BS11728.complete Sequence
1697 bp assembled on 2009-12-07
GenBank Submission: KX806060
> BS11728.complete
GAAGTTATCAGTCGACATGCCAGTCTCGGCGAAACGCTTACTTCGGAATT
TTCAGTTCACCAGCTGCGATCGGAATGGCAAAATGTTGATTCACCTGCTG
CTCATCGTTTCGCTTCTGGAAGCAATTGGCGCCTTTCAGCCGGAGTTCGT
GGAGAGCATTTCCAACGTGTCCGTGGCCGTCGGACGCGATGCAACCTTCA
CGTGTCACGTCCGACACTTGGGCGGCTATCGGGTGGGCTGGCTCAAGGCC
GACACCAAGGCCATTCAAGCCATCCACGAGAACGTAATCACGCACAATCC
TCGCGTCACGGTCAGTCACTTGGACCAGAACACGTGGAATTTGCATATAA
AGGCGGTTTCCGAGGAGGATCGCGGCGGTTATATGTGCCAACTGAACACG
GATCCGATGAAGAGTCAGATTGGCTTCCTGGACGTCGTGATTCCGCCGGA
CTTCATCAGCGAGGACACCTCATCCGATGTGATTGTGCCGGAGGGCAGTT
CCGTGCGATTGACATGTCGGGCTCGCGGTTATCCGGAACCGATTGTCACC
TGGCGCCGCGAAGATGGCAACGAAATTGTCCTGAAGGACAATGTGGGCAC
TAAGACCCTAGCGCCCTCTTTTCGCGGCGAGGTGCTAAAGCTATCAAAGA
TCTCGAGGAACGAGATGGGCTCCTATCTGTGCATCGCCTCCAACGGAGTA
CCGCCATCGGTCTCAAAGCGCATCTCCCTCAGCATACACTTTCATCCGGT
CATCCAAGTGCCGAATCAATTAGTCGGCGCACCACTTGGCACTGATGTCC
AAATCGAGTGTCACGTCGAAGCCTCGCCCAAATCAATTAACTACTGGATT
AAGGACACGGGTGAGATGATTGTGACATCGGGCAAGTATCATGTGCAGGA
GAGCTCGCAGTCCATGTACGAGACCAAAATGTCAATGATAGTCAGGAAGT
TTCAAAAGGATGATGTCGGATCCTATCGCTGCATTGCCAAAAACTCACTC
GGCGAAGTCGACAGCAGTATCCGTTTATACGAAATCCCCGGACCGAATCG
TAATAAAAATCCGCTGAACGGCGGCGGAAAAGGAGGTGGAGCGGGCGGAA
GCCTGGATGCGGATGCCAATGACATTTTGAAGCAGAAACAACAAGTCAAA
GTCACTTATCAGCCGGAGGACGAGGAGCTGCAGTACGGATCCGTCGAGGA
TTTCGAGGCGGAAGGCGGCGAGGGCGGGGGCCTGACGCCGTTATCGCCGC
ACGTTTACTACACCAGCGGCAATAAACCGGCCACACATAAGCCGGGCAAC
TCCGGCGGCAATCAGCATCTACATCAGCAGCACCACCATCATCACCACCA
CAACAACAACAACAACAACCAGCAACACAGTGGTGGGCCAGGTGGTGGCC
CAACTGGCGGTGATGCGGGTTCACTTGGTGGCGAAATGGGAGGCATCACC
CGCAAGCCACCGCCATATTATGGTGGCAATACGGAAGTGCGAGGCCCCAT
TGACAACAACGAAATGAGCTCAGGCTCCGGAGACTCGCGATTGTGTCGAG
GTCACCACTTACCCATTCTTCTCCTTCCATTCGCGCGGCTCATCCTGGTC
AGGAGTTGGCACTGCCGACATACGTTCTTAATGGGCTTGTCGCAGGCTTG
CCTGCCCGGACTTTTGCTCAGCCTCTTATAAAAGCTTTCTAGACCAT
BS11728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32791-RC | 1665 | CG32791-PC | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| CG32791-RA | 1665 | CG32791-PA | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| CG32791-RB | 1299 | CG32791-PB | 1..1299 | 383..1681 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32791-RC | 7668 | CG32791-RC | 246..1910 | 17..1681 | 8325 | 100 | Plus |
| CG32791-RA | 3576 | CG32791-RA | 246..1910 | 17..1681 | 8325 | 100 | Plus |
| CG32791-RB | 4540 | CG32791-RB | 1314..2874 | 121..1681 | 7805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3513003..3513653 | 1681..1031 | 3255 | 100 | Minus |
| X | 23542271 | X | 3523634..3523820 | 418..232 | 935 | 100 | Minus |
| X | 23542271 | X | 3514002..3514173 | 1031..860 | 860 | 100 | Minus |
| X | 23542271 | X | 3519825..3519955 | 740..610 | 655 | 100 | Minus |
| X | 23542271 | X | 3514866..3514987 | 862..741 | 610 | 100 | Minus |
| X | 23542271 | X | 3523920..3524033 | 234..121 | 570 | 100 | Minus |
| X | 23542271 | X | 3530315..3530420 | 122..17 | 530 | 100 | Minus |
| X | 23542271 | X | 3522211..3522314 | 520..417 | 520 | 100 | Minus |
| X | 23542271 | X | 3520042..3520134 | 611..519 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 5433780..5433839 | 665..724 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:06 has no hits.
