Clone BS11744 Report

Search the DGRC for BS11744

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG13679-RB
Protein status:BS11744.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11744.3prime Sequence

390 bp (390 high quality bases) assembled on 2006-06-16

> BS11744.3prime
ATGGTCTAGAAAGCTTTTACTTCTTCAGCAGCAGAGGAGCGGCAGCGGTG
GCCACATAGGGAGAGCTGTAGGCCAGGGGCGAGGTGTAGGCGGCGGCGTA
GGGAGCGATGGGAGCGGCATAGGCAGCGGCCACTGGAGCGGTATAGGCGG
CAGCAACGGGAGCGGTGTAGGCGGCGGTGTAGGCAGCTGGGAAGGCTGCG
CTGTGAGCCACCGAGTGGGCGCTGTAGCTGGAGGCATAGGGAGCCACGTA
CGCGGCACTGCCCACCACAGCCGGAGCGGTGTAGGCCAGAGGAGCGGCGG
CCAGAGGAGCCACAAGTCCAGGCTTGGCAGCAGCCACAGCCACAACAGCG
AAGAAGCAGACGGCGATGAATTTCATGTCGACTGATAACT

BS11744.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-PB 360 CG13679-RB 1..360 376..17 1800 100 Minus
CG13679-PA 438 CG13679-RA 88..438 367..17 1755 100 Minus
CG13678-PA 387 CG13678-RA 21..192 356..185 685 95.9 Minus
CG13674-PA 414 CG13674-RA 67..251 295..111 650 94 Minus
CG13678-PA 387 CG13678-RA 286..338 103..51 240 98.1 Minus
CG13674-PA 414 CG13674-RA 1..53 376..324 240 98.1 Minus
CG13678-PA 387 CG13678-RA 342..387 62..17 155 93.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 489 CG13679-RB 66..427 378..17 1810 100 Minus
CG13674-RB 559 CG13674-RB 65..317 378..111 865 88.4 Minus
CG13674-RA 687 CG13674-RA 65..317 378..111 865 88.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8202933..8203283 367..17 1755 100 Minus
3L 28110227 3L 8218602..8218842 111..366 795 88.3 Plus
3L 28110227 3L 8222475..8222792 356..51 775 83.6 Minus
3L 28110227 3L 8218581..8218639 114..172 190 88.1 Plus
Blast to na_te.dros performed on 2015-02-11 23:13:02 has no hits.

BS11744.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:10 Download gff for BS11744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-PB 1..360 17..376 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:30:53 Download gff for BS11744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..427 17..390 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:01 Download gff for BS11744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..427 17..390 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:01 Download gff for BS11744.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8202929..8203283 17..371 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:30:53 Download gff for BS11744.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8196029..8196383 17..371 99   Minus

BS11744.5prime Sequence

390 bp (390 high quality bases) assembled on 2006-06-16

> BS11744.5prime
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGTAAAAGCTTTCTAGACC

BS11744.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 20:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-PB 360 CG13679-RB 1..360 17..376 1800 100 Plus
CG13679-PA 438 CG13679-RA 88..438 26..376 1755 100 Plus
CG13678-PA 387 CG13678-RA 21..192 37..208 685 95.9 Plus
CG13674-PA 414 CG13674-RA 67..251 98..282 650 94 Plus
CG13678-PA 387 CG13678-RA 286..338 290..342 240 98.1 Plus
CG13674-PA 414 CG13674-RA 1..53 17..69 240 98.1 Plus
CG13678-PA 387 CG13678-RA 342..387 331..376 155 93.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 489 CG13679-RB 66..427 15..376 1810 100 Plus
CG13674-RB 559 CG13674-RB 65..317 15..282 865 88.4 Plus
CG13674-RA 687 CG13674-RA 65..317 15..282 865 88.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8202933..8203283 26..376 1755 100 Plus
3L 28110227 3L 8218602..8218842 282..27 795 88.3 Minus
3L 28110227 3L 8222475..8222792 37..342 775 83.6 Plus
3L 28110227 3L 8218581..8218639 279..221 190 88.1 Minus
Blast to na_te.dros performed on 2015-02-12 07:06:49 has no hits.

BS11744.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:11 Download gff for BS11744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-PB 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:02 Download gff for BS11744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..427 2..376 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:07 Download gff for BS11744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 54..427 2..376 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:07 Download gff for BS11744.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8202929..8203283 22..376 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:02 Download gff for BS11744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8196029..8196383 22..376 99   Plus

BS11744.complete Sequence

392 bp assembled on 2007-10-17

GenBank Submission: FJ636952

> BS11744.complete
GAAGTTATCAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCT
CCTCTGGCCTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGC
TCCCTATGCCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCT
TCCCAGCTGCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTAT
ACCGCTCCAGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGC
CGCCTACACCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTG
CCGCTCCTCTGCTGCTGAAGAAGTAAAAGCTTTCTAGACCAT

BS11744.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 360 CG13679-PB 1..360 17..376 1800 100 Plus
CG13674-RB 414 CG13674-PB 1..251 17..282 830 88.3 Plus
CG13674-RA 414 CG13674-PA 1..251 17..282 830 88.3 Plus
CG13674-RB 414 CG13674-PB 214..272 221..279 190 88.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-RB 489 CG13679-RB 66..427 15..376 1810 100 Plus
CG13674-RB 559 CG13674-RB 65..317 15..282 840 88.4 Plus
CG13674-RA 687 CG13674-RA 65..317 15..282 840 88.4 Plus
CG13674-RB 559 CG13674-RB 280..338 221..279 190 88.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8202933..8203283 26..376 1755 100 Plus
3L 28110227 3L 8218602..8218842 282..27 795 88.3 Minus
3L 28110227 3L 8222475..8222792 37..342 775 83.6 Plus
3L 28110227 3L 8218581..8218639 279..221 190 88.1 Minus
Blast to na_te.dros performed on 2014-11-28 00:09:07 has no hits.

BS11744.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:14:22 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:45:12 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 52..425 2..376 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:49 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 68..425 17..374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:18 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 66..423 17..374 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:07 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
CG13679-RB 68..425 17..374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:07 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8202929..8203281 22..374 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:49 Download gff for BS11744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8196029..8196381 22..374 99   Plus

BS11744.pep Sequence

Translation from 16 to 375

> BS11744.pep
MKFIAVCFFAVVAVAAAKPGLVAPLAAAPLAYTAPAVVGSAAYVAPYASS
YSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAYAAPIAPYAAAYTSP
LAYSSPYVATAAAPLLLKK*

BS11744.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13679-PB 119 CG13679-PB 1..119 1..119 587 100 Plus
CG13678-PA 128 CG13678-PA 3..128 2..119 439 77.1 Plus
CG13674-PB 137 CG13674-PB 1..119 1..115 426 74.2 Plus
CG13674-PA 137 CG13674-PA 1..119 1..115 426 74.2 Plus
CG13066-PB 93 CG13066-PB 2..90 1..74 201 57.3 Plus