Clone Sequence Records
BS11748.3prime Sequence
627 bp (627 high quality bases) assembled on 2006-06-16
> BS11748.3prime
ATGGTCTAGAAAGCTTTTAATCTGCATGGGTTCCTTCCCGAGTAGTGCTA
CCCGTTTCCGAGTTGCCTGTGCCAGTCTCTTTTCGGTCTCTATTGCTGGG
CCCAGCACCACTGGCATCGTGGCTTTCGCTGCTGTTTGGTGTGGACACTG
CGGTCTTTGTTGACTTGGGGGATTGGGATTCCTGGGTCTGTGGACCAGTT
TCAGCTTGGGTGCTCGTCGACTCGCTGCGGCGGGTCGCTTGATCCTCCTC
ATTCCGATTGGGGAACTCGTGAACCGAGCTTGAATTTATCACGTCCTCTT
CCGATTCCACGCTGGATATCGAGGGATTTCTTTGTGCTTTGTATTTGATT
AACTTAAACTTGCGCTCCTCCCGCATCCGCGTCAGACGCATCAGGAGCGA
GTAATGCTGCTCCACGCGATGCAGACATGATTTGCATATGGTTTTTGGCA
ATGGATCAGTCGGAGATATTGTAATTGGTAGGTAACCGTTGATTTTCTCA
ACAAGACACAAACGCTGGCCATGATCACTATAAATATGTATTACTGTGCG
GTGCATCTCTGAACACAGTCGGCATAGAAATCCCGATATGCACGCCTTTT
CTATGCTCCCCATGTCGACTGATAACT
BS11748.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-PA | 597 | CG31109-RA | 1..597 | 613..17 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 978 | CG31109-RB | 145..751 | 623..17 | 2990 | 99.5 | Minus |
CG31109-RA | 870 | CG31109-RA | 145..751 | 623..17 | 2990 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25053596..25053869 | 17..290 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 25054356..25054509 | 470..623 | 725 | 98.1 | Plus |
3R | 32079331 | 3R | 25054042..25054179 | 332..469 | 690 | 100 | Plus |
3R | 32079331 | 3R | 25053933..25053974 | 290..331 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:14:24 has no hits.
BS11748.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:11 Download gff for
BS11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-PA | 1..597 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:04 Download gff for
BS11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..760 | 7..623 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:40 Download gff for
BS11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..760 | 7..623 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:40 Download gff for
BS11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25053933..25053974 | 290..331 | 100 | <- | Plus |
3R | 25053587..25053868 | 7..289 | 98 | <- | Plus |
3R | 25054356..25054509 | 470..623 | 98 | | Plus |
3R | 25054042..25054179 | 332..469 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:04 Download gff for
BS11748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20879309..20879590 | 7..289 | 98 | <- | Plus |
arm_3R | 20879655..20879696 | 290..331 | 100 | <- | Plus |
arm_3R | 20879764..20879901 | 332..469 | 100 | <- | Plus |
arm_3R | 20880078..20880231 | 470..623 | 98 | | Plus |
BS11748.5prime Sequence
627 bp (627 high quality bases) assembled on 2006-06-16
> BS11748.5prime
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATTAAAAGCTTTCTAGACC
BS11748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-PA | 597 | CG31109-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 978 | CG31109-RB | 145..751 | 7..613 | 2990 | 99.5 | Plus |
CG31109-RA | 870 | CG31109-RA | 145..751 | 7..613 | 2990 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25053596..25053869 | 613..340 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 25054356..25054509 | 160..7 | 725 | 98.1 | Minus |
3R | 32079331 | 3R | 25054042..25054179 | 298..161 | 690 | 100 | Minus |
3R | 32079331 | 3R | 25053933..25053974 | 340..299 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:14:36 has no hits.
