Clone Sequence Records
BS11732.3prime Sequence
774 bp (701 high quality bases) assembled on 2006-06-16
> BS11732.3prime
ATGGTCTAGAAAGCTTTTATGTTGTATTTATTGAGCCATCGCTTTCGATG
CGCGTGATCTCCAGAAGATGAATAGTGTGTCCGCCCATAAACTCCAGCAG
ATCCACTCCCGACTCCTTGCCAATGTCCTCCATGCTGATGGGTAAAGCCT
GCAGCTTCCACTTCTTGAGCAGCGCCTCTATGGACCAGTCGGCGCTCCGC
TCCTGGTATGTAAATATAAATTTGGCCCCGGCATTTCGCTCCAGCAGAAA
AGCAACTGTGACCACGATATCCTCGAACACGCTGGGATCGTAGAAGCAGT
CTGCTGCAATGATAAGGTCCAGAGGCGGCAGTCGGAACACGCTGTTCAGC
AGCAGGCCCCAACTCAGGCCCACCACATCGATATCAACGCCCGGCTGCAG
TTGATTGGCCAGGCAGGACTTTCGGATATGGGCCAGTGACTTGGGCAGAA
TGCAGTTGTCAGTAAGTACCACTTGGGCGCGGCATTTGGCCGCCAGAATG
CCGGGCAGGGCGGTGCCGCTTCCCAGCTCCAGGATGCGCTTGCCCGCCAG
TGTCTGTCGGCGCTCCCACAGGAAGTGGGCTAAAATTGGTGCGCAAGGCC
ATGTGTAGAAGGAGTAGGCACCCTGAAGCAGCTCAGGTATTTTGATCTCC
AGTCGCTCGGCGGGTGATCCGCTGAAGACAAACTTGCGGATATGCTCGGC
AGTGGCTGTGGCCGCCACAATGTCATTGTCCTCGCTGCCGCTCTTCATGT
GGAAACGCATGTCGACTGATAACT
BS11732.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-PA | 744 | CG5013-RA | 1..744 | 760..17 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 973 | CG5013-RA | 119..862 | 760..17 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16049966..16050582 | 633..17 | 3085 | 100 | Minus |
3R | 32079331 | 3R | 16049788..16049916 | 760..632 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:23:02 has no hits.
BS11732.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:06 Download gff for
BS11732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-PA | 1..744 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:41 Download gff for
BS11732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..867 | 11..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:36 Download gff for
BS11732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..867 | 11..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:36 Download gff for
BS11732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16049788..16049916 | 632..760 | 100 | -> | Minus |
3R | 16049968..16050587 | 11..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:41 Download gff for
BS11732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11875510..11875638 | 632..760 | 100 | -> | Minus |
arm_3R | 11875690..11876309 | 11..631 | 99 | | Minus |
BS11732.5prime Sequence
774 bp (774 high quality bases) assembled on 2006-06-16
> BS11732.5prime
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACATAAAAGCTTTCTAGACC
BS11732.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-PA | 744 | CG5013-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 973 | CG5013-RA | 119..862 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16049966..16050582 | 144..760 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 16049788..16049916 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:54:28 has no hits.
BS11732.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:06 Download gff for
BS11732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:45 Download gff for
BS11732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..867 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:40 Download gff for
BS11732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..867 | 17..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:40 Download gff for
BS11732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16049788..16049916 | 17..145 | 100 | -> | Plus |
3R | 16049968..16050587 | 146..766 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:45 Download gff for
BS11732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11875510..11875638 | 17..145 | 100 | -> | Plus |
arm_3R | 11875690..11876309 | 146..766 | 99 | | Plus |
BS11732.complete Sequence
776 bp assembled on 2006-11-01
GenBank Submission: FJ636946
> BS11732.complete
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACATAAAAGCTTTCTAGACCAT
BS11732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 744 | CG5013-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-RA | 973 | CG5013-RA | 119..862 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16049966..16050582 | 144..760 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 16049788..16049916 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:00:59 has no hits.
BS11732.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:31 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:26 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 118..866 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:12 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..860 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:31 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 118..866 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:23 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5013-RA | 119..860 | 17..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:23 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16049788..16049916 | 17..145 | 100 | -> | Plus |
3R | 16049968..16050580 | 146..758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:12 Download gff for
BS11732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11875510..11875638 | 17..145 | 100 | -> | Plus |
arm_3R | 11875690..11876302 | 146..758 | 100 | | Plus |
BS11732.pep Sequence
Translation from 16 to 759
> BS11732.pep
MRFHMKSGSEDNDIVAATATAEHIRKFVFSGSPAERLEIKIPELLQGAYS
FYTWPCAPILAHFLWERRQTLAGKRILELGSGTALPGILAAKCRAQVVLT
DNCILPKSLAHIRKSCLANQLQPGVDIDVVGLSWGLLLNSVFRLPPLDLI
IAADCFYDPSVFEDIVVTVAFLLERNAGAKFIFTYQERSADWSIEALLKK
WKLQALPISMEDIGKESGVDLLEFMGGHTIHLLEITRIESDGSINTT*
BS11732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5013-PA | 247 | CG5013-PA | 1..247 | 1..247 | 1274 | 100 | Plus |