Clone BS11727 Report

Search the DGRC for BS11727

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7465-RA
Protein status:BS11727.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11727.complete Sequence

998 bp assembled on 2006-11-01

GenBank Submission: FJ636944

> BS11727.complete
GAAGTTATCAGTCGACATGAAACTCTTCCTGGTCGCTTTTGCCGTGATCG
CAGCCGTGGCTGCCGATGTCAGCCACCTGCCCTCCAACGAGTACCTGCCT
CCCGTCCAGGAGCAGCAGATCATCGCCGGACCCAGCAACGAGTACCTGCC
TCCCGTGCAGGCCGAGTCTGCCCCCGCCCATGAGCTGGCCGATGATGGCT
ACCGGTACAAGACCCACAAGCGCGTGGTGGTCCGCCGCCACCGCCGTGAC
GTCAACGAGCTCTTCAACGAGTACCTGCCCCCCTTCGCAGCTCCTTCCAA
CGAGTACCTGGCTCCTGCTGAGGGTGCTCCTGAGACCATCTTGGCCGATG
ATGGATACCGTTACAAGACCCACAAGCGCGTGGTAACCCGCCGTCACCGT
CGTGATGTGAGCCACTTGCCCTCCAACGAGTACCTGCCCCCAGTCCAGGC
TGCTGCTCCTTCCAACGAGTATCTGCCCCCAGTGTCCGCCCCCGTCCAGG
TTGCTGCCCCAGCTCCCGCTCCAGTTCAGATCGCCGCCCCTGTCCAGCTG
GCCGCCCCCGCTCCTGTCGTGGTTGAGGCTGAGCCCGCCCATGAGCTGGC
CGATGACGGTTACCGTTACAAGACCCATCGTCGCGTTGTTTACCGCCGCC
ACCGCCGTGACGTCAACGAGCTCTCCAACGAGTACCTGCCCCCCTTCGCA
GCTCCTTCCAACGAGTACCTGGCTCCCGCTGAGACTGCTCCTGAGACCGA
CTTGGCCGTTGATGGATACCGCTACAAGACCCACAAGCGCGTGGTAACCC
GCCGTCACCGTCGTGATGTGAACGAGCTCTCCAACGAGTACTTGCCTCCC
GTGCAGTCTGCTCCCTCTGCCGAGTACCTTGCCCCCCAGGAAAACACCGT
CGAGGCGGCTCCCGCCCATGTCCTGGCTGATGATGGATACGTCTACAAGA
CCCACAAGCGCGTTGTGTTGCGCCGCCACTAAAAGCTTTCTAGACCAT

