BS11717.complete Sequence
2180 bp assembled on 2009-12-07
GenBank Submission: KX801153
> BS11717.complete
GAAGTTATCAGTCGACATGCAGTCAACCCAAAGTAAGAGTGATCGATCTT
CGATGCACAGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGTCCTGGTG
ACTTTGCCTGAACAGATAAATGCTCGTATGGCATTTGAAAAGCTAACGGA
CTTTGATTTTCCGGGCAACACGTATTACAGCGTGAAAAACCTTTCACTGT
ATGAGTGTCAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGCGGCGGCC
TTTAGTTTTGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCCACTGTCA
ATTGCAGAACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCGCAAAGAA
GCGCAAACATGTACTACATGATAAAATTGCAGCTGCGCAGCGAGAATGTG
TGCCACCGACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGATCCGCGG
CCTGGACAATGCACTAATATACACCAGTACAAAAGAGGCCTGCTTATCAG
CTTGCCTCAACGAAAGACGATTCGTATGCCGATCTGTGGAGTATGATTAT
AACAACATGAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCTCTGGACA
GTTTGTTCAACTAGTGGATGCTCAGGGTACGGATTACTTTGAGAATTTGT
GTTTAAAGCCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGGCAATTCC
CAAAAAATGGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTGGTCTGCA
CTACTATACTGACAAGGAACTCCAAGTGACCTCAGAATCCGCCTGCCGTT
TGGCATGTGAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCTGTACCTG
GGTCAACCCCAAGGATCCCAGTACAACTGTAGGCTATATCATTTGGATCA
TAAGACCCTGCCCGATGGTCCATCCACCTATTTGAACCATGAGCGCCCAC
TGATCGATCATGGAGAGCCCATTGGTCAGTACTTTGAAAACCAGTGCGAG
AAGGCCGCCGGTTTGGGAGCTGGATCACCACCGGGAACTCTGGATAAAAT
CGATACTCTACCCGTTAGCCTAGACACCATTGAAGATCCCAACCTGACCA
ACTTAACCCGCAATGACGTTAACTGTGACAAGACGGGAACTTGCTATGAT
GTTTCTGTTCACTGCAAGGACACTAGAATTGCCGTACAGGTCCGCACCAA
CAAGCCGTTCAATGGACGCATTTATGCTTTGGGACGCTCTGAGACCTGCA
ACATCGATGTTATTAACTCTGACGCTTTTCGGTTGGATTTGACCATGGCT
GGACAGGATTGTAACACGCAGAGTGTGACCGGTGTCTACTCCAACACAGT
GGTTTTGCAGCATCACAGCGTGGTAATGACCAAGGCCGACAAGATCTATA
AGGTTAAGTGCACTTACGATATGAGCTCAAAGAATATCACCTTCGGTATG
ATGCCGATCCGTGACCCGGAGATGATCCATATAAATTCGTCACCGGAAGC
TCCACCACCAAGGATCCGCATCCTGGACACACGACAGCGTGAGGTGGAGA
CTGTGCGTATTGGAGATCGTCTTAATTTCCGCATCGAGATTCCTGAAGAC
ACTCCCTATGGCATTTTTGCTCGATCTTGTGTGGCAATGGCTAAGGATGC
CCGCACCAGCTTTAAGATCATCGACGATGACGGCTGCCCCACTGATCCCA
CCATCTTCCCCGGCTTCACCGCCGACGGCAATGCTTTGCAATCTACATAC
GAGGCGTTCCGATTCACGGAGAGCTACGGCGTGATCTTCCAATGCAATGT
CAAGTACTGCTTGGGTCCATGTGAGCCGGCTGTGTGCGAATGGAACATGG
ATTCATTCGAATCTTTGGGGAGACGGCGTCGTCGCTCTATCGAGAGCAAC
GATACCAAGAGCGAGGACGATATGAACATCTCGCAGGAGATCCTCGTTTT
AGACTTCGGCGATGAAAAGCGCGAATTTTTTAAGGCAGATCCCAGCACAG
ACTTCGCCAAAGACAAAACTGTTACCATCATTGAGCCATGCCCCACGAAG
ACATCGGTCCTAGCTCTCGCGGTCACCTGCGCGTTGATGATCCTACTCTA
CATTTCAACTTTATTCTGCTACTACATGAAAAAGTGGATGCAGCCCCACA
AGATCGTAGCATAAAAGCTTTCTAGACCAT
BS11717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tyn-RF | 2148 | CG17131-PF | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| tyn-RE | 2148 | CG17131-PE | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| tyn-RD | 2148 | CG17131-PD | 1..2148 | 17..2164 | 10740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tyn-RF | 3612 | CG17131-RF | 765..2912 | 17..2164 | 10740 | 100 | Plus |
| tyn-RE | 3541 | CG17131-RE | 694..2841 | 17..2164 | 10740 | 100 | Plus |
| tyn-RD | 3521 | CG17131-RD | 674..2821 | 17..2164 | 10740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 196281..197415 | 17..1151 | 5675 | 100 | Plus |
| X | 23542271 | X | 198052..198346 | 1602..1896 | 1475 | 100 | Plus |
| X | 23542271 | X | 197714..197988 | 1327..1601 | 1375 | 100 | Plus |
| X | 23542271 | X | 197476..197652 | 1151..1327 | 885 | 100 | Plus |
| X | 23542271 | X | 198608..198761 | 2011..2164 | 770 | 100 | Plus |
| X | 23542271 | X | 198432..198549 | 1895..2012 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:21:11 has no hits.
