Clone BS11748 Report

Search the DGRC for BS11748

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG31109-RA
Protein status:BS11748.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11748.3prime Sequence

627 bp (627 high quality bases) assembled on 2006-06-16

> BS11748.3prime
ATGGTCTAGAAAGCTTTTAATCTGCATGGGTTCCTTCCCGAGTAGTGCTA
CCCGTTTCCGAGTTGCCTGTGCCAGTCTCTTTTCGGTCTCTATTGCTGGG
CCCAGCACCACTGGCATCGTGGCTTTCGCTGCTGTTTGGTGTGGACACTG
CGGTCTTTGTTGACTTGGGGGATTGGGATTCCTGGGTCTGTGGACCAGTT
TCAGCTTGGGTGCTCGTCGACTCGCTGCGGCGGGTCGCTTGATCCTCCTC
ATTCCGATTGGGGAACTCGTGAACCGAGCTTGAATTTATCACGTCCTCTT
CCGATTCCACGCTGGATATCGAGGGATTTCTTTGTGCTTTGTATTTGATT
AACTTAAACTTGCGCTCCTCCCGCATCCGCGTCAGACGCATCAGGAGCGA
GTAATGCTGCTCCACGCGATGCAGACATGATTTGCATATGGTTTTTGGCA
ATGGATCAGTCGGAGATATTGTAATTGGTAGGTAACCGTTGATTTTCTCA
ACAAGACACAAACGCTGGCCATGATCACTATAAATATGTATTACTGTGCG
GTGCATCTCTGAACACAGTCGGCATAGAAATCCCGATATGCACGCCTTTT
CTATGCTCCCCATGTCGACTGATAACT

BS11748.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-PA 597 CG31109-RA 1..597 613..17 2985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 978 CG31109-RB 145..751 623..17 2990 99.5 Minus
CG31109-RA 870 CG31109-RA 145..751 623..17 2990 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25053596..25053869 17..290 1370 100 Plus
3R 32079331 3R 25054356..25054509 470..623 725 98.1 Plus
3R 32079331 3R 25054042..25054179 332..469 690 100 Plus
3R 32079331 3R 25053933..25053974 290..331 210 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:14:24 has no hits.

BS11748.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:11 Download gff for BS11748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-PA 1..597 17..613 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:04 Download gff for BS11748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..760 7..623 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:40 Download gff for BS11748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..760 7..623 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:40 Download gff for BS11748.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25053933..25053974 290..331 100 <- Plus
3R 25053587..25053868 7..289 98 <- Plus
3R 25054356..25054509 470..623 98   Plus
3R 25054042..25054179 332..469 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:04 Download gff for BS11748.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20879309..20879590 7..289 98 <- Plus
arm_3R 20879655..20879696 290..331 100 <- Plus
arm_3R 20879764..20879901 332..469 100 <- Plus
arm_3R 20880078..20880231 470..623 98   Plus

BS11748.5prime Sequence

627 bp (627 high quality bases) assembled on 2006-06-16

> BS11748.5prime
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATTAAAAGCTTTCTAGACC

BS11748.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-PA 597 CG31109-RA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 978 CG31109-RB 145..751 7..613 2990 99.5 Plus
CG31109-RA 870 CG31109-RA 145..751 7..613 2990 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25053596..25053869 613..340 1370 100 Minus
3R 32079331 3R 25054356..25054509 160..7 725 98.1 Minus
3R 32079331 3R 25054042..25054179 298..161 690 100 Minus
3R 32079331 3R 25053933..25053974 340..299 210 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:14:36 has no hits.

BS11748.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:11 Download gff for BS11748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:06 Download gff for BS11748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..760 7..623 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:42 Download gff for BS11748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 145..760 7..623 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:42 Download gff for BS11748.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25053587..25053868 341..623 98 <- Minus
3R 25053933..25053974 299..340 100 <- Minus
3R 25054042..25054179 161..298 100 <- Minus
3R 25054356..25054509 7..160 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:06 Download gff for BS11748.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20879309..20879590 341..623 98 <- Minus
arm_3R 20879655..20879696 299..340 100 <- Minus
arm_3R 20879764..20879901 161..298 100 <- Minus
arm_3R 20880078..20880231 7..160 98   Minus

BS11748.complete Sequence

629 bp assembled on 2006-11-01

GenBank Submission: FJ636955

> BS11748.complete
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATTAAAAGCTTTCTAGACCAT

BS11748.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 597 CG31109-PB 1..597 17..613 2985 100 Plus
CG31109-RA 597 CG31109-PA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-RB 978 CG31109-RB 145..751 7..613 2990 99.5 Plus
CG31109-RA 870 CG31109-RA 145..751 7..613 2990 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25053596..25053869 613..340 1370 100 Minus
3R 32079331 3R 25054356..25054509 160..7 725 98.1 Minus
3R 32079331 3R 25054042..25054179 298..161 690 100 Minus
3R 32079331 3R 25053933..25053974 340..299 210 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:15:45 has no hits.

BS11748.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:44 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:40 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 126..741 7..623 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:12 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 155..749 17..611 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:44 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 126..741 7..623 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:52 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
CG31109-RA 155..749 17..611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:52 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25054356..25054499 17..160 100   Minus
3R 25053598..25053868 341..611 100 <- Minus
3R 25053933..25053974 299..340 100 <- Minus
3R 25054042..25054179 161..298 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:12 Download gff for BS11748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20880078..20880221 17..160 100   Minus
arm_3R 20879320..20879590 341..611 100 <- Minus
arm_3R 20879655..20879696 299..340 100 <- Minus
arm_3R 20879764..20879901 161..298 100 <- Minus

BS11748.pep Sequence

Translation from 16 to 612

> BS11748.pep
MGSIEKACISGFLCRLCSEMHRTVIHIYSDHGQRLCLVEKINGYLPITIS
PTDPLPKTICKSCLHRVEQHYSLLMRLTRMREERKFKLIKYKAQRNPSIS
SVESEEDVINSSSVHEFPNRNEEDQATRRSESTSTQAETGPQTQESQSPK
STKTAVSTPNSSESHDASGAGPSNRDRKETGTGNSETGSTTREGTHAD*

BS11748.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31109-PB 198 CG31109-PB 1..198 1..198 1030 100 Plus
CG31109-PA 198 CG31109-PA 1..198 1..198 1030 100 Plus