Clone BS11759 Report

Search the DGRC for BS11759

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptRab9-RA
Protein status:BS11759.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11759.3prime Sequence

801 bp (754 high quality bases) assembled on 2006-06-16

> BS11759.3prime
ATGGTCTAGAAAGCTTTCATAGCCGATAATTGGTGGCTGGCGCCTTGCTG
GCGTTGCGCTTCTGGCCGAACACTTTCTTGCCCGGACTGTGCATGGCGGC
ATCATCGCCATCCGCGTCCTGCCCTACGCCGCCGCCACCGCCTCCTCCGC
CTGTGCAACAGATGCGCCGCTGCACCAGGCGAATGGGGCGGGTGAGGTCA
ATGGTGTCGCCGTGCTGGCGCAGTTCCGCCTCGGCCACGCACTCCATGTG
CCGCCACTGGCGAAGGCCAAGGACGAACGCATCCGTCACATTGGTTGCCG
CCTTCGATGACGTCTCGATGTGGCAGGCCACCTTCTGCTCCGCGCACCAC
TGCTGCACTGCGTCGGAGCTCACCTGTCGCTTCTGCGCCGGAATGTCGTT
CTTATTTCCCACCACGATGAATGGAAACTTGTCCTGGTCCACATCTGCGT
AGTTGAGGAACTCATTGCGCCACACACCCAATCCCTTCAAGCTGTCCCGG
TCGTCGAGTGCGTAGCAGAGCAGACAGATGTCCGATCCTCTGTAGAACGG
GGTGCGTAGAGCCCGGAATCGCTCCTGGCCAGCGGTGTCCCATATCTGCA
GAGTGTAGCGCTCCCCGTCGACGACTATGTCCTTGTTCATGAACTCCACG
CCGATGGTGTGGAAGTTGTTCTCCTCGTAGCGATTGGCGACGAATCGGGT
GAGCAGGGCGGACTTGCCAACGCCTCCGTCGCCCAGTATGACGACCTTCA
GCAGCTTGGACTTCTGCGGCGGCCGCATGTTCGTCATGTCGACTGATAAC
T

BS11759.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9994-PA 771 Rab9-RA 1..771 787..17 3830 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 1604 CG9994-RA 299..1069 787..17 3840 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19434921..19435306 402..17 1915 99.7 Minus
2L 23513712 2L 19434665..19434861 597..401 985 100 Minus
2L 23513712 2L 19432872..19433063 787..596 960 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:10:47 has no hits.

BS11759.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:16 Download gff for BS11759.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9994-PA 1..771 17..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:53 Download gff for BS11759.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 13..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:08 Download gff for BS11759.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 13..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:08 Download gff for BS11759.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19432864..19433063 596..795 98 -> Minus
2L 19434667..19434861 401..595 100 -> Minus
2L 19434923..19435308 13..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:53 Download gff for BS11759.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19432864..19433063 596..795 98 -> Minus
arm_2L 19434667..19434861 401..595 100 -> Minus
arm_2L 19434923..19435308 13..400 99   Minus

BS11759.5prime Sequence

801 bp (724 high quality bases) assembled on 2006-06-16

> BS11759.5prime
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTATGAAAGCTTTCTAGAC
C

BS11759.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9994-PA 771 Rab9-RA 1..771 17..787 3830 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 1604 CG9994-RA 299..1069 17..787 3840 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19434921..19435306 402..787 1915 99.7 Plus
2L 23513712 2L 19434665..19434861 207..403 985 100 Plus
2L 23513712 2L 19432872..19433063 17..208 960 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:08:53 has no hits.

BS11759.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:16 Download gff for BS11759.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9994-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:16 Download gff for BS11759.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 9..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:46 Download gff for BS11759.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 291..1071 9..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:46 Download gff for BS11759.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19432864..19433063 9..208 98 -> Plus
2L 19434667..19434861 209..403 100 -> Plus
2L 19434923..19435308 404..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:16 Download gff for BS11759.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19432864..19433063 9..208 98 -> Plus
arm_2L 19434667..19434861 209..403 100 -> Plus
arm_2L 19434923..19435308 404..791 99   Plus

BS11759.complete Sequence

803 bp assembled on 2006-11-01

GenBank Submission: FJ638836

> BS11759.complete
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTATGAAAGCTTTCTAGAC
CAT

BS11759.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 771 CG9994-PA 1..771 17..787 3840 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-RA 1604 CG9994-RA 299..1069 17..787 3840 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19434921..19435306 402..787 1915 99.7 Plus
2L 23513712 2L 19434665..19434861 207..403 985 100 Plus
2L 23513712 2L 19432872..19433063 17..208 960 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:27:30 has no hits.

BS11759.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:15 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:06 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 272..1052 9..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:40 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 299..1068 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:15 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 272..1052 9..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:03 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9-RA 299..1068 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:03 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19432872..19433063 17..208 100 -> Plus
2L 19434667..19434861 209..403 100 -> Plus
2L 19434923..19435305 404..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:40 Download gff for BS11759.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19432872..19433063 17..208 100 -> Plus
arm_2L 19434667..19434861 209..403 100 -> Plus
arm_2L 19434923..19435305 404..786 99   Plus

BS11759.pep Sequence

Translation from 16 to 786

> BS11759.pep
MTNMRPPQKSKLLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFM
NKDIVVDGERYTLQIWDTAGQERFRALRTPFYRGSDICLLCYALDDRDSL
KGLGVWRNEFLNYADVDQDKFPFIVVGNKNDIPAQKRQVSSDAVQQWCAE
QKVACHIETSSKAATNVTDAFVLGLRQWRHMECVAEAELRQHGDTIDLTR
PIRLVQRRICCTGGGGGGGGVGQDADGDDAAMHSPGKKVFGQKRNASKAP
ATNYRL*

BS11759.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9-PA 256 CG9994-PA 1..256 1..256 1361 100 Plus
Rab7-PC 207 CG5915-PC 4..181 8..186 382 45 Plus
Rab7-PB 207 CG5915-PB 4..181 8..186 382 45 Plus
Rab7-PA 207 CG5915-PA 4..181 8..186 382 45 Plus
Rab1-PA 205 CG3320-PA 6..166 7..172 303 39.8 Plus