BS11728.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:08 Download gff for
BS11728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 243..1905 | 17..1679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:57 Download gff for
BS11728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 246..1908 | 17..1679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:45 Download gff for
BS11728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 243..1905 | 17..1679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:19 Download gff for
BS11728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 246..1908 | 17..1679 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:19 Download gff for
BS11728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3523634..3523819 | 233..418 | 100 | <- | Minus |
| X | 3523922..3524031 | 123..232 | 100 | <- | Minus |
| X | 3530315..3530420 | 17..122 | 100 | | Minus |
| X | 3522212..3522312 | 419..519 | 100 | <- | Minus |
| X | 3513005..3513652 | 1032..1679 | 100 | <- | Minus |
| X | 3514002..3514172 | 861..1031 | 100 | <- | Minus |
| X | 3514868..3514987 | 741..860 | 100 | <- | Minus |
| X | 3519825..3519953 | 612..740 | 100 | <- | Minus |
| X | 3520042..3520133 | 520..611 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:57 Download gff for
BS11728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3407038..3407685 | 1032..1679 | 100 | <- | Minus |
| arm_X | 3408035..3408205 | 861..1031 | 100 | <- | Minus |
| arm_X | 3408901..3409020 | 741..860 | 100 | <- | Minus |
| arm_X | 3413858..3413986 | 612..740 | 100 | <- | Minus |
| arm_X | 3414075..3414166 | 520..611 | 100 | <- | Minus |
| arm_X | 3416245..3416345 | 419..519 | 100 | <- | Minus |
| arm_X | 3417667..3417852 | 233..418 | 100 | <- | Minus |
| arm_X | 3417955..3418064 | 123..232 | 100 | <- | Minus |
| arm_X | 3424348..3424453 | 17..122 | 100 | | Minus |
BS11728.pep Sequence
Translation from 16 to 1680
> BS11728.pep
MPVSAKRLLRNFQFTSCDRNGKMLIHLLLIVSLLEAIGAFQPEFVESISN
VSVAVGRDATFTCHVRHLGGYRVGWLKADTKAIQAIHENVITHNPRVTVS
HLDQNTWNLHIKAVSEEDRGGYMCQLNTDPMKSQIGFLDVVIPPDFISED
TSSDVIVPEGSSVRLTCRARGYPEPIVTWRREDGNEIVLKDNVGTKTLAP
SFRGEVLKLSKISRNEMGSYLCIASNGVPPSVSKRISLSIHFHPVIQVPN
QLVGAPLGTDVQIECHVEASPKSINYWIKDTGEMIVTSGKYHVQESSQSM
YETKMSMIVRKFQKDDVGSYRCIAKNSLGEVDSSIRLYEIPGPNRNKNPL
NGGGKGGGAGGSLDADANDILKQKQQVKVTYQPEDEELQYGSVEDFEAEG
GEGGGLTPLSPHVYYTSGNKPATHKPGNSGGNQHLHQQHHHHHHHNNNNN
NQQHSGGPGGGPTGGDAGSLGGEMGGITRKPPPYYGGNTEVRGPIDNNEM
SSGSGDSRLCRGHHLPILLLPFARLILVRSWHCRHTFLMGLSQACLPGLL
LSLL*
BS11728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32791-PC | 554 | CG32791-PC | 1..554 | 1..554 | 2958 | 100 | Plus |
| CG32791-PA | 554 | CG32791-PA | 1..554 | 1..554 | 2958 | 100 | Plus |
| CG32791-PB | 432 | CG32791-PB | 1..432 | 123..554 | 2321 | 100 | Plus |
| CG42343-PG | 534 | CG42343-PG | 72..391 | 24..345 | 1016 | 56.8 | Plus |
| CG42343-PF | 555 | CG42343-PF | 84..412 | 28..345 | 997 | 54.7 | Plus |
