BS11747.complete Sequence
1253 bp assembled on 2006-11-01
GenBank Submission: FJ636954
> BS11747.complete
GAAGTTATCAGTCGACATGGAACGATTGCTGACCATGTTCGAGGAGGCGG
ATCCCTTCGCCACGTGGTGGCCCACGATAGCGGCCCTCACGGTGGGCATT
GTGATTACGGTGCGGACCTTAATGAGCGGCCAGCGCTGTCCGAACGATAA
TCAAATCAAGGAGCAAATCGTGGTGGTCACCGGCGGCAACAGCGGCATTG
GCTTCGAAATAGCCCAGGCTCTGGCTGGCCGAGGTGGCCGGATAATCCTC
GCCTGCCGCAATCTCGAGGCCGGGAAGCGGGCGGCGGCCATAATCAAACG
TGAGCTGGGCTGCCGCACACCCCTGAATTCCTTGGATGAGGATGACAATC
CGGAGGACAGGTACTTCGTGGAGGCACGCTACTTGGACCTCTGTTCGCTG
CGCAGTGTCCATCACTTTGCCGGCCAGCTGATGGCGGAATTCGAGCGGAT
CGATGTGCTGGTGAACAATGCCGGAGTGGTATTCGCCAACACTCAGATGC
CCACCGAGGATGGCTTCGAACGGCACAGCCAGGTGAACTATCTGGCCCCC
TTCCTGTTGACCCACCTGCTCCTGCCACACTTGCAACGCTCGGAGCAAGG
ACGCATCCTCTTCGTTTCCGCCCATGCCCATCAGGGCGCCAAAATCGATT
TCGACGATCCCCTGAATGTGGGCACCTGGTCGGTGAAGTTCCACGCCCGC
GAAGCATTTGCCCACTCCAAGCTCTGCGTGCTCCTTGCCACCCGTTGGAT
GGCCAGGGAACTGAAAGGTACCTCGGTCACGGTCAACTGCTGTACGCCAG
GACTCGTCCGTGGAACCCGCCATTTTCGCAACTCGCCGCTGATGTCGTCC
CTCTGCGTGAAGGCGGTCACCTATCCGTGGATGTGGCTGTTCATGAAGAA
TGCCTACGAGGGCGCCCAGTGCGCCATCCGCTTGGCCACCGATCCCCAGC
TGAAGGAAGTCACCGGCGAGTACTTCAATGATTGCGAAATTGCGGCAAGT
TCGGTGACGGGCCAAGACAAGGAGTTGGCCAAGAAGCTGTATATGCAAAC
CATAAAAACCCTCGAAAGCGTTACCAAGCTAACCGTCGACAGGGAGGAGT
ACGGCTTGGATTTGCAGCTGGAGATGGAGTCTGAGCTGAGGCTGGAGGAA
CCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGATGAAAA
GAAGTGGCAGGGGAATGGTGAGACGAAGCAGCCGTAGAAGCTTTCTAGAC
CAT
BS11747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31235-RB | 1221 | CG31235-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
| CG31235-RA | 1221 | CG31235-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31235-RB | 2494 | CG31235-RB | 125..1345 | 17..1237 | 6105 | 100 | Plus |
| CG31235-RA | 1564 | CG31235-RA | 125..1345 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18326003..18326659 | 770..114 | 3285 | 100 | Minus |
| 3R | 32079331 | 3R | 18317224..18317482 | 1237..979 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 18317615..18317765 | 978..828 | 740 | 99.3 | Minus |
| 3R | 32079331 | 3R | 18328720..18328818 | 115..17 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 18325478..18325543 | 831..766 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:04:20 has no hits.
BS11747.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:47 Download gff for
BS11747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 122..1342 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:06 Download gff for
BS11747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 125..1345 | 17..1237 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:24 Download gff for
BS11747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 113..1347 | 9..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:35 Download gff for
BS11747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 125..1345 | 17..1237 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:35 Download gff for
BS11747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18317224..18317482 | 979..1237 | 100 | <- | Minus |
| 3R | 18317615..18317761 | 832..978 | 100 | <- | Minus |
| 3R | 18325478..18325541 | 768..831 | 100 | <- | Minus |
| 3R | 18326006..18326658 | 115..767 | 100 | <- | Minus |
| 3R | 18328721..18328818 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:06 Download gff for
BS11747.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14142946..14143204 | 979..1237 | 100 | <- | Minus |
| arm_3R | 14143337..14143483 | 832..978 | 100 | <- | Minus |
| arm_3R | 14151200..14151263 | 768..831 | 100 | <- | Minus |
| arm_3R | 14151728..14152380 | 115..767 | 100 | <- | Minus |
| arm_3R | 14154443..14154540 | 17..114 | 100 | | Minus |
BS11747.pep Sequence
Translation from 16 to 1236
> BS11747.pep
MERLLTMFEEADPFATWWPTIAALTVGIVITVRTLMSGQRCPNDNQIKEQ
IVVVTGGNSGIGFEIAQALAGRGGRIILACRNLEAGKRAAAIIKRELGCR
TPLNSLDEDDNPEDRYFVEARYLDLCSLRSVHHFAGQLMAEFERIDVLVN
NAGVVFANTQMPTEDGFERHSQVNYLAPFLLTHLLLPHLQRSEQGRILFV
SAHAHQGAKIDFDDPLNVGTWSVKFHAREAFAHSKLCVLLATRWMARELK
GTSVTVNCCTPGLVRGTRHFRNSPLMSSLCVKAVTYPWMWLFMKNAYEGA
QCAIRLATDPQLKEVTGEYFNDCEIAASSVTGQDKELAKKLYMQTIKTLE
SVTKLTVDREEYGLDLQLEMESELRLEEPAEAEPETETNQAADEKKWQGN
GETKQP*
BS11747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31235-PB | 406 | CG31235-PB | 1..406 | 1..406 | 2125 | 100 | Plus |
| CG31235-PA | 406 | CG31235-PA | 1..406 | 1..406 | 2125 | 100 | Plus |
| CG30495-PA | 327 | CG30495-PA | 21..321 | 26..347 | 442 | 35 | Plus |
| CG2070-PB | 325 | CG2070-PB | 17..319 | 22..347 | 439 | 36.1 | Plus |
| CG2070-PA | 325 | CG2070-PA | 17..319 | 22..347 | 439 | 36.1 | Plus |
