Clone Sequence Records
BS11758.3prime Sequence
723 bp (718 high quality bases) assembled on 2006-06-16
> BS11758.3prime
ATGGTCTAGAAAGCTTTTAACGATTCGACTTGGCCACGCGCTCCAACTCG
TCCTTCTTCTTGATGGCGTAGGAGTTGGAGGATCCCTTGGCGGCGTTGAT
CAGCTCATCAGCCAGACACTCGGCCACCGTCTTGATGTTGCGGAAGGCAG
CCTCACGTGCTCCAGTGCAGATTAGCCAAATTGCCTGGTTGACACGACGC
AAGGGCGACACATCGACTGCCTGGCGGCGCACAGTGCCGGCGCGTCCGAT
TCGCGTGGAGTCCTCGCGCGGACCGGAATTGACGATGGCGTTGACGGTGA
CCTGAAGCGGATTCTCCGAGGTTAGCAGATGGATGATCTCGAAGGCGTGC
TTGACGATGCGGCAGGCGAGGAGCTTCTTGCCGTTGCTGCGCCCCTTCAT
CATCAGCCCGCTGGTGAGGCGCTCCACGATGGGGCATTGGGCCTTGCGGA
ATCTCTTGGCCGCATAGCGTCCGGCGGAGTGCGGCAGGTAGCGGGCGAAC
TTCTCCTTTACGGCAATGTAGTCCTGCAGCGAGATGTCGCTGATGGAGAT
GTCGTCGCAGGCCCAGCGCCCGAAAAGCTTGATTTCCGGCCACTCGGTGA
CCTCCTGGGCCGGCATTGTGGTAACGACATCGTCAGCCCAGTCCTCCTGC
TCCTGCGGTATAACCTGGCTCGCCTCCTGGCTGCTGGACTCCACCACTTC
CTCGGACATGTCGACTGATAACT
BS11758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7014-PA | 693 | RpS5b-RA | 1..693 | 709..17 | 3465 | 100 | Minus |
CG8922-PA | 687 | RpS5a-RA | 580..677 | 124..27 | 290 | 91.8 | Minus |
CG8922-PA | 687 | RpS5a-RA | 196..284 | 508..420 | 170 | 87.6 | Minus |
CG8922-PA | 687 | RpS5a-RA | 337..380 | 367..324 | 145 | 93.1 | Minus |
CG8922-PA | 687 | RpS5a-RA | 478..521 | 226..183 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 874 | CG7014-RA | 83..779 | 713..17 | 3470 | 99.9 | Minus |
RpS5b-RB | 951 | CG7014-RB | 83..612 | 713..184 | 2635 | 99.8 | Minus |
RpS5a-RD | 809 | CG8922-RD | 121..694 | 590..17 | 1490 | 84 | Minus |
RpS5b-RB | 951 | CG7014-RB | 687..856 | 186..17 | 850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14900948..14901481 | 180..713 | 2640 | 99.6 | Plus |
3R | 32079331 | 3R | 14900527..14900697 | 17..187 | 855 | 100 | Plus |
X | 23542271 | X | 17146796..17147086 | 300..590 | 720 | 83.2 | Plus |
X | 23542271 | X | 17144617..17144718 | 85..186 | 300 | 86.3 | Plus |
X | 23542271 | X | 17145015..17145126 | 184..295 | 290 | 83.9 | Plus |
X | 23542271 | X | 17143703..17143773 | 17..87 | 250 | 90.1 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:02:28 has no hits.
BS11758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:15 Download gff for
BS11758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7014-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:49 Download gff for
BS11758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 12..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:36 Download gff for
BS11758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 79..782 | 12..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:36 Download gff for
BS11758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14900524..14900694 | 12..184 | 98 | <- | Plus |
3R | 14900953..14901485 | 185..718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:49 Download gff for
BS11758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10726246..10726416 | 12..184 | 98 | <- | Plus |
arm_3R | 10726675..10727207 | 185..718 | 99 | | Plus |
BS11758.5prime Sequence
723 bp (669 high quality bases) assembled on 2006-06-16
> BS11758.5prime
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTTAAAAGCTTTCTAGACC
BS11758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7014-PA | 693 | RpS5b-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
CG8922-PA | 687 | RpS5a-RA | 580..677 | 602..699 | 290 | 91.8 | Plus |
CG8922-PA | 687 | RpS5a-RA | 196..284 | 218..306 | 170 | 87.6 | Plus |
CG8922-PA | 687 | RpS5a-RA | 337..380 | 359..402 | 145 | 93.1 | Plus |
CG8922-PA | 687 | RpS5a-RA | 478..521 | 500..543 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 874 | CG7014-RA | 83..779 | 13..709 | 3470 | 99.9 | Plus |
RpS5b-RB | 951 | CG7014-RB | 83..612 | 13..542 | 2635 | 99.8 | Plus |
RpS5a-RD | 809 | CG8922-RD | 121..694 | 136..709 | 1490 | 84 | Plus |
RpS5b-RB | 951 | CG7014-RB | 687..856 | 540..709 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14900948..14901481 | 546..13 | 2640 | 99.6 | Minus |
3R | 32079331 | 3R | 14900527..14900697 | 709..539 | 855 | 100 | Minus |
X | 23542271 | X | 17146796..17147086 | 426..136 | 720 | 83.2 | Minus |
X | 23542271 | X | 17144617..17144718 | 641..540 | 300 | 86.3 | Minus |
X | 23542271 | X | 17145015..17145126 | 542..431 | 290 | 83.9 | Minus |
X | 23542271 | X | 17143703..17143773 | 709..639 | 250 | 90.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:52:25 has no hits.
