BS11718.complete Sequence
1607 bp assembled on 2008-08-14
GenBank Submission: FJ636938
> BS11718.complete
GAAGTTATCAGTCGACATGGGCCAAGTCGAGGCGCGCACTGTGCTGTGGT
ACATGACATTCATCGGTTTCATCGTGAACTACATGATCCGGATCAATCTG
AACATTACCATTGTGGACATGATTGCCGGGAAGGGTGCTATTACCTCAAA
TGAAACCCACGAGAACTCTACGGACTTGGCTGCCCTTGCGGAAATGAATG
AACGATTTTCGCTGGAGCGTTGGTTTTTGGACTGGGCGAATATTCCGTAC
GAAAAGAATGGATTTCACTGGAACGAGAAGCAGCAGGGCGCTCTGTTGGG
ATCATTTTTCTGGGCCCACTGGACACTGCAGATTCCCGGCGGCATCTTGG
CCACCAAATATGGTACTAAACTGGTGTTTGGTTGGTCCAATGGCATCGGT
GTGTTCTGCTGTTTCCTTATACCAATCGTATCGTACTGGAGCTACACGGG
CTTGATTATCCTGCGAGTATTCCAGGGGTGGATAACGGGCTTGGCCTGGC
CATCGATGCACGTGCTCACTGCCAAATGGATTCCGCCCAACGAGCGCAGC
AAGTTTGTCAGTGCTTACTTGGGCAGTTCTGTGGGCGTGGCCCTGTTCTA
TCCGATCTTCGGCTACATCATCGATTGGACACGGTGGGAGTGGGTCTACT
ATATCTGCGGAATCGTGGGCACTCTCTGGTTCATCGCCTGGCAGTTCCTT
GTGTTCGATAGTCCCGCTGAGCATCCCCGCATCGCTGACTCGGAGAGAAA
GTTCATCGAGAAGTCCTTGGGTGCCTCCATTCAGGGCAGCAAGGGACCCA
CACCCTGGAAGGCGATTGCCACCTCTCGTCCCGTTTGGCTGAATGTGGTC
GCCCAATGGGGTGGCATCTGGGGTCTCTTCACTTTGATGACCCATGCGCC
GACTTACTTCAGACTGATTCACCACTGGAACATTCGAGCGACTGGCTTCC
TGTCCGGACTGCCGCATCTTATGAGAATGCTCTTCGCCTACGTCTTCTCC
ATATTCGCCGACTATCTTCTGCGCACGGATAAGATGAGTCGCACAAATGT
CCGCAAGTTGGCCACATTCATTTGCTGTGGCACTAAAGGCTTAATCGTAT
TAGCACTAGCTTACTTTGGCTACAACGCGACGGCTGCCATCGTGTTGGTC
ACAGTGGCCACCATGCTTCACGGCGCCGTGTCCTCGGGTCCCTTGGCCTC
CATGGTCGATCTGTCGCCAAACTATGCGGGCATTGTCCTGGGCGTGAGTG
GAATGATTGGTGGAATGCCGGGCTTCATATCGCCCTTCATCGTGGGCCAA
CTTACTCACAATAATCAAACCATTGATGCCTGGAAGAATGTGTTCCTGCT
CACCTCGTTGATGTTAACAGGCAGTGGCATCTTGTATGTGCTTTTCTCGG
AATCCAAATTGCAGCCATGGAACAGTGGCTGTCACCAGTTGCCTGATTCC
GGGCTAAAGGAACTTCAGAATCTGGGACGCGATCAGGACGATGAGGAGGA
GAAGAAGCCTCTTAAATCTGACCATGATAAGGAAACCCCTATAGTCGCTG
AACAGGAGACCAAAACAAAATCTGATTGCGATGAAAAGTGAAAGCTTTCT
AGACCAT
BS11718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1575 | CG10207-PB | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| NaPi-T-RA | 1575 | CG10207-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-RB | 1918 | CG10207-RB | 103..1678 | 16..1591 | 7880 | 100 | Plus |
| NaPi-T-RA | 2660 | CG10207-RA | 437..2012 | 16..1591 | 7880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14844213..14844670 | 940..483 | 2275 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14843368..14843643 | 1591..1316 | 1380 | 100 | Minus |
| 2R | 25286936 | 2R | 14844719..14844965 | 488..242 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 14843708..14843949 | 1315..1074 | 1210 | 100 | Minus |
| 2R | 25286936 | 2R | 14845082..14845298 | 241..25 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 14844020..14844154 | 1074..940 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:54:52 has no hits.
