BS11738.complete Sequence
2666 bp assembled on 2007-12-11
GenBank Submission: KX801386
> BS11738.complete
GAAGTTATCAGTCGACATGTCGGGCGGACGTGATAGCAGTACCAGTAGCG
GGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCA
TCCGCATCCGCCTCCTCCACATCCACATCCGCATCCCCTGGAAGTACAAC
ATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCA
CATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCC
ACGCAGACCGGCAAGAAGGAGTTCTGCTCGGAAACATGCATTGCCGAGTT
CCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCC
GCGATGGGGCGCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAG
CACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGCGGATCGGCATCGGG
CAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCG
CACCAACGGGGCCCTTTCAATACGAGAGCTTCCACGTCTTCGACTGGGAT
GCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAA
ACAGGCTCAGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGG
AGGCTTTGGATCCGCGCAACGTCACTTCCACCTGCATTGCCACCGTGGTC
GGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCA
GAATGACTTTTGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGAC
ACTGTGAAAAGAACGGTGGCATGCTGCAGCCGCCTCTGGGATTCCGCATG
AACGCATCCAGCTGGCCCGGCTATCTGTGCAAGATCCTCAACAATGCCAT
GGTGGCGCCAGAAGAGATCTTCCAGCCAGAGCCGCCAGAGCCAGAAGAAA
ACCTGTTCAAGGTGGGCCAGAAACTCGAGGCTGTCGACAAGAAGAACCCG
CAGCTCATCTGCTGTGCAACAGTAGATGCAATCAAGGATGATCAGATCCA
TGTAACATTCGATGGTTGGCGAGGGGCATTCGACTACTGGTGCAATTACC
GATCGCGTGACATTTTTCCCGCCGGCTGGTGCGCTAGAAGTTGTCATCCC
ATGCAGCCACCGGGCCATAAATCGCGCATGGACTCCAGCTCTAGCAAACA
GCGATGCCCTCGACCCCGCTACACTGTTGTAGCTGAGTCCGAGGCTATGG
TTCCCGCTTCCCCTGCCACAGCCCACTTCCATCCGAACTGCAAGGGCGGT
CCGTTCATCAACAATTCCAAACTGCCCTGCATGGTGACGGGACCCACCTA
CCAAACGCTGGCCAAGCTTTGCCTGCAGGAGGTTTTAGCTGCCAGCACGG
ATACGCAACAGCTCTCAAAGTTGCTGTTTGCCCTGGAAGGAGATGTTCAT
ATCGTGACGGCAGCGGGGAAAAATTTCACAGTAAAAATACCATCGCCAAT
GCGAATGAAGGATGACGAAAGCCTCGCCCAATTCATCGAAACGCTGTGCA
CTACATGCCGGGCATGTGCGAATCTCATTTCCTTGGTCCACGAGACGGAG
GAGTGCAAGAAGTGCGCCAATAGTCGGAAGCGTCAACTGACTCAGTCAGC
CACACCGCCTTCCTCGCCAGTGCTCGCCGACAAGCGAAACCGTCAATCCA
ACTCGGCAACGACATCACCCTCTGAGAAGATTATCAAGCAGGAATTGGCT
GTCAAATCGCCAGTGGAGTCCAAGTCGAAAACTTCGACGAACAATGGCAA
GGAGCCTGCAAGCCAGCAAAACAGCAATCACAGTCTCAACAATAACAACA
ACAGTGCCAGCAAGTCCAGCAACAAGGTGGTCATCAAATCGGAGCCCAAC
GGAGCGAACGCGCAGACTTCCTCCACAACGCAGGCTCTGCGCAAAGTACG
CTTCCAACACCACGCAAACACGAATACGAATAGCTCTGCGACAAACGGAA
ACCAGGATACGAGCCAGACCACGCACGTATCTACCAGCCATTGCAGCAGC
TCGTCAACGTCGTCCAGCACGAGCCTAGCCGGAGGATCGGCGAACACCAG
CACAATTGGCAAATACCTGGCACCTCTTGTGGCAGAAGTTCATCCAGAGC
AGGCCAATGTAAAGCCCTCGAATAGCTACTACAAGAGTCCGACGACGCTC
TCGTCAAGCGCCTCGTTGCCGACATCCGTGTCCACGCCGTTCACGGGCTG
CCAGTCAGCCTCGTCCACTGCACTGGCTGCAGGTGGAGTTACAGCGGCTA
AGGCGGCCACCGCGCCGGCTGGAGCAGCGGCAACTGCGGGAGCTTCTCCG
AGCTACACCGCGATTACCTCACCCGTGAGCACGCCCACTTCTGCTTTGGC
AAACTCACATCTGCGGTCGCAGCCGATCGACTGGACCATCGAAGAGGTGA
TCCAGTACATCGAGAGCAACGACAACTCCCTTGCAGTTCATGGTGATCTC
TTCCGAAAGCACGAAATCGATGGTAAAGCTTTATTATTGCTAAATTCAGA
GATGATGATGAAGTACATGGGCCTGAAGCTAGGACCAGCCTTAAAAATCT
GCAATTTAGTCAATAAGGTCAATGGTCGTCGAAATAATCTGGCACTCTAA
AAGCTTTCTAGACCAT
BS11738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scm-RB | 2634 | CG9495-PB | 1..2634 | 17..2650 | 13170 | 100 | Plus |
| Scm-RA | 2634 | CG9495-PA | 1..2634 | 17..2650 | 13170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scm-RB | 3767 | CG9495-RB | 456..3091 | 16..2651 | 13180 | 100 | Plus |
| Scm-RA | 4069 | CG9495-RA | 456..3091 | 16..2651 | 13180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9634536..9635568 | 2513..1481 | 5165 | 100 | Minus |
| 3R | 32079331 | 3R | 9635632..9636553 | 1482..561 | 4610 | 100 | Minus |
