Clone Sequence Records
BS11751.3prime Sequence
880 bp (740 high quality bases) assembled on 2006-06-16
> BS11751.3prime
ATGGTCTAGAAAGCTTCTAGATCTTCAAATTAACGCCGGCGTAACCCTTG
GCATTGAGCCCAGTGACCTGGAAGGTGGTACCAGCTGGTTTTGGCTGGTC
GAACTTGTTGGCGGTTGTCACATACAAAATATCCAAATTGGGACCTCCAA
AAGCCACCGAGGTGATTTGGGTGGTTGGAATTTTGATCTCCAGCAGAATT
TTACCGGTGCTTGGATTGACCTTGAAGACGGTGCCACCATTGAAGGTGGC
CACGTAGATATTGCCATCGGTGTCTACGGTCATGCCATCAGGGAACAATG
GTCCTTCGGGCCGAATCTTCCTCAGATCGAAGATGACCTTTGGGTTGCTT
ACGGCGCCGGTGCTCTGATTGTAGTCATAGGCCAATACCTCGTGGTTGTT
GGTGTCGATGAAGTAGAACTTCTTGGCCTTGACATCCCAGGCCAGGCCAT
TGGATATGCCCACCTTGCTACGGATAGCGTTGGGCTGTCCACCGGCCTGC
CAGCTGTAGAGCTCACCCTTCCATTGGGTGAATATGTCGCCACTGTCGGC
CATGGTGCCACCGTAAAAACGGCCATTGGGATCGGTTTTGGCATCATTAA
GGCGGTTTTCCTTCAGGTCCGGCTGCACCTCGAACAGGGTGCGAGTGACC
TTGGCCACTGCGGAGACTCCATCCCACTGGACGATGACCGTACGAAGACC
GCATCCTACGGCNAACTCCTGCGGTTTGTTCTCAACCGGCAGAATGAACG
ATGCAAATATCTCGCCCTCGATTTTAGCCCTGTACACTTTGTTCTGCTTT
GAATCATAACGATTATTGCCGGCGGATTCGAGGTCCACGTAGTACAGACT
CTGGCGAATCACATCCCAGTGGGGTCCCTC
BS11751.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7390-PA | 912 | smp-30-RA | 72..912 | 857..17 | 4111 | 99.5 | Minus |
CG7390-PB | 912 | smp-30-RB | 72..912 | 857..17 | 4111 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 1297 | CG7390-RD | 370..1234 | 880..16 | 4224 | 99.3 | Minus |
smp-30-RC | 1102 | CG7390-RC | 175..1039 | 880..16 | 4224 | 99.3 | Minus |
smp-30-RB | 1219 | CG7390-RB | 101..965 | 880..16 | 4224 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14747077 | 210..880 | 3254 | 99 | Plus |
3R | 32079331 | 3R | 14746155..14746350 | 16..211 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:39:47 has no hits.
BS11751.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:12 Download gff for
BS11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7390-PB | 49..912 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:32:48 Download gff for
BS11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 101..967 | 11..880 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:43 Download gff for
BS11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 101..967 | 11..880 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:43 Download gff for
BS11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746153..14746348 | 11..209 | 98 | <- | Plus |
3R | 14746407..14747077 | 210..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:32:48 Download gff for
BS11751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10571875..10572070 | 11..209 | 98 | <- | Plus |
arm_3R | 10572129..10572799 | 210..880 | 99 | | Plus |
BS11751.5prime Sequence
892 bp (832 high quality bases) assembled on 2006-06-16
> BS11751.5prime
GAAGTTATCAGTCGACATGTCATACAAGGTTGAAGCTGTTCCCGATTCCT
ACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCGCCAGAGTCTG
TACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATGATTTCAAGCA
GAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTTGCATCGTTCA
TTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGGATGCGGTCTT
CGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGGCCAAGGTCAC
TCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAACCGCCTTAATG
ATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCACCATGGCCGAC
AGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACAGCTGGCAGGC
CGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATATCCAATGGCC
TGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGACACCAACAAC
CACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCGCCGTAAGCAA
CCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAAGGACCATTGT
TCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTACGTGGCCACC
TTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCGGTAAAATTCT
GCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTGGCTTTTGGAG
GTCCCAATTTGGATATTTTGTATGTGACAACCGCCCACAAGTTCGACCAG
CCAAAACCAGCTGGTACCACCTTCCAGGTCACTGGGCTCAAT
BS11751.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7390-PA | 912 | smp-30-RA | 1..876 | 17..892 | 4355 | 99.8 | Plus |
CG7390-PB | 912 | smp-30-RB | 1..876 | 17..892 | 4355 | 99.8 | Plus |
CG1803-PA | 912 | regucalcin-RA | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG1803-PC | 912 | regucalcin-RC | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG1803-PB | 912 | regucalcin-RB | 25..68 | 41..84 | 145 | 93.1 | Plus |
CG1803-PD | 960 | regucalcin-RD | 73..116 | 41..84 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 1297 | CG7390-RD | 322..1197 | 17..892 | 4365 | 99.9 | Plus |
smp-30-RC | 1102 | CG7390-RC | 127..1002 | 17..892 | 4365 | 99.9 | Plus |
smp-30-RB | 1219 | CG7390-RB | 53..928 | 17..892 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14747125 | 735..17 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 14746192..14746350 | 892..734 | 780 | 99.4 | Minus |
X | 23542271 | X | 12016003..12016718 | 17..732 | 475 | 71.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 08:14:21 has no hits.
