Clone BS11758 Report

Search the DGRC for BS11758

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptRpS5b-RA
Protein status:BS11758.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11758.3prime Sequence

723 bp (718 high quality bases) assembled on 2006-06-16

> BS11758.3prime
ATGGTCTAGAAAGCTTTTAACGATTCGACTTGGCCACGCGCTCCAACTCG
TCCTTCTTCTTGATGGCGTAGGAGTTGGAGGATCCCTTGGCGGCGTTGAT
CAGCTCATCAGCCAGACACTCGGCCACCGTCTTGATGTTGCGGAAGGCAG
CCTCACGTGCTCCAGTGCAGATTAGCCAAATTGCCTGGTTGACACGACGC
AAGGGCGACACATCGACTGCCTGGCGGCGCACAGTGCCGGCGCGTCCGAT
TCGCGTGGAGTCCTCGCGCGGACCGGAATTGACGATGGCGTTGACGGTGA
CCTGAAGCGGATTCTCCGAGGTTAGCAGATGGATGATCTCGAAGGCGTGC
TTGACGATGCGGCAGGCGAGGAGCTTCTTGCCGTTGCTGCGCCCCTTCAT
CATCAGCCCGCTGGTGAGGCGCTCCACGATGGGGCATTGGGCCTTGCGGA
ATCTCTTGGCCGCATAGCGTCCGGCGGAGTGCGGCAGGTAGCGGGCGAAC
TTCTCCTTTACGGCAATGTAGTCCTGCAGCGAGATGTCGCTGATGGAGAT
GTCGTCGCAGGCCCAGCGCCCGAAAAGCTTGATTTCCGGCCACTCGGTGA
CCTCCTGGGCCGGCATTGTGGTAACGACATCGTCAGCCCAGTCCTCCTGC
TCCTGCGGTATAACCTGGCTCGCCTCCTGGCTGCTGGACTCCACCACTTC
CTCGGACATGTCGACTGATAACT

BS11758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7014-PA 693 RpS5b-RA 1..693 709..17 3465 100 Minus
CG8922-PA 687 RpS5a-RA 580..677 124..27 290 91.8 Minus
CG8922-PA 687 RpS5a-RA 196..284 508..420 170 87.6 Minus
CG8922-PA 687 RpS5a-RA 337..380 367..324 145 93.1 Minus
CG8922-PA 687 RpS5a-RA 478..521 226..183 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 874 CG7014-RA 83..779 713..17 3470 99.9 Minus
RpS5b-RB 951 CG7014-RB 83..612 713..184 2635 99.8 Minus
RpS5a-RD 809 CG8922-RD 121..694 590..17 1490 84 Minus
RpS5b-RB 951 CG7014-RB 687..856 186..17 850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901481 180..713 2640 99.6 Plus
3R 32079331 3R 14900527..14900697 17..187 855 100 Plus
X 23542271 X 17146796..17147086 300..590 720 83.2 Plus
X 23542271 X 17144617..17144718 85..186 300 86.3 Plus
X 23542271 X 17145015..17145126 184..295 290 83.9 Plus
X 23542271 X 17143703..17143773 17..87 250 90.1 Plus
Blast to na_te.dros performed on 2015-01-31 10:02:28 has no hits.

BS11758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:15 Download gff for BS11758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7014-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:49 Download gff for BS11758.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 12..718 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:36 Download gff for BS11758.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 79..782 12..718 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:36 Download gff for BS11758.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14900524..14900694 12..184 98 <- Plus
3R 14900953..14901485 185..718 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:49 Download gff for BS11758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726246..10726416 12..184 98 <- Plus
arm_3R 10726675..10727207 185..718 99   Plus

BS11758.5prime Sequence

723 bp (669 high quality bases) assembled on 2006-06-16

> BS11758.5prime
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTTAAAAGCTTTCTAGACC

