Clone BS11740 Report

Search the DGRC for BS11740

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptArf51F-RA
Protein status:BS11740.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11740.3prime Sequence

558 bp (558 high quality bases) assembled on 2006-06-16

> BS11740.3prime
ATGGTCTAGAAAGCTTTCATAACTTATGGTTCGACGTTAACCAAATGAGG
CCCTCGGACAGGCCATCGCCGGATGTGGCACATGATGGTTGTACATACCA
ATTGCGATCTCTTATTCTAGTTAAACCTAGTTTTTCCTGGATTTCATGGG
GTTTCATTGCATCAGGCAGATCCTGCTTGTTAGCAAATATCAGTATGATG
GCGTCGCGCATCTCCCTATCGTTAATTATCCTATGCAGCTCCGTGCGCGC
CTCGTCTATCCGATCCCGATCCGCACAATCCACGACGAAGATCAGACCCT
GTGTACCCGTGTAATAGTGTCGCCATAGCGGTCGAATCTTATCCTGCCCA
CCGACGTCCCACACATTGAACTTGACATTCTTATAGGTGACGGTTTCCAC
ATTAAAGCCCACAGTGGGTATCGTTGTAACAGATTGGCCAAGTTTCAGTT
TGTACAGAATCGTTGTTTTTCCAGCCGCGTCCAGTCCGAGCATGAGAATT
CGCATTTCCTTGTTGCCGAAAATTTTTGATAGTAACTTTCCCATGTCGAC
TGATAACT

BS11740.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8156-PD 528 Arf51F-RD 1..528 544..17 2640 100 Minus
CG8156-PB 528 Arf51F-RB 1..528 544..17 2640 100 Minus
CG8156-PC 528 Arf51F-RC 1..528 544..17 2640 100 Minus
CG8156-PA 528 Arf51F-RA 1..528 544..17 2640 100 Minus
CG8156-PE 528 Arf51F-RE 1..528 544..17 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Arf51F-RE 1357 CG8156-RE 281..809 545..17 2645 100 Minus
Arf51F-RA 1352 CG8156-RA 276..804 545..17 2645 100 Minus
Arf51F-RC 1370 CG8156-RC 294..822 545..17 2645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15323841..15324147 466..160 1520 99.7 Minus
2R 25286936 2R 15324201..15324344 160..17 720 100 Minus
2R 25286936 2R 15323483..15323565 545..463 415 100 Minus
3L 28110227 3L 22869850..22869953 417..520 220 80.8 Plus
4 1348131 4 1124442..1124648 483..277 210 73.4 Minus
Blast to na_te.dros performed on 2015-02-10 17:20:22 has no hits.

BS11740.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:09 Download gff for BS11740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8156-PE 1..528 17..544 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:59 Download gff for BS11740.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 286..822 17..554 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:51 Download gff for BS11740.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 286..822 17..554 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:51 Download gff for BS11740.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15323475..15323565 463..554 96 -> Minus
2R 15323845..15324147 160..462 100 -> Minus
2R 15324202..15324344 17..159 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:59 Download gff for BS11740.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11210980..11211070 463..554 96 -> Minus
arm_2R 11211350..11211652 160..462 100 -> Minus
arm_2R 11211707..11211849 17..159 100   Minus

BS11740.5prime Sequence

558 bp (558 high quality bases) assembled on 2006-06-16

> BS11740.5prime
GAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACA
AGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACG
ATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGT
GGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGT
GGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTAC
ACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCG
GATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGA
TGCGCGACGCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGAT
GCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAG
AGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCC
TGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTATGAAAGCTT
TCTAGACC