BS11751.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:12 Download gff for
BS11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7390-PB | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 13:21:39 Download gff for
BS11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..928 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:42 Download gff for
BS11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..928 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:42 Download gff for
BS11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746192..14746348 | 736..892 | 99 | <- | Minus |
3R | 14746407..14747129 | 12..735 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 13:21:39 Download gff for
BS11751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10571914..10572070 | 736..892 | 99 | <- | Minus |
arm_3R | 10572129..10572851 | 12..735 | 99 | | Minus |
BS11751.complete Sequence
944 bp assembled on 2006-11-01
GenBank Submission: FJ636958
> BS11751.complete
GAAGTTATCAGTCGACATGTCATACAAGGTTGAAGCTGTTCCCGATTCCT
ACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCGCCAGAGTCTG
TACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATGATTTCAAGCA
GAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTTGCATCGTTCA
TTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGGATGCGGTCTT
CGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGGCCAAGGTCAC
TCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAACCGCCTTAATG
ATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCACCATGGCCGAC
AGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACAGCTGGCAGGC
CGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATATCCAATGGCC
TGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGACACCAACAAC
CACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCGCCGTAAGCAA
CCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAAGGACCATTGT
TCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTACGTGGCCACC
TTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCGGTAAAATTCT
GCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTGGCTTTTGGAG
GTCCCAATTTGGATATTTTGTATGTGACAACCGCCAACAAGTTCGACCAG
CCAAAACCAGCTGGTACCACCTTCCAGGTCACTGGGCTCAATGCCAAGGG
TTACGCCGGCGTTAATTTGAAGATCTAGAAGCTTTCTAGACCAT
BS11751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 912 | CG7390-PD | 1..912 | 17..928 | 4560 | 100 | Plus |
smp-30-RC | 921 | CG7390-PC | 10..921 | 17..928 | 4560 | 100 | Plus |
smp-30-RB | 912 | CG7390-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-RD | 1297 | CG7390-RD | 322..1234 | 17..929 | 4565 | 100 | Plus |
smp-30-RC | 1102 | CG7390-RC | 127..1039 | 17..929 | 4565 | 100 | Plus |
smp-30-RB | 1219 | CG7390-RB | 53..965 | 17..929 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14746407..14747125 | 735..17 | 3595 | 100 | Minus |
3R | 32079331 | 3R | 14746155..14746350 | 929..734 | 980 | 100 | Minus |
X | 23542271 | X | 12016003..12016718 | 17..732 | 475 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:04:32 has no hits.
BS11751.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:23 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:35 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 49..963 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:53 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..964 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:24 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 49..963 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:40 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
smp-30-RB | 53..964 | 17..928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:40 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14746156..14746348 | 736..928 | 100 | <- | Minus |
3R | 14746407..14747125 | 17..735 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:53 Download gff for
BS11751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10571878..10572070 | 736..928 | 100 | <- | Minus |
arm_3R | 10572129..10572847 | 17..735 | 100 | | Minus |
BS11751.pep Sequence
Translation from 16 to 927
> BS11751.pep
MSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNKVYR
AKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRTLFE
VQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGGQPN
AIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPKVIF
DLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLEIKI
PTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYAGVN
LKI*
BS11751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
smp-30-PD | 303 | CG7390-PD | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PB | 303 | CG7390-PB | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PA | 303 | CG7390-PA | 1..303 | 1..303 | 1599 | 100 | Plus |
smp-30-PC | 306 | CG7390-PC | 4..306 | 1..303 | 1599 | 100 | Plus |
regucalcin-PB | 303 | CG1803-PB | 1..303 | 1..303 | 1173 | 71.9 | Plus |