Clone Sequence Records
BS11740.3prime Sequence
558 bp (558 high quality bases) assembled on 2006-06-16
> BS11740.3prime
ATGGTCTAGAAAGCTTTCATAACTTATGGTTCGACGTTAACCAAATGAGG
CCCTCGGACAGGCCATCGCCGGATGTGGCACATGATGGTTGTACATACCA
ATTGCGATCTCTTATTCTAGTTAAACCTAGTTTTTCCTGGATTTCATGGG
GTTTCATTGCATCAGGCAGATCCTGCTTGTTAGCAAATATCAGTATGATG
GCGTCGCGCATCTCCCTATCGTTAATTATCCTATGCAGCTCCGTGCGCGC
CTCGTCTATCCGATCCCGATCCGCACAATCCACGACGAAGATCAGACCCT
GTGTACCCGTGTAATAGTGTCGCCATAGCGGTCGAATCTTATCCTGCCCA
CCGACGTCCCACACATTGAACTTGACATTCTTATAGGTGACGGTTTCCAC
ATTAAAGCCCACAGTGGGTATCGTTGTAACAGATTGGCCAAGTTTCAGTT
TGTACAGAATCGTTGTTTTTCCAGCCGCGTCCAGTCCGAGCATGAGAATT
CGCATTTCCTTGTTGCCGAAAATTTTTGATAGTAACTTTCCCATGTCGAC
TGATAACT
BS11740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8156-PD | 528 | Arf51F-RD | 1..528 | 544..17 | 2640 | 100 | Minus |
CG8156-PB | 528 | Arf51F-RB | 1..528 | 544..17 | 2640 | 100 | Minus |
CG8156-PC | 528 | Arf51F-RC | 1..528 | 544..17 | 2640 | 100 | Minus |
CG8156-PA | 528 | Arf51F-RA | 1..528 | 544..17 | 2640 | 100 | Minus |
CG8156-PE | 528 | Arf51F-RE | 1..528 | 544..17 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf51F-RE | 1357 | CG8156-RE | 281..809 | 545..17 | 2645 | 100 | Minus |
Arf51F-RA | 1352 | CG8156-RA | 276..804 | 545..17 | 2645 | 100 | Minus |
Arf51F-RC | 1370 | CG8156-RC | 294..822 | 545..17 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15323841..15324147 | 466..160 | 1520 | 99.7 | Minus |
2R | 25286936 | 2R | 15324201..15324344 | 160..17 | 720 | 100 | Minus |
2R | 25286936 | 2R | 15323483..15323565 | 545..463 | 415 | 100 | Minus |
3L | 28110227 | 3L | 22869850..22869953 | 417..520 | 220 | 80.8 | Plus |
4 | 1348131 | 4 | 1124442..1124648 | 483..277 | 210 | 73.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:20:22 has no hits.
BS11740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:09 Download gff for
BS11740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8156-PE | 1..528 | 17..544 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:59 Download gff for
BS11740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 286..822 | 17..554 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:51 Download gff for
BS11740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 286..822 | 17..554 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:51 Download gff for
BS11740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15323475..15323565 | 463..554 | 96 | -> | Minus |
2R | 15323845..15324147 | 160..462 | 100 | -> | Minus |
2R | 15324202..15324344 | 17..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:59 Download gff for
BS11740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11210980..11211070 | 463..554 | 96 | -> | Minus |
arm_2R | 11211350..11211652 | 160..462 | 100 | -> | Minus |
arm_2R | 11211707..11211849 | 17..159 | 100 | | Minus |
BS11740.5prime Sequence
558 bp (558 high quality bases) assembled on 2006-06-16
> BS11740.5prime
GAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACA
AGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACG
ATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGT
GGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGT
GGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTAC
ACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCG
GATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGA
TGCGCGACGCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGAT
GCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAG
AGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCC
TGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTATGAAAGCTT
TCTAGACC
BS11740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8156-PD | 528 | Arf51F-RD | 1..528 | 17..544 | 2640 | 100 | Plus |
CG8156-PB | 528 | Arf51F-RB | 1..528 | 17..544 | 2640 | 100 | Plus |
CG8156-PC | 528 | Arf51F-RC | 1..528 | 17..544 | 2640 | 100 | Plus |
CG8156-PA | 528 | Arf51F-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
CG8156-PE | 528 | Arf51F-RE | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf51F-RE | 1357 | CG8156-RE | 281..809 | 16..544 | 2645 | 100 | Plus |
Arf51F-RA | 1352 | CG8156-RA | 276..804 | 16..544 | 2645 | 100 | Plus |
Arf51F-RC | 1370 | CG8156-RC | 294..822 | 16..544 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15323841..15324147 | 95..401 | 1520 | 99.7 | Plus |
2R | 25286936 | 2R | 15324201..15324344 | 401..544 | 720 | 100 | Plus |
2R | 25286936 | 2R | 15323483..15323565 | 16..98 | 415 | 100 | Plus |
3L | 28110227 | 3L | 22869850..22869953 | 144..41 | 220 | 80.8 | Minus |
4 | 1348131 | 4 | 1124442..1124648 | 78..284 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:54:43 has no hits.
