Clone BS11742 Report

Search the DGRC for BS11742

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptPDCD-5-RA
Protein status:BS11742.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11742.3prime Sequence

432 bp (432 high quality bases) assembled on 2006-06-16

> BS11742.3prime
ATGGTCTAGAAAGCTTTCAGCAGCCGTAATCCTCGTCGTCGTCGCTATCG
ATGGCCGCCCGCCGCCGATCGTATTTCACGGAGGACTTGCTCTGCGGCAT
CTGAGCATTGACGCTTTCGAGGATGCTGACGAACTGGGCGTCATCAAGTT
TTCCACGCACCTGACCCATCTGGGCCATGCGGATGACCATGTTCTCGAAC
ATTTGCGCCTTCTCCGGCTTGCTGACTTTGAGGGTATTAAGTCGTGCCCT
GGCCTGCTGGTCCAGAACTTGGGATAATATCGAGTGCTTCATTTCCTCCT
GGGCGCGCATCTGCTCCTGCTGGGCTTGTTGCTTTTCCGCATCATTGCCG
CCGCCGAATTGCGACTGCATTTGGGACATGCGCTGCGCGCGTAAGGCATC
CAAATCACTATCCGACATGTCGACTGATAACT

BS11742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13072-PA 402 PDCD-5-RA 1..402 418..17 2010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 650 CG13072-RA 137..538 418..17 2010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16231193..16231416 17..240 1120 100 Plus
3L 28110227 3L 16231474..16231588 241..355 575 100 Plus
3L 28110227 3L 16231839..16231902 355..418 320 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:13:50 has no hits.

BS11742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:10 Download gff for BS11742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13072-PA 1..402 17..418 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:15 Download gff for BS11742.3prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..538 17..426 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:44 Download gff for BS11742.3prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..538 17..426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:44 Download gff for BS11742.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16231193..16231416 17..240 100 <- Plus
3L 16231474..16231588 241..355 100 <- Plus
3L 16231840..16231906 356..426 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:15 Download gff for BS11742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16224293..16224516 17..240 100 <- Plus
arm_3L 16224574..16224688 241..355 100 <- Plus
arm_3L 16224940..16225006 356..426 94   Plus

BS11742.5prime Sequence

432 bp (432 high quality bases) assembled on 2006-06-16

> BS11742.5prime
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCTGAAAGCTTTCTAGACC

BS11742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13072-PA 402 PDCD-5-RA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 650 CG13072-RA 137..538 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16231193..16231416 418..195 1120 100 Minus
3L 28110227 3L 16231474..16231588 194..80 575 100 Minus
3L 28110227 3L 16231839..16231902 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:49:18 has no hits.

BS11742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:10 Download gff for BS11742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13072-PA 1..402 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:13 Download gff for BS11742.5prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..538 9..418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:39 Download gff for BS11742.5prime
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 133..538 9..418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:39 Download gff for BS11742.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16231193..16231416 195..418 100 <- Minus
3L 16231474..16231588 80..194 100 <- Minus
3L 16231840..16231906 9..79 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:13 Download gff for BS11742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16224293..16224516 195..418 100 <- Minus
arm_3L 16224574..16224688 80..194 100 <- Minus
arm_3L 16224940..16225006 9..79 94   Minus

BS11742.complete Sequence

434 bp assembled on 2006-11-01

GenBank Submission: FJ636951

> BS11742.complete
GAAGTTATCAGTCGACATGTCGGATAGTGATTTGGATGCCTTACGCGCGC
AGCGCATGTCCCAAATGCAGTCGCAATTCGGCGGCGGCAATGATGCGGAA
AAGCAACAAGCCCAGCAGGAGCAGATGCGCGCCCAGGAGGAAATGAAGCA
CTCGATATTATCCCAAGTTCTGGACCAGCAGGCCAGGGCACGACTTAATA
CCCTCAAAGTCAGCAAGCCGGAGAAGGCGCAAATGTTCGAGAACATGGTC
ATCCGCATGGCCCAGATGGGTCAGGTGCGTGGAAAACTTGATGACGCCCA
GTTCGTCAGCATCCTCGAAAGCGTCAATGCTCAGATGCCGCAGAGCAAGT
CCTCCGTGAAATACGATCGGCGGCGGGCGGCCATCGATAGCGACGACGAC
GAGGATTACGGCTGCTGAAAGCTTTCTAGACCAT

BS11742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 402 CG13072-PA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-RA 650 CG13072-RA 137..538 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16231193..16231416 418..195 1120 100 Minus
3L 28110227 3L 16231474..16231588 194..80 575 100 Minus
3L 28110227 3L 16231839..16231902 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:37:51 has no hits.

BS11742.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:21 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 1..402 17..418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:12 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 127..532 9..418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:56 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 137..537 17..417 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:21 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 127..532 9..418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:58 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
PDCD-5-RA 137..537 17..417 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:58 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16231194..16231416 195..417 100 <- Minus
3L 16231474..16231588 80..194 100 <- Minus
3L 16231840..16231902 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:56 Download gff for BS11742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16224574..16224688 80..194 100 <- Minus
arm_3L 16224940..16225002 17..79 100   Minus
arm_3L 16224294..16224516 195..417 100 <- Minus

BS11742.pep Sequence

Translation from 16 to 417

> BS11742.pep
MSDSDLDALRAQRMSQMQSQFGGGNDAEKQQAQQEQMRAQEEMKHSILSQ
VLDQQARARLNTLKVSKPEKAQMFENMVIRMAQMGQVRGKLDDAQFVSIL
ESVNAQMPQSKSSVKYDRRRAAIDSDDDEDYGC*

BS11742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
PDCD-5-PA 133 CG13072-PA 1..133 1..133 661 100 Plus