Clone BS11732 Report

Search the DGRC for BS11732

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG5013-RA
Protein status:BS11732.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11732.3prime Sequence

774 bp (701 high quality bases) assembled on 2006-06-16

> BS11732.3prime
ATGGTCTAGAAAGCTTTTATGTTGTATTTATTGAGCCATCGCTTTCGATG
CGCGTGATCTCCAGAAGATGAATAGTGTGTCCGCCCATAAACTCCAGCAG
ATCCACTCCCGACTCCTTGCCAATGTCCTCCATGCTGATGGGTAAAGCCT
GCAGCTTCCACTTCTTGAGCAGCGCCTCTATGGACCAGTCGGCGCTCCGC
TCCTGGTATGTAAATATAAATTTGGCCCCGGCATTTCGCTCCAGCAGAAA
AGCAACTGTGACCACGATATCCTCGAACACGCTGGGATCGTAGAAGCAGT
CTGCTGCAATGATAAGGTCCAGAGGCGGCAGTCGGAACACGCTGTTCAGC
AGCAGGCCCCAACTCAGGCCCACCACATCGATATCAACGCCCGGCTGCAG
TTGATTGGCCAGGCAGGACTTTCGGATATGGGCCAGTGACTTGGGCAGAA
TGCAGTTGTCAGTAAGTACCACTTGGGCGCGGCATTTGGCCGCCAGAATG
CCGGGCAGGGCGGTGCCGCTTCCCAGCTCCAGGATGCGCTTGCCCGCCAG
TGTCTGTCGGCGCTCCCACAGGAAGTGGGCTAAAATTGGTGCGCAAGGCC
ATGTGTAGAAGGAGTAGGCACCCTGAAGCAGCTCAGGTATTTTGATCTCC
AGTCGCTCGGCGGGTGATCCGCTGAAGACAAACTTGCGGATATGCTCGGC
AGTGGCTGTGGCCGCCACAATGTCATTGTCCTCGCTGCCGCTCTTCATGT
GGAAACGCATGTCGACTGATAACT

BS11732.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-PA 744 CG5013-RA 1..744 760..17 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 973 CG5013-RA 119..862 760..17 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16049966..16050582 633..17 3085 100 Minus
3R 32079331 3R 16049788..16049916 760..632 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:23:02 has no hits.

BS11732.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:06 Download gff for BS11732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-PA 1..744 17..760 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:41 Download gff for BS11732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..867 11..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:36 Download gff for BS11732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..867 11..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:36 Download gff for BS11732.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16049788..16049916 632..760 100 -> Minus
3R 16049968..16050587 11..631 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:41 Download gff for BS11732.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11875510..11875638 632..760 100 -> Minus
arm_3R 11875690..11876309 11..631 99   Minus

BS11732.5prime Sequence

774 bp (774 high quality bases) assembled on 2006-06-16

> BS11732.5prime
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACATAAAAGCTTTCTAGACC

BS11732.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-PA 744 CG5013-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 973 CG5013-RA 119..862 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16049966..16050582 144..760 3085 100 Plus
3R 32079331 3R 16049788..16049916 17..145 645 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:54:28 has no hits.

BS11732.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:06 Download gff for BS11732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-PA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:45 Download gff for BS11732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..867 17..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:40 Download gff for BS11732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..867 17..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:40 Download gff for BS11732.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16049788..16049916 17..145 100 -> Plus
3R 16049968..16050587 146..766 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:45 Download gff for BS11732.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11875510..11875638 17..145 100 -> Plus
arm_3R 11875690..11876309 146..766 99   Plus

BS11732.complete Sequence

776 bp assembled on 2006-11-01

GenBank Submission: FJ636946

> BS11732.complete
GAAGTTATCAGTCGACATGCGTTTCCACATGAAGAGCGGCAGCGAGGACA
ATGACATTGTGGCGGCCACAGCCACTGCCGAGCATATCCGCAAGTTTGTC
TTCAGCGGATCACCCGCCGAGCGACTGGAGATCAAAATACCTGAGCTGCT
TCAGGGTGCCTACTCCTTCTACACATGGCCTTGCGCACCAATTTTAGCCC
ACTTCCTGTGGGAGCGCCGACAGACACTGGCGGGCAAGCGCATCCTGGAG
CTGGGAAGCGGCACCGCCCTGCCCGGCATTCTGGCGGCCAAATGCCGCGC
CCAAGTGGTACTTACTGACAACTGCATTCTGCCCAAGTCACTGGCCCATA
TCCGAAAGTCCTGCCTGGCCAATCAACTGCAGCCGGGCGTTGATATCGAT
GTGGTGGGCCTGAGTTGGGGCCTGCTGCTGAACAGCGTGTTCCGACTGCC
GCCTCTGGACCTTATCATTGCAGCAGACTGCTTCTACGATCCCAGCGTGT
TCGAGGATATCGTGGTCACAGTTGCTTTTCTGCTGGAGCGAAATGCCGGG
GCCAAATTTATATTTACATACCAGGAGCGGAGCGCCGACTGGTCCATAGA
GGCGCTGCTCAAGAAGTGGAAGCTGCAGGCTTTACCCATCAGCATGGAGG
ACATTGGCAAGGAGTCGGGAGTGGATCTGCTGGAGTTTATGGGCGGACAC
ACTATTCATCTTCTGGAGATCACGCGCATCGAAAGCGATGGCTCAATAAA
TACAACATAAAAGCTTTCTAGACCAT

BS11732.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 744 CG5013-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-RA 973 CG5013-RA 119..862 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16049966..16050582 144..760 3085 100 Plus
3R 32079331 3R 16049788..16049916 17..145 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:00:59 has no hits.

BS11732.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:31 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:26 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 118..866 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:12 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..860 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:31 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 118..866 17..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:23 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
CG5013-RA 119..860 17..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:23 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16049788..16049916 17..145 100 -> Plus
3R 16049968..16050580 146..758 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:12 Download gff for BS11732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11875510..11875638 17..145 100 -> Plus
arm_3R 11875690..11876302 146..758 100   Plus

BS11732.pep Sequence

Translation from 16 to 759

> BS11732.pep
MRFHMKSGSEDNDIVAATATAEHIRKFVFSGSPAERLEIKIPELLQGAYS
FYTWPCAPILAHFLWERRQTLAGKRILELGSGTALPGILAAKCRAQVVLT
DNCILPKSLAHIRKSCLANQLQPGVDIDVVGLSWGLLLNSVFRLPPLDLI
IAADCFYDPSVFEDIVVTVAFLLERNAGAKFIFTYQERSADWSIEALLKK
WKLQALPISMEDIGKESGVDLLEFMGGHTIHLLEITRIESDGSINTT*

BS11732.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5013-PA 247 CG5013-PA 1..247 1..247 1274 100 Plus