BS11740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:09 Download gff for
BS11740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8156-PE | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:50 Download gff for
BS11740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 286..822 | 7..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:07 Download gff for
BS11740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 286..822 | 7..544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:07 Download gff for
BS11740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15324202..15324344 | 402..544 | 100 | | Plus |
2R | 15323845..15324147 | 99..401 | 100 | -> | Plus |
2R | 15323475..15323565 | 7..98 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:50 Download gff for
BS11740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11210980..11211070 | 7..98 | 96 | -> | Plus |
arm_2R | 11211350..11211652 | 99..401 | 100 | -> | Plus |
arm_2R | 11211707..11211849 | 402..544 | 100 | | Plus |
BS11740.complete Sequence
560 bp assembled on 2006-11-01
GenBank Submission: FJ636950
> BS11740.complete
GAAGTTATCAGTCGACATGGGAAAGTTACTATCAAAAATTTTCGGCAACA
AGGAAATGCGAATTCTCATGCTCGGACTGGACGCGGCTGGAAAAACAACG
ATTCTGTACAAACTGAAACTTGGCCAATCTGTTACAACGATACCCACTGT
GGGCTTTAATGTGGAAACCGTCACCTATAAGAATGTCAAGTTCAATGTGT
GGGACGTCGGTGGGCAGGATAAGATTCGACCGCTATGGCGACACTATTAC
ACGGGTACACAGGGTCTGATCTTCGTCGTGGATTGTGCGGATCGGGATCG
GATAGACGAGGCGCGCACGGAGCTGCATAGGATAATTAACGATAGGGAGA
TGCGCGACGCCATCATACTGATATTTGCTAACAAGCAGGATCTGCCTGAT
GCAATGAAACCCCATGAAATCCAGGAAAAACTAGGTTTAACTAGAATAAG
AGATCGCAATTGGTATGTACAACCATCATGTGCCACATCCGGCGATGGCC
TGTCCGAGGGCCTCATTTGGTTAACGTCGAACCATAAGTTATGAAAGCTT
TCTAGACCAT
BS11740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf51F-RE | 528 | CG8156-PE | 1..528 | 17..544 | 2640 | 100 | Plus |
Arf51F-RA | 528 | CG8156-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Arf51F-RC | 528 | CG8156-PC | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf51F-RE | 1357 | CG8156-RE | 281..809 | 16..544 | 2645 | 100 | Plus |
Arf51F-RA | 1352 | CG8156-RA | 276..804 | 16..544 | 2645 | 100 | Plus |
Arf51F-RC | 1370 | CG8156-RC | 294..822 | 16..544 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15323841..15324147 | 95..401 | 1520 | 99.7 | Plus |
2R | 25286936 | 2R | 15324201..15324344 | 401..544 | 720 | 100 | Plus |
2R | 25286936 | 2R | 15323483..15323565 | 16..98 | 415 | 100 | Plus |
3L | 28110227 | 3L | 22869850..22869953 | 144..41 | 220 | 80.8 | Minus |
4 | 1348131 | 4 | 1124442..1124648 | 78..284 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:00:28 has no hits.
BS11740.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:20 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:10 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RD | 284..820 | 7..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:15:54 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 295..821 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:20 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RD | 284..820 | 7..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:32 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf51F-RC | 295..821 | 17..543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:32 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15323484..15323565 | 17..98 | 100 | -> | Plus |
2R | 15323845..15324147 | 99..401 | 100 | -> | Plus |
2R | 15324202..15324343 | 402..543 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:15:54 Download gff for
BS11740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11210989..11211070 | 17..98 | 100 | -> | Plus |
arm_2R | 11211350..11211652 | 99..401 | 100 | -> | Plus |
arm_2R | 11211707..11211848 | 402..543 | 100 | | Plus |
BS11740.pep Sequence
Translation from 16 to 543
> BS11740.pep
MGKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE
TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR
TELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY
VQPSCATSGDGLSEGLIWLTSNHKL*
BS11740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf51F-PE | 175 | CG8156-PE | 1..175 | 1..175 | 921 | 100 | Plus |
Arf51F-PA | 175 | CG8156-PA | 1..175 | 1..175 | 921 | 100 | Plus |
Arf51F-PC | 175 | CG8156-PC | 1..175 | 1..175 | 921 | 100 | Plus |
Arf51F-PB | 175 | CG8156-PB | 1..175 | 1..175 | 921 | 100 | Plus |
Arf51F-PD | 175 | CG8156-PD | 1..175 | 1..175 | 921 | 100 | Plus |