BS11722.complete Sequence
1169 bp assembled on 2006-11-01
GenBank Submission: FJ636940
> BS11722.complete
GAAGTTATCAGTCGACATGGGCTGTGGCTCCTCCATGGATACGCAGACGA
ATCCTGTCGTCACGGAGGTCAGCTCGGAAATGCAACCTCGCCAGAATGGC
GCCTCTGGAAATGTGGTCGAGCAATATGTGCGCCTGGACGAGCAGATCAG
CAAGCTGGAGGGCACATGTCCTGGTCCTCGAATGGCCACCGCCGAGGCCT
GGGTGGAGCACATTCAGAGCAAGCACGAGGCGATGCTGGGACTCGATGGC
ATGGGAGTGTCTCCTTTGCGCGAGAGGGAATGGGAAACCGAGGAGGCCCT
GCCCATTCCAGCTTACACAATGGGGGGGCGGCAGGGCGACCCAATTGTGG
CCAACACGCCCACCAAGGACCTGGCCCAGCTTGCCTACAACCTGGGCGTA
ATTGGCGATGCCCGCAAGGCTTCCATGCACGAGGATTTCTTCGCCAACCT
GAGCGAGTCCGCCATGTATTTGCTTAGCATTCGTTACTACGGCGAGATGT
TGGAACACACTAAGGTGCGTCTAAAGACTCTGGCCGAGAGCTATGCAGAG
CTGAACGAGCTGTACGTAAAGCAAGACGGGATTATAGCGTATATAAGCGG
GGGAACGTACATGACTCGGCTGGAGGAGAGCATTGATGAGCAGCTTGAGA
CGGCAAGAGATACAAGGGATAAGCTGGGCAGCGCACTGGAGCAGTGGCGC
ATCTGTGGATTACTACTTAGAGCAGCCGCGAATTCCTCGACGCAGGCATT
AAAACAATGGCGACAGCTTGGACGGATAATAGATCCCAAGCAAAAGCTTC
AGTGGGCGTTGGACTGTCGAAGTCTGTTACACGCCTCCACGATATCCCTA
GAGGCGGCTCAGCTGGCTCTGCCGCACGTGGAACTCAAGTACATGAGTCA
TCGGCAAGTCCTAGCCGTCAAGCACTGCAACACCTACCTAATCACGGATA
TAGCAAACAAAGCGCGGTACGAGCACACCAGTCGGGTCTTCACCAGTTAC
GAATCAAACATGTCCAAAACCTGCACGTGGCTCTACGAAACCTTTAACAG
CACGCTGCGCCCAGACTACGACAGGGCGGAGGAAACTGTATGCGGGCTGG
CCAAGACGCTCCGGGATCATCGCGAGGAGGTCTTCAACACGGTGCGCAAG
TGAAAGCTTTCTAGACCAT
BS11722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14044-RA | 1137 | CG14044-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14044-RA | 1318 | CG14044-RA | 111..1247 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4943346..4943748 | 378..780 | 2015 | 100 | Plus |
| 2L | 23513712 | 2L | 4943011..4943280 | 110..379 | 1350 | 100 | Plus |
| 2L | 23513712 | 2L | 4943803..4943991 | 781..969 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 4944047..4944234 | 966..1153 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 4942852..4942944 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:13:24 has no hits.
BS11722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:28 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14044-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:23 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14044-RA | 101..1245 | 10..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:51 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14044-RA | 111..1246 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:29 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14044-RA | 101..1245 | 10..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:32 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14044-RA | 111..1246 | 17..1152 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:32 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4942852..4942944 | 17..109 | 100 | -> | Plus |
| 2L | 4943011..4943280 | 110..379 | 100 | -> | Plus |
| 2L | 4943348..4943748 | 380..780 | 100 | -> | Plus |
| 2L | 4943803..4943988 | 781..966 | 100 | -> | Plus |
| 2L | 4944048..4944233 | 967..1152 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:51 Download gff for
BS11722.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4942852..4942944 | 17..109 | 100 | -> | Plus |
| arm_2L | 4943011..4943280 | 110..379 | 100 | -> | Plus |
| arm_2L | 4943348..4943748 | 380..780 | 100 | -> | Plus |
| arm_2L | 4943803..4943988 | 781..966 | 100 | -> | Plus |
| arm_2L | 4944048..4944233 | 967..1152 | 100 | | Plus |
BS11722.pep Sequence
Translation from 16 to 1152
> BS11722.pep
MGCGSSMDTQTNPVVTEVSSEMQPRQNGASGNVVEQYVRLDEQISKLEGT
CPGPRMATAEAWVEHIQSKHEAMLGLDGMGVSPLREREWETEEALPIPAY
TMGGRQGDPIVANTPTKDLAQLAYNLGVIGDARKASMHEDFFANLSESAM
YLLSIRYYGEMLEHTKVRLKTLAESYAELNELYVKQDGIIAYISGGTYMT
RLEESIDEQLETARDTRDKLGSALEQWRICGLLLRAAANSSTQALKQWRQ
LGRIIDPKQKLQWALDCRSLLHASTISLEAAQLALPHVELKYMSHRQVLA
VKHCNTYLITDIANKARYEHTSRVFTSYESNMSKTCTWLYETFNSTLRPD
YDRAEETVCGLAKTLRDHREEVFNTVRK*
BS11722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14044-PA | 378 | CG14044-PA | 1..378 | 1..378 | 1962 | 100 | Plus |
