Clone Sequence Records
BS11735.3prime Sequence
462 bp (462 high quality bases) assembled on 2006-06-16
> BS11735.3prime
ATGGTCTAGAAAGCTTCTACTTAAAAATGCTGGTGTAGTACTCCTCCTCC
AGGTCGTACAAGTCCATGGCCATTTCGTCCCTAAGTTTCATCAGCTTCTT
GTCGCACTCGCTCTGTGTGTTCCTGAACAGCTGCGAATTGTTTGTGATGG
CCTCGTTGACCGAGTGAAAGTCGTTGAGGATTAGGTACTGTTTTAGGTCG
GCCACCAGCTTCATCAGAGACTCGCCGGCACGGACCATGTTGGCCGCGCG
GACCTGCATTTCCAGGGCATCCTGTTCGCACTGCGTGGTCTTCGAAATCT
GGCTGTGGCTCTCACGGCGCGCCAGCTTGAGTATTTCTTCAAAATTCTCC
AGCATGCTGCGAACGTCGTCCTTGAGGCGCGCATTATAGGACTTCAGAAG
CGCCTCCTTCGACTGGGGCAAAATGGTTGTCCTGGATCCGCTGGCCATGT
CGACTGATAACT
BS11735.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3034-PA | 432 | MED22-RA | 1..432 | 448..17 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 602 | CG3034-RA | 78..509 | 448..17 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 928549..928767 | 235..17 | 1095 | 100 | Minus |
X | 23542271 | X | 928216..928327 | 448..337 | 560 | 100 | Minus |
X | 23542271 | X | 928382..928485 | 338..235 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:01:01 has no hits.
BS11735.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:08 Download gff for
BS11735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3034-PA | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:32 Download gff for
BS11735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..513 | 12..458 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:16 Download gff for
BS11735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..513 | 12..458 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:16 Download gff for
BS11735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 928207..928327 | 337..458 | 96 | -> | Minus |
X | 928384..928485 | 235..336 | 100 | -> | Minus |
X | 928550..928771 | 12..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:32 Download gff for
BS11735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 822240..822360 | 337..458 | 96 | -> | Minus |
arm_X | 822417..822518 | 235..336 | 100 | -> | Minus |
arm_X | 822583..822804 | 12..234 | 99 | | Minus |
BS11735.5prime Sequence
462 bp (462 high quality bases) assembled on 2006-06-16
> BS11735.5prime
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGTAGAA
GCTTTCTAGACC
BS11735.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3034-PA | 432 | MED22-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 602 | CG3034-RA | 78..509 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 928549..928767 | 230..448 | 1095 | 100 | Plus |
X | 23542271 | X | 928216..928327 | 17..128 | 560 | 100 | Plus |
X | 23542271 | X | 928382..928485 | 127..230 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:02:52 has no hits.
BS11735.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:08 Download gff for
BS11735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3034-PA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:41 Download gff for
BS11735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..513 | 7..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:32 Download gff for
BS11735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 69..513 | 7..453 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:32 Download gff for
BS11735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 928207..928327 | 7..128 | 96 | -> | Plus |
X | 928384..928485 | 129..230 | 100 | -> | Plus |
X | 928550..928771 | 231..453 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:41 Download gff for
BS11735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 822240..822360 | 7..128 | 96 | -> | Plus |
arm_X | 822417..822518 | 129..230 | 100 | -> | Plus |
arm_X | 822583..822804 | 231..453 | 99 | | Plus |
BS11735.complete Sequence
464 bp assembled on 2006-11-01
GenBank Submission: FJ636948
> BS11735.complete
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGTAGAA
GCTTTCTAGACCAT
BS11735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 432 | CG3034-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-RA | 602 | CG3034-RA | 78..509 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 928549..928767 | 230..448 | 1095 | 100 | Plus |
X | 23542271 | X | 928216..928327 | 17..128 | 560 | 100 | Plus |
X | 23542271 | X | 928382..928485 | 127..230 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:13:02 has no hits.
BS11735.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:34 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:29 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 71..515 | 7..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:37 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 78..509 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:34 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 71..515 | 7..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:57 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED22-RA | 78..509 | 17..448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:57 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 928216..928327 | 17..128 | 100 | -> | Plus |
X | 928384..928485 | 129..230 | 100 | -> | Plus |
X | 928550..928767 | 231..448 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:37 Download gff for
BS11735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 822249..822360 | 17..128 | 100 | -> | Plus |
arm_X | 822417..822518 | 129..230 | 100 | -> | Plus |
arm_X | 822583..822800 | 231..448 | 100 | | Plus |
BS11735.pep Sequence
Translation from 16 to 447
> BS11735.pep
MASGSRTTILPQSKEALLKSYNARLKDDVRSMLENFEEILKLARRESHSQ
ISKTTQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEA
ITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTSIFK*
BS11735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED22-PA | 143 | CG3034-PA | 1..143 | 1..143 | 711 | 100 | Plus |
CG32971-PC | 145 | CG32971-PC | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PB | 145 | CG32971-PB | 7..130 | 15..138 | 277 | 46.8 | Plus |
CG32971-PA | 145 | CG32971-PA | 7..130 | 15..138 | 277 | 46.8 | Plus |