Clone BS11735 Report

Search the DGRC for BS11735

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptMED22-RA
Protein status:BS11735.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11735.3prime Sequence

462 bp (462 high quality bases) assembled on 2006-06-16

> BS11735.3prime
ATGGTCTAGAAAGCTTCTACTTAAAAATGCTGGTGTAGTACTCCTCCTCC
AGGTCGTACAAGTCCATGGCCATTTCGTCCCTAAGTTTCATCAGCTTCTT
GTCGCACTCGCTCTGTGTGTTCCTGAACAGCTGCGAATTGTTTGTGATGG
CCTCGTTGACCGAGTGAAAGTCGTTGAGGATTAGGTACTGTTTTAGGTCG
GCCACCAGCTTCATCAGAGACTCGCCGGCACGGACCATGTTGGCCGCGCG
GACCTGCATTTCCAGGGCATCCTGTTCGCACTGCGTGGTCTTCGAAATCT
GGCTGTGGCTCTCACGGCGCGCCAGCTTGAGTATTTCTTCAAAATTCTCC
AGCATGCTGCGAACGTCGTCCTTGAGGCGCGCATTATAGGACTTCAGAAG
CGCCTCCTTCGACTGGGGCAAAATGGTTGTCCTGGATCCGCTGGCCATGT
CGACTGATAACT

BS11735.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3034-PA 432 MED22-RA 1..432 448..17 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 602 CG3034-RA 78..509 448..17 2160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928549..928767 235..17 1095 100 Minus
X 23542271 X 928216..928327 448..337 560 100 Minus
X 23542271 X 928382..928485 338..235 520 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:01:01 has no hits.

BS11735.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:08 Download gff for BS11735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3034-PA 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:32 Download gff for BS11735.3prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..513 12..458 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:16 Download gff for BS11735.3prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..513 12..458 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:16 Download gff for BS11735.3prime
Subject Subject Range Query Range Percent Splice Strand
X 928207..928327 337..458 96 -> Minus
X 928384..928485 235..336 100 -> Minus
X 928550..928771 12..234 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:32 Download gff for BS11735.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 822240..822360 337..458 96 -> Minus
arm_X 822417..822518 235..336 100 -> Minus
arm_X 822583..822804 12..234 99   Minus

BS11735.5prime Sequence

462 bp (462 high quality bases) assembled on 2006-06-16

> BS11735.5prime
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGTAGAA
GCTTTCTAGACC

BS11735.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3034-PA 432 MED22-RA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 602 CG3034-RA 78..509 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928549..928767 230..448 1095 100 Plus
X 23542271 X 928216..928327 17..128 560 100 Plus
X 23542271 X 928382..928485 127..230 520 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:02:52 has no hits.

BS11735.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:08 Download gff for BS11735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3034-PA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:41 Download gff for BS11735.5prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..513 7..453 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:32 Download gff for BS11735.5prime
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 69..513 7..453 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:32 Download gff for BS11735.5prime
Subject Subject Range Query Range Percent Splice Strand
X 928207..928327 7..128 96 -> Plus
X 928384..928485 129..230 100 -> Plus
X 928550..928771 231..453 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:41 Download gff for BS11735.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 822240..822360 7..128 96 -> Plus
arm_X 822417..822518 129..230 100 -> Plus
arm_X 822583..822804 231..453 99   Plus

BS11735.complete Sequence

464 bp assembled on 2006-11-01

GenBank Submission: FJ636948

> BS11735.complete
GAAGTTATCAGTCGACATGGCCAGCGGATCCAGGACAACCATTTTGCCCC
AGTCGAAGGAGGCGCTTCTGAAGTCCTATAATGCGCGCCTCAAGGACGAC
GTTCGCAGCATGCTGGAGAATTTTGAAGAAATACTCAAGCTGGCGCGCCG
TGAGAGCCACAGCCAGATTTCGAAGACCACGCAGTGCGAACAGGATGCCC
TGGAAATGCAGGTCCGCGCGGCCAACATGGTCCGTGCCGGCGAGTCTCTG
ATGAAGCTGGTGGCCGACCTAAAACAGTACCTAATCCTCAACGACTTTCA
CTCGGTCAACGAGGCCATCACAAACAATTCGCAGCTGTTCAGGAACACAC
AGAGCGAGTGCGACAAGAAGCTGATGAAACTTAGGGACGAAATGGCCATG
GACTTGTACGACCTGGAGGAGGAGTACTACACCAGCATTTTTAAGTAGAA
GCTTTCTAGACCAT

BS11735.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 432 CG3034-PA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-RA 602 CG3034-RA 78..509 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 928549..928767 230..448 1095 100 Plus
X 23542271 X 928216..928327 17..128 560 100 Plus
X 23542271 X 928382..928485 127..230 520 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:13:02 has no hits.

BS11735.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:34 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:29 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 71..515 7..453 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:37 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 78..509 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:34 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 71..515 7..453 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:57 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
MED22-RA 78..509 17..448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:57 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
X 928216..928327 17..128 100 -> Plus
X 928384..928485 129..230 100 -> Plus
X 928550..928767 231..448 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:37 Download gff for BS11735.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 822249..822360 17..128 100 -> Plus
arm_X 822417..822518 129..230 100 -> Plus
arm_X 822583..822800 231..448 100   Plus

BS11735.pep Sequence

Translation from 16 to 447

> BS11735.pep
MASGSRTTILPQSKEALLKSYNARLKDDVRSMLENFEEILKLARRESHSQ
ISKTTQCEQDALEMQVRAANMVRAGESLMKLVADLKQYLILNDFHSVNEA
ITNNSQLFRNTQSECDKKLMKLRDEMAMDLYDLEEEYYTSIFK*

BS11735.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED22-PA 143 CG3034-PA 1..143 1..143 711 100 Plus
CG32971-PC 145 CG32971-PC 7..130 15..138 277 46.8 Plus
CG32971-PB 145 CG32971-PB 7..130 15..138 277 46.8 Plus
CG32971-PA 145 CG32971-PA 7..130 15..138 277 46.8 Plus