BS11720.complete Sequence
1091 bp assembled on 2006-11-01
GenBank Submission: FJ636939
> BS11720.complete
GAAGTTATCAGTCGACATGAGCGCTACCGCAACTATGTCACAAGAGCAAA
CGCAAGACGTGGATCACCATGCGCTGCTGGTGGCCAAAATAGTTTCCATG
GTGGTGCTCGTGGTGATCACCGTGCTTTGCGGCAGCCTTCCCTACGTCCT
GAACAGGTGCTTCCATTGGACGAAGGCGAGTCCGGAGGAAACCCGCTCGT
CATTGGTGGTGCGGTGCCTACTCTTTTTCGGCGGCGGTGTGCTCATCTGC
ACCACCTTCCTGCACATGCTGCCCGAGGTGATCGAGGTGGTGGAAGCGCT
CCAGGAATGCGGCTCGCTTGTCAAGACGCCCTTCGCTCTGGCGGAGATGC
TGCTGTGCACGGGCTTTTTCCTGATGTACGCGTTGGACGAGCTGATGACC
AGCCTCGTGCGGCACCACCAGGGAAAGCTTAGTCGGAAAGAGTCGGTGGC
CAGTCTGGCTTTCGAAAGAGGACGCAGCATTCGTCACAGTGTTCTCCTCA
ATCCACAGGCGAAGGAAGAAGTGGAAGTTAAGGATACGGAACCGCAGCCA
CACAAGGATCACCACGGCCACTCGCACATGCCCGTGCCAGCGGACGATGG
ATCCTCTGCCAGGGGGCTGGGCATTATCCTCGCCCTTTCGCTCCACGAAC
TGTTCGAGGGCATGGCCATTGGTCTGGAGGGCACTGTGAGCACTGTGTGG
TTCATGTTTGGAGCGGTCTCCGCCCACAAGTTGGTGTTGGCCTTCTGCGT
GGGTATGGAGCTTCTGGTCGCCCGCACACGCAGTTCGCTGGCCATCTTGT
ACCTGGTGACATTCTCCATTGTTACACCCATCGGTATCGGTGTTGGCCTC
GGCATCAGCCAGCAGGTGGCAGCGGGTCAGCCCAGTCTGCCATCCGGAGT
CCTCCAGGGCATCGCCTGTGGAACCTTGCTGTACGTAGTCTTCTTTGAGA
TCCTCATTGAGAGCCATGCCGGATGGAGGGCCCTTGTGGCCGCCGTTGCG
GGATTCGCTCTAATGTTTGGCCTTCAAATTCTTTCTGACGAAGCGGAGGG
TGATGACAGCCTAACCTGTTCCTAGAAGCTTTCTAGACCAT
BS11720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip42C.1-RA | 1059 | CG9428-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
| Zip42C.2-RB | 933 | CG9430-PB | 148..321 | 206..379 | 270 | 77 | Plus |
| Zip42C.2-RB | 933 | CG9430-PB | 490..618 | 632..760 | 255 | 79.8 | Plus |
| Zip89B-RA | 1488 | CG6898-PA | 825..947 | 631..753 | 255 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip42C.1-RA | 1290 | CG9428-RA | 32..1090 | 17..1075 | 5295 | 100 | Plus |
| Zip42C.2-RB | 1278 | CG9430-RB | 148..321 | 206..379 | 270 | 77 | Plus |
| Zip42C.2-RB | 1278 | CG9430-RB | 490..618 | 632..760 | 255 | 79.8 | Plus |
| Zip89B-RA | 2011 | CG6898-RA | 1238..1360 | 631..753 | 255 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6716655..6717676 | 1038..17 | 5095 | 99.9 | Minus |
| 2R | 25286936 | 2R | 6719213..6719386 | 379..206 | 270 | 77 | Minus |
| 2R | 25286936 | 2R | 6718916..6719044 | 760..632 | 255 | 79.8 | Minus |
| 3R | 32079331 | 3R | 16306995..16307117 | 631..753 | 255 | 80.5 | Plus |
| 2R | 25286936 | 2R | 6716542..6716582 | 1075..1035 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:13:43 has no hits.
BS11720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:27 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZIP1-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:21 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZIP1-RA | 126..1190 | 11..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:03 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZIP1-RA | 32..1090 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:27 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZIP1-RA | 126..1190 | 11..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:10 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip42C.1-RA | 32..1090 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:10 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6716542..6716582 | 1035..1075 | 100 | <- | Minus |
| 2R | 6716659..6717676 | 17..1034 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:03 Download gff for
BS11720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2604047..2604087 | 1035..1075 | 100 | <- | Minus |
| arm_2R | 2604164..2605181 | 17..1034 | 100 | | Minus |
BS11720.pep Sequence
Translation from 16 to 1074
> BS11720.pep
MSATATMSQEQTQDVDHHALLVAKIVSMVVLVVITVLCGSLPYVLNRCFH
WTKASPEETRSSLVVRCLLFFGGGVLICTTFLHMLPEVIEVVEALQECGS
LVKTPFALAEMLLCTGFFLMYALDELMTSLVRHHQGKLSRKESVASLAFE
RGRSIRHSVLLNPQAKEEVEVKDTEPQPHKDHHGHSHMPVPADDGSSARG
LGIILALSLHELFEGMAIGLEGTVSTVWFMFGAVSAHKLVLAFCVGMELL
VARTRSSLAILYLVTFSIVTPIGIGVGLGISQQVAAGQPSLPSGVLQGIA
CGTLLYVVFFEILIESHAGWRALVAAVAGFALMFGLQILSDEAEGDDSLT
CS*
BS11720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip42C.1-PA | 352 | CG9428-PA | 1..352 | 1..352 | 1785 | 100 | Plus |
| Zip89B-PA | 495 | CG6898-PA | 42..410 | 10..340 | 901 | 51.3 | Plus |
| Zip42C.2-PB | 310 | CG9430-PB | 2..309 | 15..351 | 853 | 51.9 | Plus |
| Zip88E-PB | 366 | CG4334-PB | 28..365 | 24..342 | 287 | 27.9 | Plus |
