 539..12 2625 99.8 Minus
X 23542271 X 17225892..17225959 477..410 265 92.6 Minus
X 23542271 X 17225928..17225995 513..446 265 92.6 Minus
Blast to na_te.dros performed on 2015-02-08 12:13:47 has no hits.

BS11715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:01 Download gff for BS11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10598-PA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:58 Download gff for BS11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 50..577 12..539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:34 Download gff for BS11715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 50..577 12..539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:34 Download gff for BS11715.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17225866..17226393 12..539 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:58 Download gff for BS11715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17119899..17120426 12..539 99   Minus

BS11715.complete Sequence

554 bp assembled on 2006-11-01

GenBank Submission: FJ636937

> BS11715.complete
GAAGTTATCAGTCGACATGAAACCCTTTGCCTGCATCCTGGTGATCCTTG
CCGCCATCCTGTCCGTGGGACAGGCCTCCCTGGGCGGTCTTCTTGGCGGC
GGCGGTGGAGGCGGCGGCTCTATTGGCGGAGGCGCTGGCGGCATCGGACA
GCTGCTGCAGAGCAAGCTGGGCGGTCTCGGCGGAGGATTGGGCGGCGGCC
TGGGCGGTCTGAGCGGTGGTCTTGGCGGCAAGCTCGGCGGCGGTGGAGGC
GGCGGCGGCTACTCCGGTGGCTACTCCAACGGTGGCGGCTACTCCGGCGG
TGGTGGATACTCCGGCGGTGGTGGATACTCCGGCGGCGGTGGCTACTCTG
GCGGATATGCTGCTCCCAGGCCCGTTGAGAAGGTTGTCATCGTGAAGGTC
ATTAACGAAGGCTACTCTGGCGGTTACTCCGGCGCTCAGTCTGGTGGCTA
CTCCGGTGGTTACTCCGGCGCTCAGTCTGGTGGCTACTCTGGTGGCTATT
CCGGCGCTCAGTCCGCCGGCTGGAACAAGGGCTGGTAAAAGCTTTCTAGA
CCAT

BS11715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-RC 522 CG10598-PC 1..522 17..538 2610 100 Plus
CG10598-RA 522 CG10598-PA 1..522 17..538 2610 100 Plus
CG10598-RC 522 CG10598-PC 394..461 446..513 265 92.6 Plus
CG10598-RC 522 CG10598-PC 430..497 410..477 265 92.6 Plus
CG10598-RA 522 CG10598-PA 394..461 446..513 265 92.6 Plus
CG10598-RA 522 CG10598-PA 430..497 410..477 265 92.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-RC 1711 CG10598-RC 475..1002 12..539 2625 99.8 Plus
CG10598-RA 729 CG10598-RA 50..577 12..539 2625 99.8 Plus
CG10598-RC 1711 CG10598-RC 909..976 410..477 265 92.6 Plus
CG10598-RC 1711 CG10598-RC 873..940 446..513 265 92.6 Plus
CG10598-RA 729 CG10598-RA 448..515 446..513 265 92.6 Plus
CG10598-RA 729 CG10598-RA 484..551 410..477 265 92.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17225866..17226393 539..12 2625 99.8 Minus
X 23542271 X 17225892..17225959 477..410 265 92.6 Minus
X 23542271 X 17225928..17225995 513..446 265 92.6 Minus
Blast to na_te.dros performed on 2014-11-27 14:02:33 has no hits.

BS11715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:47 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 1..522 17..538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:43 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 49..576 12..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:59 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 55..574 17..536 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:47 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 49..576 12..539 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:59 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
CG10598-RA 55..574 17..536 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:59 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
X 17225869..17226388 17..536 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:59 Download gff for BS11715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17119902..17120421 17..536 100   Minus

BS11715.pep Sequence

Translation from 16 to 537

> BS11715.pep
MKPFACILVILAAILSVGQASLGGLLGGGGGGGGSIGGGAGGIGQLLQSK
LGGLGGGLGGGLGGLSGGLGGKLGGGGGGGGYSGGYSNGGGYSGGGGYSG
GGGYSGGGGYSGGYAAPRPVEKVVIVKVINEGYSGGYSGAQSGGYSGGYS
GAQSGGYSGGYSGAQSAGWNKGW*

BS11715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10598-PC 173 CG10598-PC 1..173 1..173 931 100 Plus
CG10598-PA 173 CG10598-PA 1..173 1..173 931 100 Plus
CG14191-PA 193 CG14191-PA 1..188 1..169 321 44.7 Plus
CG12523-PB 250 CG12523-PB 3..159 7..172 286 40.1 Plus
CG12523-PA 250 CG12523-PA 3..159 7..172 286 40.1 Plus
CG12523-PB 250 CG12523-PB 120..242 19..169 158 36.2 Plus
CG14191-PA 193 CG14191-PA 82..189 14..111 152 43.2 Plus