Clone BS11725 Report

Search the DGRC for BS11725

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG14147-RA
Protein status:BS11725.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11725.3prime Sequence

492 bp (492 high quality bases) assembled on 2006-06-16

> BS11725.3prime
ATGGTCTAGAAAGCTTTCAATAATGGGTCTCGGTGATCCTGACCTTTCCG
TACTTTCCGTGCAGGGCGTGCTTGGCGAAGGACAGGAGGTTCGAGTGGCT
GTGGACATCGAAGTGGGCCGGGGTACTGTGATGCACCACGGCGGCGTGGG
TGTCATGGTGATGATGGTGCACCACCGGAGCGGAGTGCAGGCGAGCGTAG
TGGTAGTGAAGTGGCTCATGGTGGTACACTGTGGTTGGCAGCGACTCAAC
CAGGTGGTGATCCAAATGATGATCCAAATGATGGTTCAGATGGTGATCAT
CGTGCACCAAAGCGGCACTGTGTCCCAGATGGATGCCATCCGAATGATGG
ATCTCAGCGTCCAGCAGATGAGGCAGTTCCTCATGGTGGTAACCATGATG
GCTATCCACATGGGGCAGAAGACCTGGGGCAGCCTGGGCCACAGCCAGCA
CAGCCAAGATGCACACGAAGAACTTCATGTCGACTGATAACT

BS11725.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-PA 462 CG14147-RA 1..462 478..17 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-RA 761 CG14147-RA 91..552 478..17 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10972810..10973267 474..17 2290 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:22:14 has no hits.

BS11725.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:04 Download gff for BS11725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14147-PA 1..462 17..478 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:05:18 Download gff for BS11725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 81..558 11..488 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:35 Download gff for BS11725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 81..558 11..488 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:35 Download gff for BS11725.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10972806..10973273 11..478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:05:18 Download gff for BS11725.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10965906..10966373 11..478 99   Minus

BS11725.5prime Sequence

492 bp (492 high quality bases) assembled on 2006-06-16

> BS11725.5prime
GAAGTTATCAGTCGACATGAAGTTCTTCGTGTGCATCTTGGCTGTGCTGG
CTGTGGCCCAGGCTGCCCCAGGTCTTCTGCCCCATGTGGATAGCCATCAT
GGTTACCACCATGAGGAACTGCCTCATCTGCTGGACGCTGAGATCCATCA
TTCGGATGGCATCCATCTGGGACACAGTGCCGCTTTGGTGCACGATGATC
ACCATCTGAACCATCATTTGGATCATCATTTGGATCACCACCTGGTTGAG
TCGCTGCCAACCACAGTGTACCACCATGAGCCACTTCACTACCACTACGC
TCGCCTGCACTCCGCTCCGGTGGTGCACCATCATCACCATGACACCCACG
CCGCCGTGGTGCATCACAGTACCCCGGCCCACTTCGATGTCCACAGCCAC
TCGAACCTCCTGTCCTTCGCCAAGCACGCCCTGCACGGAAAGTACGGAAA
GGTCAGGATCACCGAGACCCATTATTGAAAGCTTTCTAGACC

BS11725.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-PA 462 CG14147-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-RA 761 CG14147-RA 91..552 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10972810..10973267 21..478 2290 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:51:26 has no hits.

BS11725.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:04 Download gff for BS11725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14147-PA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:33:32 Download gff for BS11725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 81..558 7..484 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:56 Download gff for BS11725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 81..558 7..484 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:56 Download gff for BS11725.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10972806..10973273 17..484 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:33:32 Download gff for BS11725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10965906..10966373 17..484 99   Plus

BS11725.complete Sequence

494 bp assembled on 2007-10-17

GenBank Submission: FJ636942

> BS11725.complete
GAAGTTATCAGTCGACATGAAGTTCTTCGTGTGCATCTTGGCTGTGCTGG
CTGTGGCCCAGGCTGCCCCAGGTCTTCTGCCCCATGTGGATAGCCATCAT
GGTTACCACCATGAGGAACTGCCTCATCTGCTGGACGCTGAGATCCATCA
TTCGGATGGCATCCATCTGGGACACAGTGCCGCTTTGGTGCACGATGATC
ACCATCTGAACCATCATTTGGATCATCATTTGGATCACCACCTGGTTGAG
TCGCTGCCAACCACAGTGTACCACCATGAGCCACTTCACTACCACTACGC
TCGCCTGCACTCCGCTCCGGTGGTGCACCATCATCACCATGACACCCACG
CCGCCGTGGTGCATCACAGTACCCCGGCCCACTTCGATGTCCACAGCCAC
TCGAACCTCCTGTCCTTCGCCAAGCACGCCCTGCACGGAAAGTACGGAAA
GGTCAGGATCACCGAGACCCATTATTGAAAGCTTTCTAGACCAT

BS11725.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-RA 462 CG14147-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-RA 761 CG14147-RA 91..552 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10972810..10973267 21..478 2290 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:16:49 has no hits.

BS11725.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:15 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 1..462 17..478 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:05 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 75..552 7..484 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:44 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 91..551 17..477 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:01 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 85..545 17..477 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:00 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
CG14147-RA 91..551 17..477 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:00 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10972806..10973266 17..477 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:44 Download gff for BS11725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10965906..10966366 17..477 99   Plus

BS11725.pep Sequence

Translation from 16 to 477

> BS11725.pep
MKFFVCILAVLAVAQAAPGLLPHVDSHHGYHHEELPHLLDAEIHHSDGIH
LGHSAALVHDDHHLNHHLDHHLDHHLVESLPTTVYHHEPLHYHYARLHSA
PVVHHHHHDTHAAVVHHSTPAHFDVHSHSNLLSFAKHALHGKYGKVRITE
THY*

BS11725.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14147-PA 153 CG14147-PA 1..153 1..153 870 100 Plus