BS11726.complete Sequence
1250 bp assembled on 2008-08-14
GenBank Submission: FJ636943
> BS11726.complete
GAAGTTATCAGTCGACATGACTCAGTTTGGTCGCATGTGGTGGGTGCCAC
TGCTGCAGTGGCTTAACATCGGATCAGGATTAGGTGTGGGTGCCTGGAGC
TTTGGACCAGTTCAATCGGATGCCAGCCAGGATACAAATCGAGTGCCGCA
ACCCAGCGATGTGGGCAGCACTGCGAATCACACAATACTCGCCCGGCAGC
TGATTGTGGGCACCCTGCTGCCACCGCAGGTTGCGCCGGGCACCTGGCCA
CCTGTGCCCTCCATCGTGAGTCCCGGAACCAGCTACTGCCAGTGCGTTCC
GCCCGGATCATGCGCCAATCCTCTGCCCACCGCACCCAGCGATGGCAGTG
GCCAGATTGACATCAGGATTGTCAACAATGGAGGATATCCCACTGTTCCA
ACCACATCTTCCACTCTGACATGTAGCTATGGTCTGGTGGCCTGCTGCCA
GGCGGGAAGCTATCAGTGTGGTCGGAGGTTCCCGCCTCCACCGGGATCCA
CCACCGCTGCGCCTGGACAGGCCAGTTTTGGAGCATATCCTTGGCAGGCG
GCACTGCTTACCACCGCGGATGTTTATCTGGGTGGCGGAGCACTGATCAC
CGCACAACATGTTCTGACCGCCGCCCACAAAGTTTACAATCTGGGGCTCA
CTTACTTTAAGGTTCGTCTGGGGGAATGGGATGCTGCCAGTACGAGCGAA
CCGATTCCCGCCCAGGATGTGTACATCTCGAATGTGTACGTCAATCCGTC
CTTCAATCCCAACAATCTGCAGAACGATGTGGCCATCCTGAAGTTGTCCA
CACCCGTTTCGCTGACCAGCAAATCCACTGTGGGCACTGTCTGTCTGCCC
ACCACCAGTTTCGTGGGTCAGAGATGCTGGGTAGCTGGGTGGGGCAAGAA
TGACTTCGGTGCCACCGGAGCGTACCAGGCCATTGAGAGGCAAGTGGATG
TGCCCCTGATTCCCAATGCCAATTGCCAGGCGGCGCTGCAGGCAACCCGA
CTGGGCTCCTCCTTCGTCCTCAGTCCCACCAGCTTCATTTGTGCCGGCGG
AGAAGCTGGCAAGGATGCCTGCACCGGGGATGGGGGATCTCCGCTTGTCT
GCACCAGCAATGGTGTATGGTACGTGGTGGGTTTGGTGGCCTGGGGCATT
GGATGCGCCCAGGCAGGAGTTCCGGGTGTCTATGTCAATGTGGGCACCTA
TCTGCCCTGGATCCAAACAACGCTGACGTTATAGAAGCTTTCTAGACCAT
BS11726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13318-RA | 1218 | CG13318-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13318-RA | 1271 | CG13318-RA | 20..1239 | 17..1236 | 6100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8771278..8771869 | 1236..645 | 2960 | 100 | Minus |
| 3R | 32079331 | 3R | 8771927..8772184 | 646..389 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 8772248..8772450 | 388..186 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 8772504..8772672 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:15 has no hits.
BS11726.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:50 Download gff for
BS11726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 6..1234 | 8..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:34 Download gff for
BS11726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 20..1237 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:36 Download gff for
BS11726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 15..1232 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:39 Download gff for
BS11726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 20..1237 | 17..1234 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:39 Download gff for
BS11726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8771280..8771868 | 646..1234 | 100 | <- | Minus |
| 3R | 8771928..8772184 | 389..645 | 100 | <- | Minus |
| 3R | 8772248..8772450 | 186..388 | 100 | <- | Minus |
| 3R | 8772504..8772672 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:34 Download gff for
BS11726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4597002..4597590 | 646..1234 | 100 | <- | Minus |
| arm_3R | 4597650..4597906 | 389..645 | 100 | <- | Minus |
| arm_3R | 4597970..4598172 | 186..388 | 100 | <- | Minus |
| arm_3R | 4598226..4598394 | 17..185 | 100 | | Minus |
BS11726.pep Sequence
Translation from 16 to 1233
> BS11726.pep
MTQFGRMWWVPLLQWLNIGSGLGVGAWSFGPVQSDASQDTNRVPQPSDVG
STANHTILARQLIVGTLLPPQVAPGTWPPVPSIVSPGTSYCQCVPPGSCA
NPLPTAPSDGSGQIDIRIVNNGGYPTVPTTSSTLTCSYGLVACCQAGSYQ
CGRRFPPPPGSTTAAPGQASFGAYPWQAALLTTADVYLGGGALITAQHVL
TAAHKVYNLGLTYFKVRLGEWDAASTSEPIPAQDVYISNVYVNPSFNPNN
LQNDVAILKLSTPVSLTSKSTVGTVCLPTTSFVGQRCWVAGWGKNDFGAT
GAYQAIERQVDVPLIPNANCQAALQATRLGSSFVLSPTSFICAGGEAGKD
ACTGDGGSPLVCTSNGVWYVVGLVAWGIGCAQAGVPGVYVNVGTYLPWIQ
TTLTL*
BS11726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13318-PA | 405 | CG13318-PA | 1..405 | 1..405 | 2191 | 100 | Plus |
| CG4998-PA | 891 | CG4998-PA | 647..884 | 167..400 | 615 | 48.1 | Plus |
| CG4998-PB | 1185 | CG4998-PB | 941..1178 | 167..400 | 615 | 48.1 | Plus |
| CG5390-PB | 406 | CG5390-PB | 76..396 | 92..405 | 558 | 39.1 | Plus |
| CG5390-PA | 406 | CG5390-PA | 76..396 | 92..405 | 558 | 39.1 | Plus |