BS11740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8156-PD 528 Arf51F-RD 1..528 17..544 2640 100 Plus
CG8156-PB 528 Arf51F-RB 1..528 17..544 2640 100 Plus
CG8156-PC 528 Arf51F-RC 1..528 17..544 2640 100 Plus
CG8156-PA 528 Arf51F-RA 1..528 17..544 2640 100 Plus
CG8156-PE 528 Arf51F-RE 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Arf51F-RE 1357 CG8156-RE 281..809 16..544 2645 100 Plus
Arf51F-RA 1352 CG8156-RA 276..804 16..544 2645 100 Plus
Arf51F-RC 1370 CG8156-RC 294..822 16..544 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15323841..15324147 95..401 1520 99.7 Plus
2R 25286936 2R 15324201..15324344 401..544 720 100 Plus
2R 25286936 2R 15323483..15323565 16..98 415 100 Plus
3L 28110227 3L 22869850..22869953 144..41 220 80.8 Minus
4 1348131 4 1124442..1124648 78..284 210 73.4 Plus
Blast to na_te.dros performed on 2015-02-12 17:54:43 has no hits.

BS11740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:09 Download gff for BS11740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8156-PE 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:50 Download gff for BS11740.5prime
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 286..822 7..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:07 Download gff for BS11740.5prime
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 286..822 7..544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:07 Download gff for BS11740.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15324202..15324344 402..544 100   Plus
2R 15323845..15324147 99..401 100 -> Plus
2R 15323475..15323565 7..98 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:50 Download gff for BS11740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11210980..11211070 7..98 96 -> Plus
arm_2R 11211350..11211652 99..401 100 -> Plus
arm_2R 11211707..11211849 402..544 100   Plus

BS11740.complete Sequence

560 bp assembled on 2006-11-01

GenBank Submission: FJ636950

> BS11740.complete
GAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACA
AGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACG
ATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGT
GGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGT
GGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTAC
ACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCG
GATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGA
TGCGCGACGCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGAT
GCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAG
AGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCC
TGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTATGAAAGCTT
TCTAGACCAT

BS11740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
Arf51F-RE 528 CG8156-PE 1..528 17..544 2640 100 Plus
Arf51F-RA 528 CG8156-PA 1..528 17..544 2640 100 Plus
Arf51F-RC 528 CG8156-PC 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Arf51F-RE 1357 CG8156-RE 281..809 16..544 2645 100 Plus
Arf51F-RA 1352 CG8156-RA 276..804 16..544 2645 100 Plus
Arf51F-RC 1370 CG8156-RC 294..822 16..544 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15323841..15324147 95..401 1520 99.7 Plus
2R 25286936 2R 15324201..15324344 401..544 720 100 Plus
2R 25286936 2R 15323483..15323565 16..98 415 100 Plus
3L 28110227 3L 22869850..22869953 144..41 220 80.8 Minus
4 1348131 4 1124442..1124648 78..284 210 73.4 Plus
Blast to na_te.dros performed on 2014-11-28 00:00:28 has no hits.

BS11740.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:20 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:10 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RD 284..820 7..544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:15:54 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 295..821 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:20 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RD 284..820 7..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:32 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
Arf51F-RC 295..821 17..543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:32 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15323484..15323565 17..98 100 -> Plus
2R 15323845..15324147 99..401 100 -> Plus
2R 15324202..15324343 402..543 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:15:54 Download gff for BS11740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11210989..11211070 17..98 100 -> Plus
arm_2R 11211350..11211652 99..401 100 -> Plus
arm_2R 11211707..11211848 402..543 100   Plus

BS11740.pep Sequence

Translation from 16 to 543

> BS11740.pep
MGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE
TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR
TELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY
VQPSCATSGDGLSEGLIWLTSNHKL*

BS11740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Arf51F-PE 175 CG8156-PE 1..175 1..175 921 100 Plus
Arf51F-PA 175 CG8156-PA 1..175 1..175 921 100 Plus
Arf51F-PC 175 CG8156-PC 1..175 1..175 921 100 Plus
Arf51F-PB 175 CG8156-PB 1..175 1..175 921 100 Plus
Arf51F-PD 175 CG8156-PD 1..175 1..175 921 100 Plus