BS11727.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ636944
> BS11727.complete
GAAGTTATCAGTCGACATGAAACTCTTCCTGGTCGCTTTTGCCGTGATCG
CAGCCGTGGCTGCCGATGTCAGCCACCTGCCCTCCAACGAGTACCTGCCT
CCCGTCCAGGAGCAGCAGATCATCGCCGGACCCAGCAACGAGTACCTGCC
TCCCGTGCAGGCCGAGTCTGCCCCCGCCCATGAGCTGGCCGATGATGGCT
ACCGGTACAAGACCCACAAGCGCGTGGTGGTCCGCCGCCACCGCCGTGAC
GTCAACGAGCTCTTCAACGAGTACCTGCCCCCCTTCGCAGCTCCTTCCAA
CGAGTACCTGGCTCCTGCTGAGGGTGCTCCTGAGACCATCTTGGCCGATG
ATGGATACCGTTACAAGACCCACAAGCGCGTGGTAACCCGCCGTCACCGT
CGTGATGTGAGCCACTTGCCCTCCAACGAGTACCTGCCCCCAGTCCAGGC
TGCTGCTCCTTCCAACGAGTATCTGCCCCCAGTGTCCGCCCCCGTCCAGG
TTGCTGCCCCAGCTCCCGCTCCAGTTCAGATCGCCGCCCCTGTCCAGCTG
GCCGCCCCCGCTCCTGTCGTGGTTGAGGCTGAGCCCGCCCATGAGCTGGC
CGATGACGGTTACCGTTACAAGACCCATCGTCGCGTTGTTTACCGCCGCC
ACCGCCGTGACGTCAACGAGCTCTCCAACGAGTACCTGCCCCCCTTCGCA
GCTCCTTCCAACGAGTACCTGGCTCCCGCTGAGACTGCTCCTGAGACCGA
CTTGGCCGTTGATGGATACCGCTACAAGACCCACAAGCGCGTGGTAACCC
GCCGTCACCGTCGTGATGTGAACGAGCTCTCCAACGAGTACTTGCCTCCC
GTGCAGTCTGCTCCCTCTGCCGAGTACCTTGCCCCCCAGGAAAACACCGT
CGAGGCGGCTCCCGCCCATGTCCTGGCTGATGATGGATACGTCTACAAGA
CCCACAAGCGCGTTGTGTTGCGCCGCCACTAAAAGCTTTCTAGACCAT
BS11727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7465-RA | 966 | CG7465-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
CG7465-RA | 966 | CG7465-PA | 157..438 | 584..862 | 925 | 89.4 | Plus |
CG7465-RA | 966 | CG7465-PA | 568..846 | 173..454 | 925 | 89.4 | Plus |
CG11350-RC | 1371 | CG11350-PC | 889..982 | 350..443 | 335 | 90.4 | Plus |
CG7465-RA | 966 | CG7465-PA | 170..267 | 753..850 | 295 | 86.7 | Plus |
CG7465-RA | 966 | CG7465-PA | 737..834 | 186..283 | 295 | 86.7 | Plus |
CG11350-RC | 1371 | CG11350-PC | 889..949 | 761..821 | 245 | 93.4 | Plus |
CG7465-RA | 966 | CG7465-PA | 170..266 | 342..441 | 225 | 84 | Plus |
CG7465-RA | 966 | CG7465-PA | 326..425 | 186..282 | 225 | 84 | Plus |
CG7465-RA | 966 | CG7465-PA | 581..678 | 753..850 | 220 | 81.6 | Plus |
CG7465-RA | 966 | CG7465-PA | 737..834 | 597..694 | 220 | 81.6 | Plus |
CG7465-RA | 966 | CG7465-PA | 147..225 | 901..979 | 200 | 83.5 | Plus |
CG7465-RA | 966 | CG7465-PA | 885..963 | 163..241 | 200 | 83.5 | Plus |
CG11350-RC | 1371 | CG11350-PC | 580..649 | 335..404 | 200 | 85.7 | Plus |
CG11350-RC | 1371 | CG11350-PC | 595..649 | 761..815 | 200 | 90.9 | Plus |
CG11350-RC | 1371 | CG11350-PC | 889..944 | 194..249 | 190 | 89.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7465-RA | 1126 | CG7465-RA | 49..1015 | 17..983 | 4835 | 100 | Plus |
CG7465-RA | 1126 | CG7465-RA | 205..486 | 584..862 | 925 | 89.4 | Plus |
CG7465-RA | 1126 | CG7465-RA | 616..894 | 173..454 | 925 | 89.4 | Plus |
CG11350-RC | 1497 | CG11350-RC | 924..1017 | 350..443 | 335 | 90.4 | Plus |
CG7465-RA | 1126 | CG7465-RA | 218..315 | 753..850 | 295 | 86.7 | Plus |
CG7465-RA | 1126 | CG7465-RA | 785..882 | 186..283 | 295 | 86.7 | Plus |
CG11350-RC | 1497 | CG11350-RC | 924..984 | 761..821 | 245 | 93.4 | Plus |
CG7465-RA | 1126 | CG7465-RA | 218..314 | 342..441 | 225 | 84 | Plus |
CG7465-RA | 1126 | CG7465-RA | 374..473 | 186..282 | 225 | 84 | Plus |
CG7465-RA | 1126 | CG7465-RA | 629..726 | 753..850 | 220 | 81.6 | Plus |
CG7465-RA | 1126 | CG7465-RA | 785..882 | 597..694 | 220 | 81.6 | Plus |
CG7465-RA | 1126 | CG7465-RA | 195..273 | 901..979 | 200 | 83.5 | Plus |
CG7465-RA | 1126 | CG7465-RA | 933..1011 | 163..241 | 200 | 83.5 | Plus |
CG11350-RC | 1497 | CG11350-RC | 615..684 | 335..404 | 200 | 85.7 | Plus |
CG11350-RC | 1497 | CG11350-RC | 630..684 | 761..815 | 200 | 90.9 | Plus |
CG11350-RC | 1497 | CG11350-RC | 924..979 | 194..249 | 190 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4480412..4481376 | 19..983 | 4825 | 100 | Plus |