BS11727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7465-RA 966 CG7465-PA 1..966 17..982 4830 100 Plus
CG7465-RA 966 CG7465-PA 157..438 584..862 925 89.4 Plus
CG7465-RA 966 CG7465-PA 568..846 173..454 925 89.4 Plus
CG11350-RC 1371 CG11350-PC 889..982 350..443 335 90.4 Plus
CG7465-RA 966 CG7465-PA 170..267 753..850 295 86.7 Plus
CG7465-RA 966 CG7465-PA 737..834 186..283 295 86.7 Plus
CG11350-RC 1371 CG11350-PC 889..949 761..821 245 93.4 Plus
CG7465-RA 966 CG7465-PA 170..266 342..441 225 84 Plus
CG7465-RA 966 CG7465-PA 326..425 186..282 225 84 Plus
CG7465-RA 966 CG7465-PA 581..678 753..850 220 81.6 Plus
CG7465-RA 966 CG7465-PA 737..834 597..694 220 81.6 Plus
CG7465-RA 966 CG7465-PA 147..225 901..979 200 83.5 Plus
CG7465-RA 966 CG7465-PA 885..963 163..241 200 83.5 Plus
CG11350-RC 1371 CG11350-PC 580..649 335..404 200 85.7 Plus
CG11350-RC 1371 CG11350-PC 595..649 761..815 200 90.9 Plus
CG11350-RC 1371 CG11350-PC 889..944 194..249 190 89.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7465-RA 1126 CG7465-RA 49..1015 17..983 4835 100 Plus
CG7465-RA 1126 CG7465-RA 205..486 584..862 925 89.4 Plus
CG7465-RA 1126 CG7465-RA 616..894 173..454 925 89.4 Plus
CG11350-RC 1497 CG11350-RC 924..1017 350..443 335 90.4 Plus
CG7465-RA 1126 CG7465-RA 218..315 753..850 295 86.7 Plus
CG7465-RA 1126 CG7465-RA 785..882 186..283 295 86.7 Plus
CG11350-RC 1497 CG11350-RC 924..984 761..821 245 93.4 Plus
CG7465-RA 1126 CG7465-RA 218..314 342..441 225 84 Plus
CG7465-RA 1126 CG7465-RA 374..473 186..282 225 84 Plus
CG7465-RA 1126 CG7465-RA 629..726 753..850 220 81.6 Plus
CG7465-RA 1126 CG7465-RA 785..882 597..694 220 81.6 Plus
CG7465-RA 1126 CG7465-RA 195..273 901..979 200 83.5 Plus
CG7465-RA 1126 CG7465-RA 933..1011 163..241 200 83.5 Plus
CG11350-RC 1497 CG11350-RC 615..684 335..404 200 85.7 Plus
CG11350-RC 1497 CG11350-RC 630..684 761..815 200 90.9 Plus
CG11350-RC 1497 CG11350-RC 924..979 194..249 190 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4480412..4481376 19..983 4825 100 Plus
3L 28110227 3L 4480566..4480847 584..862 925 89.4 Plus
3L 28110227 3L 4480977..4481255 173..454 925 89.4 Plus
3L 28110227 3L 4483797..4483890 350..443 335 90.4 Plus
3L 28110227 3L 4480579..4480676 753..850 295 86.7 Plus
3L 28110227 3L 4481146..4481243 186..283 295 86.7 Plus
3L 28110227 3L 4483797..4483857 761..821 245 93.4 Plus
3L 28110227 3L 4480579..4480675 342..441 225 84 Plus
3L 28110227 3L 4480735..4480834 186..282 225 84 Plus
3L 28110227 3L 4480990..4481087 753..850 220 81.6 Plus
3L 28110227 3L 4481146..4481243 597..694 220 81.6 Plus
3L 28110227 3L 4480556..4480634 901..979 200 83.5 Plus
3L 28110227 3L 4481294..4481372 163..241 200 83.5 Plus
3L 28110227 3L 4483488..4483557 335..404 200 85.7 Plus
3L 28110227 3L 4483503..4483557 761..815 200 90.9 Plus
3L 28110227 3L 4483797..4483852 194..249 190 89.3 Plus
Blast to na_te.dros performed on 2014-11-27 15:42:32 has no hits.

BS11727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:46 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 1..966 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:42 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 40..1016 7..983 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:17 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 49..1012 17..980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:46 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 40..1016 7..983 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:30 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7465-RA 49..1012 17..980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:30 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4480411..4481373 17..980 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:17 Download gff for BS11727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4480411..4481373 17..980 99   Plus

BS11727.pep Sequence

Translation from 16 to 981

> BS11727.pep
MKLFLVAFAVIAAVAADVSHLPSNEYLPPVQEQQIIAGPSNEYLPPVQAE
SAPAHELADDGYRYKTHKRVVVRRHRRDVNELFNEYLPPFAAPSNEYLAP
AEGAPETILADDGYRYKTHKRVVTRRHRRDVSHLPSNEYLPPVQAAAPSN
EYLPPVSAPVQVAAPAPAPVQIAAPVQLAAPAPVVVEAEPAHELADDGYR
YKTHRRVVYRRHRRDVNELSNEYLPPFAAPSNEYLAPAETAPETDLAVDG
YRYKTHKRVVTRRHRRDVNELSNEYLPPVQSAPSAEYLAPQENTVEAAPA
HVLADDGYVYKTHKRVVLRRH*

BS11727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7465-PA 321 CG7465-PA 1..321 1..321 1680 100 Plus
CG13705-PA 432 CG13705-PA 67..432 17..321 548 41.7 Plus
CG32237-PA 911 CG32237-PA 578..855 17..320 457 42.9 Plus
CG32237-PA 911 CG32237-PA 410..687 17..320 452 41.1 Plus
CG11350-PC 456 CG11350-PC 101..454 12..321 449 39.7 Plus
CG32237-PA 911 CG32237-PA 1..295 1..320 448 39 Plus
CG32237-PA 911 CG32237-PA 186..519 17..320 446 39.4 Plus
CG32237-PA 911 CG32237-PA 130..407 17..320 442 40.9 Plus
CG11350-PC 456 CG11350-PC 1..353 1..304 405 35.8 Plus
CG11350-PC 456 CG11350-PC 140..455 7..213 379 36.5 Plus
CG32237-PA 911 CG32237-PA 690..909 17..266 341 40.9 Plus
CG11131-PB 229 CG11131-PB 29..229 93..321 338 41.6 Plus
CG13705-PA 432 CG13705-PA 16..156 145..320 283 46.9 Plus
CG11350-PC 456 CG11350-PC 16..214 130..321 216 36.1 Plus