BS11757.complete Sequence
1382 bp assembled on 2006-11-01
GenBank Submission: FJ636960
> BS11757.complete
GAAGTTATCAGTCGACATGGATCCGACGCGAGGTGACTCGCGGTACAATC
TCAACTACTCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGAC
ATGTACGGCAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCT
GCTCCAGAACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGG
CAGGAGCACCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCAC
GCCTCCCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCA
GCAGCAACAACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGC
GCTCCGGCAGCGACTGCTACGAGGATCACCACCGCTCGTCCGGCGGACTC
ACCCTCCAAGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGT
AGACAACTACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCA
AAAAGACAAAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAG
CTGCGTCGCTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAA
GGCCTACGAGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGG
CCAGCGAGACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCG
ATGATCACCTCGGAGGCGGGAAAGCAGCTCATCCAGACCTGCCTCAACTC
GCCGGATCCGCCCAGTGTGGGCGGCGGCGACCAACGGATGTCGGCCACCG
GGTTCGAGGAGACGGAGCTCAGCTACAACATCGCCGACGAGGACTCGAAA
GATGACCGATCGCCTACCTCGTCGGGCAACGAGTCGGATGATTCGTCGGA
CGTGGAGATGCCGGCGGAGGCTGCTGAGGTGGCAACCAAGTTGCCGGCCA
GCAAAACAGAGGTATCAGCGCCTCCAGCAGCCTCATGCTCGGCGGCCACC
GCTTCCTCTGGCCACAAAACCATGCCAGCATTGAACTATCAGACTGACAC
CAACAGCGGACCCTCAACGTCCACCGCCGCCGGAGGAGGAGGCTCGGCGG
ACAGCAAGTACGTCTACTCCGCTGCCTCGATTGCCAACATACCGCAGAAG
ATGCTGAGGCAGCTCATCCAGTCAGGCCACTTGCAGGTGCACGCCGAAGA
GGATGGCAACCAGTATGTGACCATACCGCTCAGCTCCACAGCAGCCAATC
TGATAAAGAGCAATAAGCTAACAGCCTCTGGATCAGGAGCCTCAGGATCG
GGAACGCCCGTCAAGAACGATGCCAGTGCCGATAAGCCCTTGACCATCAA
ACAGGAGTTCGATTAGAAGCTTTCTAGACCAT
BS11757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bs-RC | 1350 | CG3411-PC | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| bs-RA | 1350 | CG3411-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| bs-RB | 1068 | CG3411-PB | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bs-RC | 3062 | CG3411-RC | 1230..2579 | 17..1366 | 6750 | 100 | Plus |
| bs-RA | 2221 | CG3411-RA | 389..1738 | 17..1366 | 6750 | 100 | Plus |
| bs-RB | 3792 | CG3411-RB | 1230..2064 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24344090..24344675 | 17..602 | 2930 | 100 | Plus |
| 2R | 25286936 | 2R | 24375415..24375766 | 851..1202 | 1760 | 100 | Plus |
| 2R | 25286936 | 2R | 24348210..24348461 | 600..851 | 1260 | 100 | Plus |
| 2R | 25286936 | 2R | 24375826..24375990 | 1202..1366 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:03:57 has no hits.
BS11757.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:13 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:44 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 378..1727 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:03 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 389..1738 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:13 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 373..1727 | 8..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:27 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 389..1738 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:27 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24375827..24375990 | 1203..1366 | 100 | | Plus |
| 2R | 24344090..24344674 | 17..601 | 100 | -> | Plus |
| 2R | 24348212..24348460 | 602..850 | 100 | -> | Plus |
| 2R | 24375415..24375766 | 851..1202 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:03 Download gff for
BS11757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20231613..20232197 | 17..601 | 100 | -> | Plus |
| arm_2R | 20235735..20235983 | 602..850 | 100 | -> | Plus |
| arm_2R | 20262938..20263289 | 851..1202 | 100 | -> | Plus |
| arm_2R | 20263350..20263513 | 1203..1366 | 100 | | Plus |
BS11757.pep Sequence
Translation from 16 to 1365
> BS11757.pep
MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG
GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ
QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP
LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS
TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS
VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA
EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS
TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY
VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFD*
BS11757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bs-PC | 449 | CG3411-PC | 1..449 | 1..449 | 2321 | 100 | Plus |
| bs-PA | 449 | CG3411-PA | 1..449 | 1..449 | 2321 | 100 | Plus |
| bs-PB | 355 | CG3411-PB | 1..278 | 1..278 | 1465 | 100 | Plus |
| Hr38-PD | 836 | CG1864-PD | 45..430 | 73..432 | 162 | 24.4 | Plus |
| Hr38-PB | 1078 | CG1864-PB | 287..672 | 73..432 | 162 | 24.4 | Plus |
