Clone Sequence Records
BS11755.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-06-16
> BS11755.3prime
ATGGTCTAGAAAGCTTTTAAATCCTTGATGGGTACAGCATGATGCGGATG
CGGTGGCCCATGGCATGACCGGGCAGGTTCCTGTTGAAACGGGCACGCAC
AGCGCCGGTGTTGCCGTGGATGCGGGTGACCTTGCCCCAGACAGCGCGGA
CGCGGGTCTTGCGCTCGGGATGCTGCGGCACGCACTTCTTGGTCTCGGCC
TTGTAGACATAGACGCAACGCTTCCCAACGTAGAAGGATCCGTGCTCCTT
GCGGCGGGCGCCCTCAATCTTGAGGATGGCCTGGTTCTCGTGCTGGTTCC
TCAGACCACGCTTGTAGCCGGTGAAGACGGCCTTGGCGAAGAGGCGTCCG
TGACGCTTGTACTTCTTGGCGGAAACTTTAGCCTCTGAGGCGGCGGGCTT
CTCGGCCTTAGGCGCCTTGACGGCCTTGGGAGCCTTCTGGGCCTTGGCGG
CCTTGGGCGCAGTAGTGGACTTGGCTTGTGTGTCGGCCATGTCGACTGAT
AACT
BS11755.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2099-PA | 474 | RpL35A-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 621 | CG2099-RA | 69..543 | 491..17 | 2375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5465800..5466029 | 41..270 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 5466153..5466375 | 269..491 | 1115 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 251..286 | 108 | 77.8 | Plus |
BS11755.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:14 Download gff for
BS11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2099-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:46:16 Download gff for
BS11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..546 | 11..497 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:06 Download gff for
BS11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..546 | 11..497 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:06 Download gff for
BS11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5465800..5466027 | 41..268 | 100 | <- | Plus |
3R | 5466153..5466378 | 269..497 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:46:16 Download gff for
BS11755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1291522..1291749 | 41..268 | 100 | <- | Plus |
arm_3R | 1291875..1292100 | 269..497 | 98 | | Plus |
BS11755.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-06-16
> BS11755.5prime
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTTAAAAGCTTTCTA
GACC
BS11755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2099-PA | 474 | RpL35A-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 621 | CG2099-RA | 69..543 | 16..490 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5465800..5466029 | 466..237 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 5466153..5466375 | 238..16 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 10:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 256..221 | 108 | 77.8 | Minus |
BS11755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:15 Download gff for
BS11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2099-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:28 Download gff for
BS11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..546 | 10..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:01 Download gff for
BS11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 66..546 | 10..496 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:01 Download gff for
BS11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5465800..5466027 | 239..466 | 100 | <- | Minus |
3R | 5466153..5466378 | 10..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:28 Download gff for
BS11755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1291522..1291749 | 239..466 | 100 | <- | Minus |
arm_3R | 1291875..1292100 | 10..238 | 98 | | Minus |
BS11755.complete Sequence
506 bp assembled on 2006-11-01
GenBank Submission: FJ636959
> BS11755.complete
GAAGTTATCAGTCGACATGGCCGACACACAAGCCAAGTCCACTACTGCGC
CCAAGGCCGCCAAGGCCCAGAAGGCTCCCAAGGCCGTCAAGGCGCCTAAG
GCCGAGAAGCCCGCCGCCTCAGAGGCTAAAGTTTCCGCCAAGAAGTACAA
GCGTCACGGACGCCTCTTCGCCAAGGCCGTCTTCACCGGCTACAAGCGTG
GTCTGAGGAACCAGCACGAGAACCAGGCCATCCTCAAGATTGAGGGCGCC
CGCCGCAAGGAGCACGGATCCTTCTACGTTGGGAAGCGTTGCGTCTATGT
CTACAAGGCCGAGACCAAGAAGTGCGTGCCGCAGCATCCCGAGCGCAAGA
CCCGCGTCCGCGCTGTCTGGGGCAAGGTCACCCGCATCCACGGCAACACC
GGCGCTGTGCGTGCCCGTTTCAACAGGAACCTGCCCGGTCATGCCATGGG
CCACCGCATCCGCATCATGCTGTACCCATCAAGGATTTAAAAGCTTTCTA
GACCAT
BS11755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 474 | CG2099-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-RA | 621 | CG2099-RA | 69..543 | 16..490 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5465800..5466029 | 466..237 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 5466153..5466375 | 238..16 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 7106..7141 | 256..221 | 108 | 77.8 | Minus |
BS11755.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:11 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:00 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 62..542 | 10..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:47 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 70..541 | 17..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:12 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 62..542 | 10..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:20 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL35A-RA | 70..541 | 17..488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:20 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5465710..5465731 | 467..488 | 100 | <- | Minus |
3R | 5465800..5466027 | 239..466 | 100 | <- | Minus |
3R | 5466153..5466374 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:47 Download gff for
BS11755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1291432..1291453 | 467..488 | 100 | <- | Minus |
arm_3R | 1291522..1291749 | 239..466 | 100 | <- | Minus |
arm_3R | 1291875..1292096 | 17..238 | 100 | | Minus |
BS11755.pep Sequence
Translation from 16 to 489
> BS11755.pep
MADTQAKSTTAPKAAKAQKAPKAVKAPKAEKPAASEAKVSAKKYKRHGRL
FAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAET
KKCVPQHPERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRI
MLYPSRI*
BS11755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL35A-PA | 157 | CG2099-PA | 1..157 | 1..157 | 819 | 100 | Plus |