Clone Sequence Records
BS11744.3prime Sequence
390 bp (390 high quality bases) assembled on 2006-06-16
> BS11744.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCAGCAGCAGAGGAGCGGCAGCGGTG
GCCACATAGGGAGAGCTGTAGGCCAGGGGCGAGGTGTAGGCGGCGGCGTA
GGGAGCGATGGGAGCGGCATAGGCAGCGGCCACTGGAGCGGTATAGGCGG
CAGCAACGGGAGCGGTGTAGGCGGCGGTGTAGGCAGCTGGGAAGGCTGCG
CTGTGAGCCACCGAGTGGGCGCTGTAGCTGGAGGCATAGGGAGCCACGTA
CGCGGCACTGCCCACCACAGCCGGAGCGGTGTAGGCCAGAGGAGCGGCGG
CCAGAGGAGCCACAAGTCCAGGCTTGGCAGCAGCCACAGCCACAACAGCG
AAGAAGCAGACGGCGATGAATTTCATGTCGACTGATAACT
BS11744.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-PB | 360 | CG13679-RB | 1..360 | 376..17 | 1800 | 100 | Minus |
CG13679-PA | 438 | CG13679-RA | 88..438 | 367..17 | 1755 | 100 | Minus |
CG13678-PA | 387 | CG13678-RA | 21..192 | 356..185 | 685 | 95.9 | Minus |
CG13674-PA | 414 | CG13674-RA | 67..251 | 295..111 | 650 | 94 | Minus |
CG13678-PA | 387 | CG13678-RA | 286..338 | 103..51 | 240 | 98.1 | Minus |
CG13674-PA | 414 | CG13674-RA | 1..53 | 376..324 | 240 | 98.1 | Minus |
CG13678-PA | 387 | CG13678-RA | 342..387 | 62..17 | 155 | 93.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 489 | CG13679-RB | 66..427 | 378..17 | 1810 | 100 | Minus |
CG13674-RB | 559 | CG13674-RB | 65..317 | 378..111 | 865 | 88.4 | Minus |
CG13674-RA | 687 | CG13674-RA | 65..317 | 378..111 | 865 | 88.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8202933..8203283 | 367..17 | 1755 | 100 | Minus |
3L | 28110227 | 3L | 8218602..8218842 | 111..366 | 795 | 88.3 | Plus |
3L | 28110227 | 3L | 8222475..8222792 | 356..51 | 775 | 83.6 | Minus |
3L | 28110227 | 3L | 8218581..8218639 | 114..172 | 190 | 88.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:13:02 has no hits.
BS11744.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:10 Download gff for
BS11744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-PB | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:53 Download gff for
BS11744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..427 | 17..390 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:01 Download gff for
BS11744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..427 | 17..390 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:01 Download gff for
BS11744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8202929..8203283 | 17..371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:53 Download gff for
BS11744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8196029..8196383 | 17..371 | 99 | | Minus |
BS11744.5prime Sequence
390 bp (390 high quality bases) assembled on 2006-06-16
> BS11744.5prime
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGTAAAAGCTTTCTAGACC
BS11744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-PB | 360 | CG13679-RB | 1..360 | 17..376 | 1800 | 100 | Plus |
CG13679-PA | 438 | CG13679-RA | 88..438 | 26..376 | 1755 | 100 | Plus |
CG13678-PA | 387 | CG13678-RA | 21..192 | 37..208 | 685 | 95.9 | Plus |
CG13674-PA | 414 | CG13674-RA | 67..251 | 98..282 | 650 | 94 | Plus |
CG13678-PA | 387 | CG13678-RA | 286..338 | 290..342 | 240 | 98.1 | Plus |
CG13674-PA | 414 | CG13674-RA | 1..53 | 17..69 | 240 | 98.1 | Plus |
CG13678-PA | 387 | CG13678-RA | 342..387 | 331..376 | 155 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 489 | CG13679-RB | 66..427 | 15..376 | 1810 | 100 | Plus |
CG13674-RB | 559 | CG13674-RB | 65..317 | 15..282 | 865 | 88.4 | Plus |
CG13674-RA | 687 | CG13674-RA | 65..317 | 15..282 | 865 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8202933..8203283 | 26..376 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 8218602..8218842 | 282..27 | 795 | 88.3 | Minus |
3L | 28110227 | 3L | 8222475..8222792 | 37..342 | 775 | 83.6 | Plus |
3L | 28110227 | 3L | 8218581..8218639 | 279..221 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:06:49 has no hits.
BS11744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:11 Download gff for
BS11744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-PB | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:02 Download gff for
BS11744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..427 | 2..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:07 Download gff for
BS11744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 54..427 | 2..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:07 Download gff for
BS11744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8202929..8203283 | 22..376 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:02 Download gff for
BS11744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8196029..8196383 | 22..376 | 99 | | Plus |
BS11744.complete Sequence
392 bp assembled on 2007-10-17
GenBank Submission: FJ636952
> BS11744.complete
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGTAAAAGCTTTCTAGACCAT
BS11744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 360 | CG13679-PB | 1..360 | 17..376 | 1800 | 100 | Plus |
CG13674-RB | 414 | CG13674-PB | 1..251 | 17..282 | 830 | 88.3 | Plus |
CG13674-RA | 414 | CG13674-PA | 1..251 | 17..282 | 830 | 88.3 | Plus |
CG13674-RB | 414 | CG13674-PB | 214..272 | 221..279 | 190 | 88.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-RB | 489 | CG13679-RB | 66..427 | 15..376 | 1810 | 100 | Plus |
CG13674-RB | 559 | CG13674-RB | 65..317 | 15..282 | 840 | 88.4 | Plus |
CG13674-RA | 687 | CG13674-RA | 65..317 | 15..282 | 840 | 88.4 | Plus |
CG13674-RB | 559 | CG13674-RB | 280..338 | 221..279 | 190 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8202933..8203283 | 26..376 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 8218602..8218842 | 282..27 | 795 | 88.3 | Minus |
3L | 28110227 | 3L | 8222475..8222792 | 37..342 | 775 | 83.6 | Plus |
3L | 28110227 | 3L | 8218581..8218639 | 279..221 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:07 has no hits.
BS11744.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:22 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:12 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 52..425 | 2..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:49 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 68..425 | 17..374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:18 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 66..423 | 17..374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:07 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13679-RB | 68..425 | 17..374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:07 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8202929..8203281 | 22..374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:49 Download gff for
BS11744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8196029..8196381 | 22..374 | 99 | | Plus |
BS11744.pep Sequence
Translation from 16 to 375
> BS11744.pep
MKFIAVCFFAVVAVAAAKPGLVAPLAAAPLAYTAPAVVGSAAYVAPYASS
YSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAYAAPIAPYAAAYTSP
LAYSSPYVATAAAPLLLKK*
BS11744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13679-PB | 119 | CG13679-PB | 1..119 | 1..119 | 587 | 100 | Plus |
CG13678-PA | 128 | CG13678-PA | 3..128 | 2..119 | 439 | 77.1 | Plus |
CG13674-PB | 137 | CG13674-PB | 1..119 | 1..115 | 426 | 74.2 | Plus |
CG13674-PA | 137 | CG13674-PA | 1..119 | 1..115 | 426 | 74.2 | Plus |
CG13066-PB | 93 | CG13066-PB | 2..90 | 1..74 | 201 | 57.3 | Plus |