BS11758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7014-PA 693 RpS5b-RA 1..693 17..709 3465 100 Plus
CG8922-PA 687 RpS5a-RA 580..677 602..699 290 91.8 Plus
CG8922-PA 687 RpS5a-RA 196..284 218..306 170 87.6 Plus
CG8922-PA 687 RpS5a-RA 337..380 359..402 145 93.1 Plus
CG8922-PA 687 RpS5a-RA 478..521 500..543 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 874 CG7014-RA 83..779 13..709 3470 99.9 Plus
RpS5b-RB 951 CG7014-RB 83..612 13..542 2635 99.8 Plus
RpS5a-RD 809 CG8922-RD 121..694 136..709 1490 84 Plus
RpS5b-RB 951 CG7014-RB 687..856 540..709 850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901481 546..13 2640 99.6 Minus
3R 32079331 3R 14900527..14900697 709..539 855 100 Minus
X 23542271 X 17146796..17147086 426..136 720 83.2 Minus
X 23542271 X 17144617..17144718 641..540 300 86.3 Minus
X 23542271 X 17145015..17145126 542..431 290 83.9 Minus
X 23542271 X 17143703..17143773 709..639 250 90.1 Minus
Blast to na_te.dros performed on 2015-02-10 20:52:25 has no hits.

BS11758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:16 Download gff for BS11758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7014-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:10 Download gff for BS11758.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 8..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:55 Download gff for BS11758.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 79..782 8..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:55 Download gff for BS11758.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14900524..14900694 542..714 98 <- Minus
3R 14900953..14901485 8..541 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:10 Download gff for BS11758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726675..10727207 8..541 99   Minus
arm_3R 10726246..10726416 542..714 98 <- Minus

BS11758.complete Sequence

725 bp assembled on 2006-11-01

GenBank Submission: FJ636961

> BS11758.complete
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTTAAAAGCTTTCTAGACCAT

BS11758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 693 CG7014-PA 1..693 17..709 3465 100 Plus
RpS5b-RB 543 CG7014-PB 1..526 17..542 2630 100 Plus
RpS5a-RD 687 CG8922-PD 114..687 136..709 1490 84 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-RA 874 CG7014-RA 83..779 13..709 3470 99.9 Plus
RpS5b-RB 951 CG7014-RB 83..612 13..542 2635 99.8 Plus
RpS5a-RD 809 CG8922-RD 121..694 136..709 1490 84 Plus
RpS5b-RB 951 CG7014-RB 687..856 540..709 850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14900948..14901481 546..13 2640 99.6 Minus
3R 32079331 3R 14900527..14900697 709..539 855 100 Minus
X 23542271 X 17146796..17147086 426..136 720 83.2 Minus
X 23542271 X 17144617..17144718 641..540 300 86.3 Minus
X 23542271 X 17145015..17145126 542..431 290 83.9 Minus
X 23542271 X 17143703..17143773 709..639 250 90.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:40:58 has no hits.

BS11758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:14 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:04 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 8..714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:20 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 112..802 17..707 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:14 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 104..807 8..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:10 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5b-RA 87..777 17..707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:10 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14900529..14900694 542..707 100 <- Minus
3R 14900953..14901477 17..541 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:20 Download gff for BS11758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10726251..10726416 542..707 100 <- Minus
arm_3R 10726675..10727199 17..541 100   Minus

BS11758.pep Sequence

Translation from 16 to 708

> BS11758.pep
MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA
CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS
GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED
STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA
DELINAAKGSSNSYAIKKKDELERVAKSNR*

BS11758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5b-PA 230 CG7014-PA 1..230 1..230 1168 100 Plus
RpS5a-PD 228 CG8922-PD 4..228 1..230 929 79.1 Plus
RpS5a-PC 228 CG8922-PC 4..228 1..230 929 79.1 Plus
RpS5a-PB 228 CG8922-PB 4..228 1..230 929 79.1 Plus
RpS5a-PA 228 CG8922-PA 4..228 1..230 929 79.1 Plus