BS11758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:16 Download gff for
BS11758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7014-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:10 Download gff for
BS11758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 8..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:55 Download gff for
BS11758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 79..782 | 8..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:55 Download gff for
BS11758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14900524..14900694 | 542..714 | 98 | <- | Minus |
3R | 14900953..14901485 | 8..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:10 Download gff for
BS11758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10726675..10727207 | 8..541 | 99 | | Minus |
arm_3R | 10726246..10726416 | 542..714 | 98 | <- | Minus |
BS11758.complete Sequence
725 bp assembled on 2006-11-01
GenBank Submission: FJ636961
> BS11758.complete
GAAGTTATCAGTCGACATGTCCGAGGAAGTGGTGGAGTCCAGCAGCCAGG
AGGCGAGCCAGGTTATACCGCAGGAGCAGGAGGACTGGGCTGACGATGTC
GTTACCACAATGCCGGCCCAGGAGGTCACCGAGTGGCCGGAAATCAAGCT
TTTCGGGCGCTGGGCCTGCGACGACATCTCCATCAGCGACATCTCGCTGC
AGGACTACATTGCCGTAAAGGAGAAGTTCGCCCGCTACCTGCCGCACTCC
GCCGGACGCTATGCGGCCAAGAGATTCCGCAAGGCCCAATGCCCCATCGT
GGAGCGCCTCACCAGCGGGCTGATGATGAAGGGGCGCAGCAACGGCAAGA
AGCTCCTCGCCTGCCGCATCGTCAAGCACGCCTTCGAGATCATCCATCTG
CTAACCTCGGAGAATCCGCTTCAGGTCACCGTCAACGCCATCGTCAATTC
CGGTCCGCGCGAGGACTCCACGCGAATCGGACGCGCCGGCACTGTGCGCC
GCCAGGCAGTCGATGTGTCGCCCTTGCGTCGTGTCAACCAGGCAATTTGG
CTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACATCAAGACGGT
GGCCGAGTGTCTGGCTGATGAGCTGATCAACGCCGCCAAGGGATCCTCCA
ACTCCTACGCCATCAAGAAGAAGGACGAGTTGGAGCGCGTGGCCAAGTCG
AATCGTTAAAAGCTTTCTAGACCAT
BS11758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 693 | CG7014-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
RpS5b-RB | 543 | CG7014-PB | 1..526 | 17..542 | 2630 | 100 | Plus |
RpS5a-RD | 687 | CG8922-PD | 114..687 | 136..709 | 1490 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-RA | 874 | CG7014-RA | 83..779 | 13..709 | 3470 | 99.9 | Plus |
RpS5b-RB | 951 | CG7014-RB | 83..612 | 13..542 | 2635 | 99.8 | Plus |
RpS5a-RD | 809 | CG8922-RD | 121..694 | 136..709 | 1490 | 84 | Plus |
RpS5b-RB | 951 | CG7014-RB | 687..856 | 540..709 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14900948..14901481 | 546..13 | 2640 | 99.6 | Minus |
3R | 32079331 | 3R | 14900527..14900697 | 709..539 | 855 | 100 | Minus |
X | 23542271 | X | 17146796..17147086 | 426..136 | 720 | 83.2 | Minus |
X | 23542271 | X | 17144617..17144718 | 641..540 | 300 | 86.3 | Minus |
X | 23542271 | X | 17145015..17145126 | 542..431 | 290 | 83.9 | Minus |
X | 23542271 | X | 17143703..17143773 | 709..639 | 250 | 90.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:58 has no hits.
BS11758.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:14 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:04 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 8..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:20 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 112..802 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:14 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 104..807 | 8..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:10 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS5b-RA | 87..777 | 17..707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:10 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14900529..14900694 | 542..707 | 100 | <- | Minus |
3R | 14900953..14901477 | 17..541 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:20 Download gff for
BS11758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10726251..10726416 | 542..707 | 100 | <- | Minus |
arm_3R | 10726675..10727199 | 17..541 | 100 | | Minus |
BS11758.pep Sequence
Translation from 16 to 708
> BS11758.pep
MSEEVVESSSQEASQVIPQEQEDWADDVVTTMPAQEVTEWPEIKLFGRWA
CDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTS
GLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPRED
STRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLA
DELINAAKGSSNSYAIKKKDELERVAKSNR*
BS11758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS5b-PA | 230 | CG7014-PA | 1..230 | 1..230 | 1168 | 100 | Plus |
RpS5a-PD | 228 | CG8922-PD | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PC | 228 | CG8922-PC | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PB | 228 | CG8922-PB | 4..228 | 1..230 | 929 | 79.1 | Plus |
RpS5a-PA | 228 | CG8922-PA | 4..228 | 1..230 | 929 | 79.1 | Plus |