BS11718.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:25 Download gff for
BS11718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 430..2012 | 9..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:37 Download gff for
BS11718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 438..2011 | 17..1590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:19 Download gff for
BS11718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 438..2011 | 17..1590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:42 Download gff for
BS11718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaPi-T-RA | 438..2011 | 17..1590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:42 Download gff for
BS11718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14843708..14843949 | 1074..1315 | 100 | <- | Minus |
| 2R | 14844021..14844153 | 941..1073 | 100 | <- | Minus |
| 2R | 14843369..14843643 | 1316..1590 | 100 | <- | Minus |
| 2R | 14844213..14844665 | 488..940 | 100 | <- | Minus |
| 2R | 14844720..14844965 | 242..487 | 100 | <- | Minus |
| 2R | 14845082..14845298 | 25..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:37 Download gff for
BS11718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10731213..10731454 | 1074..1315 | 100 | <- | Minus |
| arm_2R | 10731526..10731658 | 941..1073 | 100 | <- | Minus |
| arm_2R | 10732225..10732470 | 242..487 | 100 | <- | Minus |
| arm_2R | 10730874..10731148 | 1316..1590 | 100 | <- | Minus |
| arm_2R | 10731718..10732170 | 488..940 | 100 | <- | Minus |
| arm_2R | 10732587..10732803 | 25..241 | 100 | | Minus |
BS11718.pep Sequence
Translation from 16 to 1590
> BS11718.pep
MGQVEARTVLWYMTFIGFIVNYMIRINLNITIVDMIAGKGAITSNETHEN
STDLAALAEMNERFSLERWFLDWANIPYEKNGFHWNEKQQGALLGSFFWA
HWTLQIPGGILATKYGTKLVFGWSNGIGVFCCFLIPIVSYWSYTGLIILR
VFQGWITGLAWPSMHVLTAKWIPPNERSKFVSAYLGSSVGVALFYPIFGY
IIDWTRWEWVYYICGIVGTLWFIAWQFLVFDSPAEHPRIADSERKFIEKS
LGASIQGSKGPTPWKAIATSRPVWLNVVAQWGGIWGLFTLMTHAPTYFRL
IHHWNIRATGFLSGLPHLMRMLFAYVFSIFADYLLRTDKMSRTNVRKLAT
FICCGTKGLIVLALAYFGYNATAAIVLVTVATMLHGAVSSGPLASMVDLS
PNYAGIVLGVSGMIGGMPGFISPFIVGQLTHNNQTIDAWKNVFLLTSLML
TGSGILYVLFSESKLQPWNSGCHQLPDSGLKELQNLGRDQDDEEEKKPLK
SDHDKETPIVAEQETKTKSDCDEK*
BS11718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaPi-T-PB | 524 | CG10207-PB | 1..524 | 1..524 | 2821 | 100 | Plus |
| NaPi-T-PA | 524 | CG10207-PA | 1..524 | 1..524 | 2821 | 100 | Plus |
| CG3036-PB | 493 | CG3036-PB | 16..471 | 4..470 | 792 | 33.8 | Plus |
| CG3036-PA | 493 | CG3036-PA | 16..471 | 4..470 | 792 | 33.8 | Plus |
| CG9864-PB | 465 | CG9864-PB | 9..449 | 4..469 | 750 | 32.4 | Plus |
