BS11723.complete Sequence
1025 bp assembled on 2006-11-01
GenBank Submission: FJ636941
> BS11723.complete
GAAGTTATCAGTCGACATGGAGGCAATGACCATGCTGGTGTTGGGCTTCC
AGTTGCTTGCGCTTTTTTCGATCGCCGGCGCGCTGCTTATCTACCTGATT
TGTAAGGTGCGCGAGGATAGCGCATCTGCCAATGCGGATAGTCATCCCAG
TCGGGTGGTCCTGATAACCAGTGCGGATACCGCATTGGGTCTTCAATTGT
GCACCCATTTGGCTAACAAGGGTTATCGGGTTTTTGCTGGAATGAAAGAG
GCCCAAGATTCGCTACCCGCCAAACTTCTTTGCGGTTGGATGAAGATCCG
AGAGTACAGTGAGGAACCCATTGCAGGCACAATTATTCCGATGAGATTGG
ATGTCACCCGAGAGGATGTGCTTCGCGAGGCCACCGTTATTATAGGCGCT
AATCTAAATGCAGATGAGCGCGGTATTGCGGCCGTAATTAACACTAGTGG
CAGTGTTTTCCGAGGCCAGGTTGAATCGCAGAATGTCCAGCAGTGGGAAC
ACATGCTCAGAACCAACATCCTGGGCACCTTACGTGTGGCCAAGGCCTTT
GTGTGTTTTCTCCGTCCGACACGTGGAAGACTCCTTTACTTGGGAGGAGT
AAGTGGAGGTGGAAATGCTCGAAACGAAGGTGATGGACTGGTTGCCTTTA
ACGCCTCACGCGTTGCCGTAGACAAGTGTGCCGAAGAGCTGCGCAAGGAG
CTGCATCCCTATGGCGTCAGTGTGGTCGCTTTGGATACATGCGGCATGAC
GGCGGAGTCATTGTACAAGGCACCAGTGGCACAAACCATGTCCTTGGTCG
TTGGGGCTCCTACGCAGTATACAGCGGACGTGCTCAGTCCGGACGCTCTT
CATGTGATCGAGCGGGCGTTGTGGGACTATGTTCCGCAGCAGCGATATGC
GCTTCTAAGTCATAACAAATACCAATTTGCGTTGCCATGTCGCTCCTCGC
TGCGACTTCAGAGGCCGGTAGCTTCAACAGTCGGCGAGAGCGCCAGTCAG
TCGGTTTAAAAGCTTTCTAGACCAT
BS11723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13377-RB | 993 | CG13377-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
| CG13377-RA | 993 | CG13377-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13377-RB | 1411 | CG13377-RB | 149..1143 | 17..1011 | 4975 | 100 | Plus |
| CG13377-RA | 1601 | CG13377-RA | 339..1333 | 17..1011 | 4975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 258893..259661 | 785..17 | 3845 | 100 | Minus |
| X | 23542271 | X | 258603..258828 | 1011..786 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:06:55 has no hits.
BS11723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:30 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:24 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 334..1336 | 8..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:24 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 339..1329 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:30 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 334..1336 | 8..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:59 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 339..1329 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:59 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 258607..258828 | 786..1007 | 100 | <- | Minus |
| X | 258893..259661 | 17..785 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:24 Download gff for
BS11723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 152640..152861 | 786..1007 | 100 | <- | Minus |
| arm_X | 152926..153694 | 17..785 | 100 | | Minus |
BS11723.pep Sequence
Translation from 16 to 1008
> BS11723.pep
MEAMTMLVLGFQLLALFSIAGALLIYLICKVREDSASANADSHPSRVVLI
TSADTALGLQLCTHLANKGYRVFAGMKEAQDSLPAKLLCGWMKIREYSEE
PIAGTIIPMRLDVTREDVLREATVIIGANLNADERGIAAVINTSGSVFRG
QVESQNVQQWEHMLRTNILGTLRVAKAFVCFLRPTRGRLLYLGGVSGGGN
ARNEGDGLVAFNASRVAVDKCAEELRKELHPYGVSVVALDTCGMTAESLY
KAPVAQTMSLVVGAPTQYTADVLSPDALHVIERALWDYVPQQRYALLSHN
KYQFALPCRSSLRLQRPVASTVGESASQSV*
BS11723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13377-PB | 330 | CG13377-PB | 1..330 | 1..330 | 1668 | 100 | Plus |
| CG13377-PA | 330 | CG13377-PA | 1..330 | 1..330 | 1668 | 100 | Plus |
| CG31549-PB | 257 | CG31549-PB | 3..194 | 42..251 | 161 | 25.2 | Plus |
| CG31549-PA | 257 | CG31549-PA | 3..194 | 42..251 | 161 | 25.2 | Plus |
| CG8888-PA | 388 | CG8888-PA | 69..273 | 11..236 | 155 | 28.4 | Plus |
