Clone Sequence Records
BS11730.5prime Sequence
321 bp (321 high quality bases) assembled on 2006-06-16
> BS11730.5prime
GAAGTTATCAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCG
AAGCAGAGCTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTT
GCCCCACCGCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCT
GGCCGAATTCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCC
AGCAGCAATGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAA
ATCTACCCAAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCA
ATATTAAAAGCTTTCTAGACC
BS11730.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33207-PA | 291 | pxb-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
| CG33207-PB | 1911 | pxb-RB | 1..222 | 17..238 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pxb-RC | 5086 | CG33207-RC | 599..820 | 17..238 | 1110 | 100 | Plus |
| pxb-RB | 3024 | CG33207-RB | 599..820 | 17..238 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15671959..15672250 | 17..308 | 1460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:35:25 has no hits.
BS11730.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:05 Download gff for
BS11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33207-PA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:37:42 Download gff for
BS11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RB | 596..827 | 12..246 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:46:39 Download gff for
BS11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RB | 596..827 | 12..246 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:46:39 Download gff for
BS11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15671956..15672260 | 12..317 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:37:42 Download gff for
BS11730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11497678..11497982 | 12..317 | 98 | | Plus |
BS11730.3prime Sequence
321 bp (321 high quality bases) assembled on 2006-06-16
> BS11730.3prime
ATGGTCTAGAAAGCTTTTAATATTGGAGAATTTTTCGAGTTTTTATAATG
GGCTTATCATATTTTGGGTAGATTTTCCCACTTACCGGCATTGCCTGGCA
GACATCGCTCTCCCATTGCTGCTGGGCCAATTGCTCCTCGTTGCAATCCT
GCGGCACCACCGTGAATTCGGCCAGGGCCGGCGGTCTTGGTGGCGGTGGG
ATGAGGAACTGGGGCGGTGGGGCAAGGGGCGTGCCCGAGCAATCGTCGCA
GTCGAACATGAAGAGCTCTGCTTCGGACAGTTCCATCATATCCAGCATTT
TCCACATGTCGACTGATAACT
BS11730.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33207-PA | 291 | pxb-RA | 1..291 | 307..17 | 1455 | 100 | Minus |
| CG33207-PB | 1911 | pxb-RB | 1..222 | 307..86 | 1110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pxb-RC | 5086 | CG33207-RC | 599..820 | 307..86 | 1110 | 100 | Minus |
| pxb-RB | 3024 | CG33207-RB | 599..820 | 307..86 | 1110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15671959..15672250 | 307..16 | 1460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:35:03 has no hits.
BS11730.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:05 Download gff for
BS11730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33207-PA | 1..291 | 17..307 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:47 Download gff for
BS11730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RB | 596..827 | 78..312 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:16 Download gff for
BS11730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RB | 596..827 | 78..312 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:16 Download gff for
BS11730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15671956..15672260 | 7..312 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:47 Download gff for
BS11730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11497678..11497982 | 7..312 | 98 | | Minus |
BS11730.complete Sequence
323 bp assembled on 2007-10-17
GenBank Submission: FJ636945
> BS11730.complete
GAAGTTATCAGTCGACATGTGGAAAATGCTGGATATGATGGAACTGTCCG
AAGCAGAGCTCTTCATGTTCGACTGCGACGATTGCTCGGGCACGCCCCTT
GCCCCACCGCCCCAGTTCCTCATCCCACCGCCACCAAGACCGCCGGCCCT
GGCCGAATTCACGGTGGTGCCGCAGGATTGCAACGAGGAGCAATTGGCCC
AGCAGCAATGGGAGAGCGATGTCTGCCAGGCAATGCCGGTAAGTGGGAAA
ATCTACCCAAAATATGATAAGCCCATTATAAAAACTCGAAAAATTCTCCA
ATATTAAAAGCTTTCTAGACCAT
BS11730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pxb-RC | 1911 | CG33207-PC | 1..222 | 17..238 | 1110 | 100 | Plus |
| pxb-RB | 1911 | CG33207-PB | 1..222 | 17..238 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pxb-RC | 5086 | CG33207-RC | 599..820 | 17..238 | 1110 | 100 | Plus |
| pxb-RB | 3024 | CG33207-RB | 599..820 | 17..238 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15671959..15672250 | 17..308 | 1460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:51:17 has no hits.
BS11730.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:16 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RA | 1..291 | 17..307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:07 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RA | 593..897 | 12..317 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:59 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RB | 599..827 | 17..246 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:48 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RA | 596..884 | 17..305 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:07 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pxb-RB | 599..827 | 17..246 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:07 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15671959..15672247 | 17..305 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:59 Download gff for
BS11730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11497681..11497969 | 17..305 | 100 | | Plus |
BS11730.pep Sequence
Translation from 16 to 306
> BS11730.pep
MWKMLDMMELSEAELFMFDCDDCSGTPLAPPPQFLIPPPPRPPALAEFTV
VPQDCNEEQLAQQQWESDVCQAMPVSGKIYPKYDKPIIKTRKILQY*
BS11730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pxb-PC | 636 | CG33207-PC | 1..75 | 1..75 | 417 | 98.7 | Plus |
| pxb-PB | 636 | CG33207-PB | 1..75 | 1..75 | 417 | 98.7 | Plus |