3L | 28110227 | 3L | 4480566..4480847 | 584..862 | 925 | 89.4 | Plus |
3L | 28110227 | 3L | 4480977..4481255 | 173..454 | 925 | 89.4 | Plus |
3L | 28110227 | 3L | 4483797..4483890 | 350..443 | 335 | 90.4 | Plus |
3L | 28110227 | 3L | 4480579..4480676 | 753..850 | 295 | 86.7 | Plus |
3L | 28110227 | 3L | 4481146..4481243 | 186..283 | 295 | 86.7 | Plus |
3L | 28110227 | 3L | 4483797..4483857 | 761..821 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 4480579..4480675 | 342..441 | 225 | 84 | Plus |
3L | 28110227 | 3L | 4480735..4480834 | 186..282 | 225 | 84 | Plus |
3L | 28110227 | 3L | 4480990..4481087 | 753..850 | 220 | 81.6 | Plus |
3L | 28110227 | 3L | 4481146..4481243 | 597..694 | 220 | 81.6 | Plus |
3L | 28110227 | 3L | 4480556..4480634 | 901..979 | 200 | 83.5 | Plus |
3L | 28110227 | 3L | 4481294..4481372 | 163..241 | 200 | 83.5 | Plus |
3L | 28110227 | 3L | 4483488..4483557 | 335..404 | 200 | 85.7 | Plus |
3L | 28110227 | 3L | 4483503..4483557 | 761..815 | 200 | 90.9 | Plus |
3L | 28110227 | 3L | 4483797..4483852 | 194..249 | 190 | 89.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:42:32 has no hits.
BS11727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:46 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7465-RA | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:42 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7465-RA | 40..1016 | 7..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:17 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7465-RA | 49..1012 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:46 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7465-RA | 40..1016 | 7..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:30 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7465-RA | 49..1012 | 17..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:30 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4480411..4481373 | 17..980 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:17 Download gff for
BS11727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4480411..4481373 | 17..980 | 99 | | Plus |
BS11727.pep Sequence
Translation from 16 to 981
> BS11727.pep
MKLFLVAFAVIAAVAADVSHLPSNEYLPPVQEQQIIAGPSNEYLPPVQAE
SAPAHELADDGYRYKTHKRVVVRRHRRDVNELFNEYLPPFAAPSNEYLAP
AEGAPETILADDGYRYKTHKRVVTRRHRRDVSHLPSNEYLPPVQAAAPSN
EYLPPVSAPVQVAAPAPAPVQIAAPVQLAAPAPVVVEAEPAHELADDGYR
YKTHRRVVYRRHRRDVNELSNEYLPPFAAPSNEYLAPAETAPETDLAVDG
YRYKTHKRVVTRRHRRDVNELSNEYLPPVQSAPSAEYLAPQENTVEAAPA
HVLADDGYVYKTHKRVVLRRH*
BS11727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7465-PA | 321 | CG7465-PA | 1..321 | 1..321 | 1680 | 100 | Plus |
CG13705-PA | 432 | CG13705-PA | 67..432 | 17..321 | 548 | 41.7 | Plus |
CG32237-PA | 911 | CG32237-PA | 578..855 | 17..320 | 457 | 42.9 | Plus |
CG32237-PA | 911 | CG32237-PA | 410..687 | 17..320 | 452 | 41.1 | Plus |
CG11350-PC | 456 | CG11350-PC | 101..454 | 12..321 | 449 | 39.7 | Plus |
CG32237-PA | 911 | CG32237-PA | 1..295 | 1..320 | 448 | 39 | Plus |
CG32237-PA | 911 | CG32237-PA | 186..519 | 17..320 | 446 | 39.4 | Plus |
CG32237-PA | 911 | CG32237-PA | 130..407 | 17..320 | 442 | 40.9 | Plus |
CG11350-PC | 456 | CG11350-PC | 1..353 | 1..304 | 405 | 35.8 | Plus |
CG11350-PC | 456 | CG11350-PC | 140..455 | 7..213 | 379 | 36.5 | Plus |
CG32237-PA | 911 | CG32237-PA | 690..909 | 17..266 | 341 | 40.9 | Plus |
CG11131-PB | 229 | CG11131-PB | 29..229 | 93..321 | 338 | 41.6 | Plus |
CG13705-PA | 432 | CG13705-PA | 16..156 | 145..320 | 283 | 46.9 | Plus |
CG11350-PC | 456 | CG11350-PC | 16..214 | 130..321 | 216 | 36.1 | Plus |