Clone Sequence Records
BS11759.3prime Sequence
801 bp (754 high quality bases) assembled on 2006-06-16
> BS11759.3prime
ATGGTCTAGAAAGCTTTCATAGCCGATAATTGGTGGCTGGCGCCTTGCTG
GCGTTGCGCTTCTGGCCGAACACTTTCTTGCCCGGACTGTGCATGGCGGC
ATCATCGCCATCCGCGTCCTGCCCTACGCCGCCGCCACCGCCTCCTCCGC
CTGTGCAACAGATGCGCCGCTGCACCAGGCGAATGGGGCGGGTGAGGTCA
ATGGTGTCGCCGTGCTGGCGCAGTTCCGCCTCGGCCACGCACTCCATGTG
CCGCCACTGGCGAAGGCCAAGGACGAACGCATCCGTCACATTGGTTGCCG
CCTTCGATGACGTCTCGATGTGGCAGGCCACCTTCTGCTCCGCGCACCAC
TGCTGCACTGCGTCGGAGCTCACCTGTCGCTTCTGCGCCGGAATGTCGTT
CTTATTTCCCACCACGATGAATGGAAACTTGTCCTGGTCCACATCTGCGT
AGTTGAGGAACTCATTGCGCCACACACCCAATCCCTTCAAGCTGTCCCGG
TCGTCGAGTGCGTAGCAGAGCAGACAGATGTCCGATCCTCTGTAGAACGG
GGTGCGTAGAGCCCGGAATCGCTCCTGGCCAGCGGTGTCCCATATCTGCA
GAGTGTAGCGCTCCCCGTCGACGACTATGTCCTTGTTCATGAACTCCACG
CCGATGGTGTGGAAGTTGTTCTCCTCGTAGCGATTGGCGACGAATCGGGT
GAGCAGGGCGGACTTGCCAACGCCTCCGTCGCCCAGTATGACGACCTTCA
GCAGCTTGGACTTCTGCGGCGGCCGCATGTTCGTCATGTCGACTGATAAC
T
BS11759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9994-PA | 771 | Rab9-RA | 1..771 | 787..17 | 3830 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 1604 | CG9994-RA | 299..1069 | 787..17 | 3840 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19434921..19435306 | 402..17 | 1915 | 99.7 | Minus |
2L | 23513712 | 2L | 19434665..19434861 | 597..401 | 985 | 100 | Minus |
2L | 23513712 | 2L | 19432872..19433063 | 787..596 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:10:47 has no hits.
BS11759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:16 Download gff for
BS11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9994-PA | 1..771 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:53 Download gff for
BS11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 13..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:08 Download gff for
BS11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 13..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:08 Download gff for
BS11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19432864..19433063 | 596..795 | 98 | -> | Minus |
2L | 19434667..19434861 | 401..595 | 100 | -> | Minus |
2L | 19434923..19435308 | 13..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:53 Download gff for
BS11759.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19432864..19433063 | 596..795 | 98 | -> | Minus |
arm_2L | 19434667..19434861 | 401..595 | 100 | -> | Minus |
arm_2L | 19434923..19435308 | 13..400 | 99 | | Minus |
BS11759.5prime Sequence
801 bp (724 high quality bases) assembled on 2006-06-16
> BS11759.5prime
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTATGAAAGCTTTCTAGAC
C
BS11759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9994-PA | 771 | Rab9-RA | 1..771 | 17..787 | 3830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 1604 | CG9994-RA | 299..1069 | 17..787 | 3840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19434921..19435306 | 402..787 | 1915 | 99.7 | Plus |
2L | 23513712 | 2L | 19434665..19434861 | 207..403 | 985 | 100 | Plus |
2L | 23513712 | 2L | 19432872..19433063 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:08:53 has no hits.
