Clone Sequence Records
BS11742.3prime Sequence
432 bp (432 high quality bases) assembled on 2006-06-16
> BS11742.3prime
ATGGTCTAGAAAGCTTTCAGCAGCCGTAATCCTCGTCGTCGTCGCTATCG
ATGGCCGCCCGCCGCCGATCGTATTTCACGGAGGACTTGCTCTGCGGCAT
CTGAGCATTGACGCTTTCGAGGATGCTGACGAACTGGGCGTCATCAAGTT
TTCCACGCACCTGACCCATCTGGGCCATGCGGATGACCATGTTCTCGAAC
ATTTGCGCCTTCTCCGGCTTGCTGACTTTGAGGGTATTAAGTCGTGCCCT
GGCCTGCTGGTCCAGAACTTGGGATAATATCGAGTGCTTCATTTCCTCCT
GGGCGCGCATCTGCTCCTGCTGGGCTTGTTGCTTTTCCGCATCATTGCCG
CCGCCGAATTGCGACTGCATTTGGGACATGCGCTGCGCGCGTAAGGCATC
CAAATCACTATCCGACATGTCGACTGATAACT
BS11742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13072-PA | 402 | PDCD-5-RA | 1..402 | 418..17 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 650 | CG13072-RA | 137..538 | 418..17 | 2010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16231193..16231416 | 17..240 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 16231474..16231588 | 241..355 | 575 | 100 | Plus |
3L | 28110227 | 3L | 16231839..16231902 | 355..418 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:13:50 has no hits.
BS11742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:10 Download gff for
BS11742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13072-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:15 Download gff for
BS11742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..538 | 17..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:44 Download gff for
BS11742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..538 | 17..426 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:44 Download gff for
BS11742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16231193..16231416 | 17..240 | 100 | <- | Plus |
3L | 16231474..16231588 | 241..355 | 100 | <- | Plus |
3L | 16231840..16231906 | 356..426 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:15 Download gff for
BS11742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16224293..16224516 | 17..240 | 100 | <- | Plus |
arm_3L | 16224574..16224688 | 241..355 | 100 | <- | Plus |
arm_3L | 16224940..16225006 | 356..426 | 94 | | Plus |
BS11742.5prime Sequence
432 bp (432 high quality bases) assembled on 2006-06-16
> BS11742.5prime
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCTGAAAGCTTTCTAGACC
BS11742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13072-PA | 402 | PDCD-5-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 650 | CG13072-RA | 137..538 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16231193..16231416 | 418..195 | 1120 | 100 | Minus |
3L | 28110227 | 3L | 16231474..16231588 | 194..80 | 575 | 100 | Minus |
3L | 28110227 | 3L | 16231839..16231902 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:49:18 has no hits.
BS11742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:10 Download gff for
BS11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13072-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:13 Download gff for
BS11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..538 | 9..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:39 Download gff for
BS11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 133..538 | 9..418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:39 Download gff for
BS11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16231193..16231416 | 195..418 | 100 | <- | Minus |
3L | 16231474..16231588 | 80..194 | 100 | <- | Minus |
3L | 16231840..16231906 | 9..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:13 Download gff for
BS11742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16224293..16224516 | 195..418 | 100 | <- | Minus |
arm_3L | 16224574..16224688 | 80..194 | 100 | <- | Minus |
arm_3L | 16224940..16225006 | 9..79 | 94 | | Minus |
BS11742.complete Sequence
434 bp assembled on 2006-11-01
GenBank Submission: FJ636951
> BS11742.complete
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCTGAAAGCTTTCTAGACCAT
BS11742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 402 | CG13072-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-RA | 650 | CG13072-RA | 137..538 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16231193..16231416 | 418..195 | 1120 | 100 | Minus |
3L | 28110227 | 3L | 16231474..16231588 | 194..80 | 575 | 100 | Minus |
3L | 28110227 | 3L | 16231839..16231902 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:37:51 has no hits.
BS11742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:21 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:12 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 127..532 | 9..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:56 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 137..537 | 17..417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:21 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 127..532 | 9..418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:58 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PDCD-5-RA | 137..537 | 17..417 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:58 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16231194..16231416 | 195..417 | 100 | <- | Minus |
3L | 16231474..16231588 | 80..194 | 100 | <- | Minus |
3L | 16231840..16231902 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:56 Download gff for
BS11742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16224574..16224688 | 80..194 | 100 | <- | Minus |
arm_3L | 16224940..16225002 | 17..79 | 100 | | Minus |
arm_3L | 16224294..16224516 | 195..417 | 100 | <- | Minus |
BS11742.pep Sequence
Translation from 16 to 417
> BS11742.pep
MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQ
VLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSIL
ESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGC*
BS11742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PDCD-5-PA | 133 | CG13072-PA | 1..133 | 1..133 | 661 | 100 | Plus |