Clone BS11755 Report

Search the DGRC for BS11755

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptRpL35A-RA
Protein status:BS11755.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11755.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-06-16

> BS11755.3prime
ATGGTCTAGAAAGCTTTTAAATCCTTGATGGGTACAGCATGATGCGGATG
CGGTGGCCCATGGCATGACCGGGCAGGTTCCTGTTGAAACGGGCACGCAC
AGCGCCGGTGTTGCCGTGGATGCGGGTGACCTTGCCCCAGACAGCGCGGA
CGCGGGTCTTGCGCTCGGGATGCTGCGGCACGCACTTCTTGGTCTCGGCC
TTGTAGACATAGACGCAACGCTTCCCAACGTAGAAGGATCCGTGCTCCTT
GCGGCGGGCGCCCTCAATCTTGAGGATGGCCTGGTTCTCGTGCTGGTTCC
TCAGACCACGCTTGTAGCCGGTGAAGACGGCCTTGGCGAAGAGGCGTCCG
TGACGCTTGTACTTCTTGGCGGAAACTTTAGCCTCTGAGGCGGCGGGCTT
CTCGGCCTTAGGCGCCTTGACGGCCTTGGGAGCCTTCTGGGCCTTGGCGG
CCTTGGGCGCAGTAGTGGACTTGGCTTGTGTGTCGGCCATGTCGACTGAT
AACT

BS11755.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2099-PA 474 RpL35A-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 621 CG2099-RA 69..543 491..17 2375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5465800..5466029 41..270 1150 100 Plus
3R 32079331 3R 5466153..5466375 269..491 1115 100 Plus
Blast to na_te.dros performed 2015-02-10 21:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7106..7141 251..286 108 77.8 Plus

BS11755.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:14 Download gff for BS11755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2099-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:46:16 Download gff for BS11755.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..546 11..497 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:06 Download gff for BS11755.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..546 11..497 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:06 Download gff for BS11755.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5465800..5466027 41..268 100 <- Plus
3R 5466153..5466378 269..497 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:46:16 Download gff for BS11755.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1291522..1291749 41..268 100 <- Plus
arm_3R 1291875..1292100 269..497 98   Plus

BS11755.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-06-16

> BS11755.5prime
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTTAAAAGCTTTCTA
GACC

BS11755.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2099-PA 474 RpL35A-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 621 CG2099-RA 69..543 16..490 2375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5465800..5466029 466..237 1150 100 Minus
3R 32079331 3R 5466153..5466375 238..16 1115 100 Minus
Blast to na_te.dros performed 2015-02-06 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7106..7141 256..221 108 77.8 Minus

BS11755.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:15 Download gff for BS11755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2099-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:28 Download gff for BS11755.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..546 10..496 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:01 Download gff for BS11755.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 66..546 10..496 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:01 Download gff for BS11755.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5465800..5466027 239..466 100 <- Minus
3R 5466153..5466378 10..238 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:28 Download gff for BS11755.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1291522..1291749 239..466 100 <- Minus
arm_3R 1291875..1292100 10..238 98   Minus

BS11755.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ636959

> BS11755.complete
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTTAAAAGCTTTCTA
GACCAT

BS11755.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 474 CG2099-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-RA 621 CG2099-RA 69..543 16..490 2375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5465800..5466029 466..237 1150 100 Minus
3R 32079331 3R 5466153..5466375 238..16 1115 100 Minus
Blast to na_te.dros performed 2014-11-27 10:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7106..7141 256..221 108 77.8 Minus

BS11755.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:11 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:00 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 62..542 10..496 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:47 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 70..541 17..488 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:12 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 62..542 10..496 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:20 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
RpL35A-RA 70..541 17..488 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:20 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5465710..5465731 467..488 100 <- Minus
3R 5465800..5466027 239..466 100 <- Minus
3R 5466153..5466374 17..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:47 Download gff for BS11755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1291432..1291453 467..488 100 <- Minus
arm_3R 1291522..1291749 239..466 100 <- Minus
arm_3R 1291875..1292096 17..238 100   Minus

BS11755.pep Sequence

Translation from 16 to 489

> BS11755.pep
MADTQAKSTTAPKAAKAQKAPKAVKAPKAEKPAASEAKVSAKKYKRHGRL
FAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAET
KKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRI
MLYPSRI*

BS11755.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpL35A-PA 157 CG2099-PA 1..157 1..157 819 100 Plus