| 3R | 32079331 | 3R | 9636609..9637156 | 563..16 | 2740 | 100 | Minus |
| 3R | 32079331 | 3R | 9634337..9634475 | 2651..2513 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2902..2984 | 1790..1875 | 143 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2267..2381 | 1778..1887 | 139 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2423 | 1780..1875 | 126 | 66 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..548 | 1811..1875 | 118 | 64.6 | Plus |
BS11738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:21 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 1..2634 | 17..2650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:10 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 452..3087 | 16..2651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:14 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 453..3084 | 17..2648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:48 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 453..3084 | 17..2648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:26 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 457..3088 | 17..2648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:26 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9634340..9634475 | 2513..2648 | 100 | <- | Minus |
| 3R | 9634537..9635568 | 1481..2512 | 100 | <- | Minus |
| 3R | 9635634..9636551 | 563..1480 | 100 | <- | Minus |
| 3R | 9636610..9637155 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:14 Download gff for
BS11738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5461356..5462273 | 563..1480 | 100 | <- | Minus |
| arm_3R | 5460062..5460197 | 2513..2648 | 100 | <- | Minus |
| arm_3R | 5460259..5461290 | 1481..2512 | 100 | <- | Minus |
| arm_3R | 5462332..5462877 | 17..562 | 100 | | Minus |
BS11738.pep Sequence
Translation from 16 to 2649
> BS11738.pep
MSGGRDSSTSSGSNSAAPGASTNATSSASASASSTSTSASPGSTTSPAST
QRQRGRPAKRATCTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYS
KGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSGGSASGKGLAE
SERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQAQNP
PNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWR
LVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEE
IFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDG
WRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRP
RYTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLAK
LCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMKDD
ESLAQFIETLCTTCRACANLISLVHETEECKKCANSRKRQLTQSATPPSS
PVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTSTNNGKEPASQ
QNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQHHA
NTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKY
LAPLVAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASS
TALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSHLR
SQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKY
MGLKLGPALKICNLVNKVNGRRNNLAL*
BS11738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scm-PB | 877 | CG9495-PB | 1..877 | 1..877 | 4588 | 100 | Plus |
| Scm-PA | 877 | CG9495-PA | 1..877 | 1..877 | 4588 | 100 | Plus |
| l(3)mbt-PB | 1477 | CG5954-PB | 747..1031 | 120..385 | 338 | 31.5 | Plus |
| l(3)mbt-PB | 1477 | CG5954-PB | 926..1133 | 175..384 | 315 | 35.2 | Plus |
| Sfmbt-PA | 868 | CG16975-PA | 444..639 | 203..401 | 277 | 33.3 | Plus |
| Sfmbt-PD | 1220 | CG16975-PD | 796..991 | 203..401 | 277 | 33.3 | Plus |
| Sfmbt-PA | 868 | CG16975-PA | 178..401 | 169..382 | 213 | 28.1 | Plus |
| Sfmbt-PA | 868 | CG16975-PA | 304..525 | 176..387 | 188 | 29.5 | Plus |