BS11717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:42 Download gff for
BS11717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP71-RB | 341..2486 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:09 Download gff for
BS11717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tyn-RB | 439..2584 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:47 Download gff for
BS11717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP71-RB | 341..2486 | 17..2162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:36 Download gff for
BS11717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tyn-RD | 674..2819 | 17..2162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:36 Download gff for
BS11717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 197715..197988 | 1328..1601 | 100 | -> | Plus |
| X | 196281..197415 | 17..1151 | 100 | -> | Plus |
| X | 197477..197652 | 1152..1327 | 100 | -> | Plus |
| X | 198052..198346 | 1602..1896 | 100 | -> | Plus |
| X | 198434..198549 | 1897..2012 | 100 | -> | Plus |
| X | 198610..198759 | 2013..2162 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:09 Download gff for
BS11717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 93285..94419 | 17..1151 | 100 | -> | Plus |
| arm_X | 94481..94656 | 1152..1327 | 100 | -> | Plus |
| arm_X | 94719..94992 | 1328..1601 | 100 | -> | Plus |
| arm_X | 95056..95350 | 1602..1896 | 100 | -> | Plus |
| arm_X | 95438..95553 | 1897..2012 | 100 | -> | Plus |
| arm_X | 95614..95763 | 2013..2162 | 100 | | Plus |
BS11717.pep Sequence
Translation from 16 to 2163
> BS11717.pep
MQSTQSKSDRSSMHRGPLLLCAVMVVLVTLPEQINARMAFEKLTDFDFPG
NTYYSVKNLSLYECQGWCREEADCQAAAFSFVVNPLSPSQETHCQLQNDS
SAANPSAAPQRSANMYYMIKLQLRSENVCHRPWSFERVPNKVIRGLDNAL
IYTSTKEACLSACLNERRFVCRSVEYDYNNMKCVLSDSDRRSSGQFVQLV
DAQGTDYFENLCLKPAQACKNNRSFGNSQKMGVSEEKVAQYVGLHYYTDK
ELQVTSESACRLACEIESEFLCRSFLYLGQPQGSQYNCRLYHLDHKTLPD
GPSTYLNHERPLIDHGEPIGQYFENQCEKAAGLGAGSPPGTLDKIDTLPV
SLDTIEDPNLTNLTRNDVNCDKTGTCYDVSVHCKDTRIAVQVRTNKPFNG
RIYALGRSETCNIDVINSDAFRLDLTMAGQDCNTQSVTGVYSNTVVLQHH
SVVMTKADKIYKVKCTYDMSSKNITFGMMPIRDPEMIHINSSPEAPPPRI
RILDTRQREVETVRIGDRLNFRIEIPEDTPYGIFARSCVAMAKDARTSFK
IIDDDGCPTDPTIFPGFTADGNALQSTYEAFRFTESYGVIFQCNVKYCLG
PCEPAVCEWNMDSFESLGRRRRRSIESNDTKSEDDMNISQEILVLDFGDE
KREFFKADPSTDFAKDKTVTIIEPCPTKTSVLALAVTCALMILLYISTLF
CYYMKKWMQPHKIVA*
BS11717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tyn-PF | 715 | CG17131-PF | 1..715 | 1..715 | 3812 | 100 | Plus |
| tyn-PE | 715 | CG17131-PE | 1..715 | 1..715 | 3812 | 100 | Plus |
| tyn-PD | 715 | CG17131-PD | 1..715 | 1..715 | 3812 | 100 | Plus |
| tyn-PC | 715 | CG17131-PC | 1..715 | 1..715 | 3812 | 100 | Plus |
| tyn-PB | 715 | CG17131-PB | 1..715 | 1..715 | 3812 | 100 | Plus |
