Clone BS11749 Report

Search the DGRC for BS11749

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG9372-RA
Protein status:BS11749.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11749.complete Sequence

1259 bp assembled on 2006-11-01

GenBank Submission: FJ636956

> BS11749.complete
GAAGTTATCAGTCGACATGAAGGCATTTCTTTGGGCATTGGTGATTTTAC
TGGGCTATATCCCGCAGAGTACAATCGCCAAGACTGTATCCACTGATTTT
TTAGATCTTCTCGACTTCAGCGATAATGATGAGTTTCAATGGGGGGAGTC
GGAGAATCAGGTATACGAAAATCGCACTGGGGAAAACCGCGTCGTAAGTT
TCCTGTCCCAACATCGCCTAAACAAGCGACAGGCTCCCACCTCGCAATTG
CTGGAGAACAAGGATTATGGAGCATGTAGCACTCCATTGGGTGAATCCGG
CCGATGTCGCCACATTATCTACTGTCGCATGCCAGAACTTAAGAATGATG
TCTGGCGTCTGGTCTCCCAGCTTTGCATCATTGAGAAAAGCTCCATAGGC
ATTTGCTGCACTGACCAGTCGACGAGCAACCGATTTAGTCCGCAAGTCGT
GACCAGTGCGGACGGTGATGAGCCGCGCATCGTTAATAAGCCGGAGCAGC
GAGGTTGTGGGATCACGTCCAGGCAGTTTCCCCGCCTCACCGGTGGACGG
CCAGCCGAGCCAGACGAGTGGCCTTGGATGGCGGCCCTGCTGCAGGAGGG
TCTGCCCTTCGTTTGGTGCGGTGGTGTCCTGATCACCGACCGTCATGTCC
TAACTGCCGCTCACTGCATCTACAAGAAGAACAAGGAGGACATCTTCGTG
CGTCTGGGCGAGTACAACACGCATATGCTGAATGAGACGAGGGCGAGGGA
TTTCCGGATTGCCAACATGGTGCTCCATATCGATTATAATCCACAGAACT
ACGACAATGATATTGCAATTGTCAGAATCGACAGGGCGACTATATTCAAC
ACCTACATCTGGCCAGTTTGCATGCCGCCCGTGAACGAAGATTGGTCGGA
TAGAAACGCCATTGTCACCGGTTGGGGCACCCAAAAGTTTGGCGGTCCTC
ATTCTAACATCCTCATGGAGGTTAACCTGCCGGTTTGGAAGCAGTCCGAT
TGCAGGTCGTCATTTGTACAGCACGTTCCGGACACTGCCATGTGCGCTGG
ATTTCCGGAAGGAGGTCAGGACTCCTGTCAAGGCGATAGCGGAGGTCCTC
TGTTGGTACAACTTCCCAACCAACGCTGGGTCACGATCGGCATCGTGTCC
TGGGGCGTCGGCTGCGGACAGCGGGGTCGCCCGGGTATCTACACTCGCGT
GGATCGCTACCTGGACTGGATTTTGGCTAATGCAGATGTCTAGAAGCTTT
CTAGACCAT

BS11749.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-RA 1227 CG9372-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-RA 1693 CG9372-RA 374..1600 17..1243 6135 100 Plus
Lon-RC 3761 CG8798-RC 3343..3617 1243..969 1375 100 Minus
Lon-RA 3707 CG8798-RA 3289..3563 1243..969 1375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19607244..19607827 389..972 2920 100 Plus
3L 28110227 3L 19608001..19608275 969..1243 1375 100 Plus
3L 28110227 3L 19606831..19606982 103..254 760 100 Plus
3L 28110227 3L 19607040..19607177 253..390 690 100 Plus
3L 28110227 3L 19606581..19606668 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:23:48 has no hits.

BS11749.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:25 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 1..1227 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:18 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 362..1598 7..1243 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:37 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 374..1600 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:25 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 362..1598 7..1243 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:44 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
CG9372-RA 374..1600 17..1243 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:44 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19606581..19606668 17..104 100 -> Plus
3L 19606833..19606981 105..253 100 -> Plus
3L 19607041..19607177 254..390 100 -> Plus
3L 19607246..19607825 391..970 100 -> Plus
3L 19608003..19608275 971..1243 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:37 Download gff for BS11749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19599933..19600081 105..253 100 -> Plus
arm_3L 19600141..19600277 254..390 100 -> Plus
arm_3L 19601103..19601375 971..1243 100   Plus
arm_3L 19599681..19599768 17..104 100 -> Plus
arm_3L 19600346..19600925 391..970 100 -> Plus

BS11749.pep Sequence

Translation from 16 to 1242

> BS11749.pep
MKAFLWALVILLGYIPQSTIAKTVSTDFLDLLDFSDNDEFQWGESENQVY
ENRTGENRVVSFLSQHRLNKRQAPTSQLLENKDYGACSTPLGESGRCRHI
IYCRMPELKNDVWRLVSQLCIIEKSSIGICCTDQSTSNRFSPQVVTSADG
DEPRIVNKPEQRGCGITSRQFPRLTGGRPAEPDEWPWMAALLQEGLPFVW
CGGVLITDRHVLTAAHCIYKKNKEDIFVRLGEYNTHMLNETRARDFRIAN
MVLHIDYNPQNYDNDIAIVRIDRATIFNTYIWPVCMPPVNEDWSDRNAIV
TGWGTQKFGGPHSNILMEVNLPVWKQSDCRSSFVQHVPDTAMCAGFPEGG
QDSCQGDSGGPLLVQLPNQRWVTIGIVSWGVGCGQRGRPGIYTRVDRYLD
WILANADV*

BS11749.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9372-PA 408 CG9372-PA 1..408 1..408 2230 100 Plus
CG4386-PA 372 CG4386-PA 118..354 164..402 544 44.8 Plus
CG11836-PI 281 CG11836-PI 36..275 164..407 477 37 Plus
CG18735-PA 364 CG18735-PA 82..314 173..405 475 40.7 Plus
CG1299-PB 442 CG1299-PB 95..435 87..403 472 34.6 Plus