BS11759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:16 Download gff for
BS11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9994-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:16 Download gff for
BS11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:46 Download gff for
BS11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 291..1071 | 9..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:46 Download gff for
BS11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19432864..19433063 | 9..208 | 98 | -> | Plus |
2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
2L | 19434923..19435308 | 404..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:16 Download gff for
BS11759.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19432864..19433063 | 9..208 | 98 | -> | Plus |
arm_2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
arm_2L | 19434923..19435308 | 404..791 | 99 | | Plus |
BS11759.complete Sequence
803 bp assembled on 2006-11-01
GenBank Submission: FJ638836
> BS11759.complete
GAAGTTATCAGTCGACATGACGAACATGCGGCCGCCGCAGAAGTCCAAGC
TGCTGAAGGTCGTCATACTGGGCGACGGAGGCGTTGGCAAGTCCGCCCTG
CTCACCCGATTCGTCGCCAATCGCTACGAGGAGAACAACTTCCACACCAT
CGGCGTGGAGTTCATGAACAAGGACATAGTCGTCGACGGGGAGCGCTACA
CTCTGCAGATATGGGACACCGCTGGCCAGGAGCGATTCCGGGCTCTACGC
ACCCCGTTCTACAGAGGATCGGACATCTGTCTGCTCTGCTACGCACTCGA
CGACCGGGACAGCTTGAAGGGATTGGGTGTGTGGCGCAATGAGTTCCTCA
ACTACGCAGATGTGGACCAGGACAAGTTTCCATTCATCGTGGTGGGAAAT
AAGAACGACATTCCGGCGCAGAAGCGACAGGTGAGCTCCGACGCAGTGCA
GCAGTGGTGCGCGGAGCAGAAGGTGGCCTGCCACATCGAGACGTCATCGA
AGGCGGCAACCAATGTGACGGATGCGTTCGTCCTTGGCCTTCGCCAGTGG
CGGCACATGGAGTGCGTGGCCGAGGCGGAACTGCGCCAGCACGGCGACAC
CATTGACCTCACCCGCCCCATTCGCCTGGTGCAGCGGCGCATCTGTTGCA
CAGGCGGAGGAGGCGGTGGCGGCGGCGTAGGGCAGGACGCGGATGGCGAT
GATGCCGCCATGCACAGTCCGGGCAAGAAAGTGTTCGGCCAGAAGCGCAA
CGCCAGCAAGGCGCCAGCCACCAATTATCGGCTATGAAAGCTTTCTAGAC
CAT
BS11759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 771 | CG9994-PA | 1..771 | 17..787 | 3840 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-RA | 1604 | CG9994-RA | 299..1069 | 17..787 | 3840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19434921..19435306 | 402..787 | 1915 | 99.7 | Plus |
2L | 23513712 | 2L | 19434665..19434861 | 207..403 | 985 | 100 | Plus |
2L | 23513712 | 2L | 19432872..19433063 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:30 has no hits.
BS11759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:15 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:24:06 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 272..1052 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:40 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 299..1068 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:15 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 272..1052 | 9..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:03 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9-RA | 299..1068 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:03 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19432872..19433063 | 17..208 | 100 | -> | Plus |
2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
2L | 19434923..19435305 | 404..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:40 Download gff for
BS11759.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19432872..19433063 | 17..208 | 100 | -> | Plus |
arm_2L | 19434667..19434861 | 209..403 | 100 | -> | Plus |
arm_2L | 19434923..19435305 | 404..786 | 99 | | Plus |
BS11759.pep Sequence
Translation from 16 to 786
> BS11759.pep
MTNMRPPQKSKLLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFM
NKDIVVDGERYTLQIWDTAGQERFRALRTPFYRGSDICLLCYALDDRDSL
KGLGVWRNEFLNYADVDQDKFPFIVVGNKNDIPAQKRQVSSDAVQQWCAE
QKVACHIETSSKAATNVTDAFVLGLRQWRHMECVAEAELRQHGDTIDLTR
PIRLVQRRICCTGGGGGGGGVGQDADGDDAAMHSPGKKVFGQKRNASKAP
ATNYRL*
BS11759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9-PA | 256 | CG9994-PA | 1..256 | 1..256 | 1361 | 100 | Plus |
Rab7-PC | 207 | CG5915-PC | 4..181 | 8..186 | 382 | 45 | Plus |
Rab7-PB | 207 | CG5915-PB | 4..181 | 8..186 | 382 | 45 | Plus |
Rab7-PA | 207 | CG5915-PA | 4..181 | 8..186 | 382 | 45 | Plus |
Rab1-PA | 205 | CG3320-PA | 6..166 | 7..172 | 303 | 39.8 | Plus |