BS11748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:11 Download gff for
BS11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:06 Download gff for
BS11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..760 | 7..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:42 Download gff for
BS11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 145..760 | 7..623 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:42 Download gff for
BS11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25053587..25053868 | 341..623 | 98 | <- | Minus |
3R | 25053933..25053974 | 299..340 | 100 | <- | Minus |
3R | 25054042..25054179 | 161..298 | 100 | <- | Minus |
3R | 25054356..25054509 | 7..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:06 Download gff for
BS11748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20879309..20879590 | 341..623 | 98 | <- | Minus |
arm_3R | 20879655..20879696 | 299..340 | 100 | <- | Minus |
arm_3R | 20879764..20879901 | 161..298 | 100 | <- | Minus |
arm_3R | 20880078..20880231 | 7..160 | 98 | | Minus |
BS11748.complete Sequence
629 bp assembled on 2006-11-01
GenBank Submission: FJ636955
> BS11748.complete
GAAGTTATCAGTCGACATGGGGAGCATAGAAAAGGCGTGCATATCGGGAT
TTCTATGCCGACTGTGTTCAGAGATGCACCGCACAGTAATACATATTTAT
AGTGATCATGGCCAGCGTTTGTGTCTTGTTGAGAAAATCAACGGTTACCT
ACCAATTACAATATCTCCGACTGATCCATTGCCAAAAACCATATGCAAAT
CATGTCTGCATCGCGTGGAGCAGCATTACTCGCTCCTGATGCGTCTGACG
CGGATGCGGGAGGAGCGCAAGTTTAAGTTAATCAAATACAAAGCACAAAG
AAATCCCTCGATATCCAGCGTGGAATCGGAAGAGGACGTGATAAATTCAA
GCTCGGTTCACGAGTTCCCCAATCGGAATGAGGAGGATCAAGCGACCCGC
CGCAGCGAGTCGACGAGCACCCAAGCTGAAACTGGTCCACAGACCCAGGA
ATCCCAATCCCCCAAGTCAACAAAGACCGCAGTGTCCACACCAAACAGCA
GCGAAAGCCACGATGCCAGTGGTGCTGGGCCCAGCAATAGAGACCGAAAA
GAGACTGGCACAGGCAACTCGGAAACGGGTAGCACTACTCGGGAAGGAAC
CCATGCAGATTAAAAGCTTTCTAGACCAT
BS11748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 597 | CG31109-PB | 1..597 | 17..613 | 2985 | 100 | Plus |
CG31109-RA | 597 | CG31109-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-RB | 978 | CG31109-RB | 145..751 | 7..613 | 2990 | 99.5 | Plus |
CG31109-RA | 870 | CG31109-RA | 145..751 | 7..613 | 2990 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25053596..25053869 | 613..340 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 25054356..25054509 | 160..7 | 725 | 98.1 | Minus |
3R | 32079331 | 3R | 25054042..25054179 | 298..161 | 690 | 100 | Minus |
3R | 32079331 | 3R | 25053933..25053974 | 340..299 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:15:45 has no hits.
BS11748.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:44 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:40 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 126..741 | 7..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:12 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 155..749 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:44 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 126..741 | 7..623 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:52 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31109-RA | 155..749 | 17..611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:52 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25054356..25054499 | 17..160 | 100 | | Minus |
3R | 25053598..25053868 | 341..611 | 100 | <- | Minus |
3R | 25053933..25053974 | 299..340 | 100 | <- | Minus |
3R | 25054042..25054179 | 161..298 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:12 Download gff for
BS11748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20880078..20880221 | 17..160 | 100 | | Minus |
arm_3R | 20879320..20879590 | 341..611 | 100 | <- | Minus |
arm_3R | 20879655..20879696 | 299..340 | 100 | <- | Minus |
arm_3R | 20879764..20879901 | 161..298 | 100 | <- | Minus |
BS11748.pep Sequence
Translation from 16 to 612
> BS11748.pep
MGSIEKACISGFLCRLCSEMHRTVIHIYSDHGQRLCLVEKINGYLPITIS
PTDPLPKTICKSCLHRVEQHYSLLMRLTRMREERKFKLIKYKAQRNPSIS
SVESEEDVINSSSVHEFPNRNEEDQATRRSESTSTQAETGPQTQESQSPK
STKTAVSTPNSSESHDASGAGPSNRDRKETGTGNSETGSTTREGTHAD*
BS11748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31109-PB | 198 | CG31109-PB | 1..198 | 1..198 | 1030 | 100 | Plus |
CG31109-PA | 198 | CG31109-PA | 1..198 | 1..198 | 1030 | 100 | Plus |