BS11766.complete Sequence
1142 bp assembled on 2006-11-01
GenBank Submission: FJ636963
> BS11766.complete
GAAGTTATCAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCA
CGTTCCACTGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGG
GCCCGACCGCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTA
CTGGACGCGCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCA
AGATCAACACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCC
AGCATGTTCTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCT
CGGTCACCTTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCT
CCGCACTAGTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCAC
AGGGACTTTCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGA
GGCAGAGGATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGT
TGGAGCGGGCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAAT
GATGAGGACGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCAT
TCCGGATGCGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATG
AACTAGCCCCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAG
CAGCCGGCCAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAA
GCGTGACTCGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAA
AGGGGCTGCAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCCT
CAGTTGCGTCAGATAACCGCTGGCCCGGATCCCGCCGGCGAGCTTGTAGC
CCTGGCCGTGAAAACGCAGGCTCAGGCGCTCCTGGCAAACAGCGGGAAGC
TCCTGCCCAGCCTTGTTACCGGCCTGGTGCAATGGGGAGCAGGTGGTGCT
GCTGCAGCCGGTGCCAGCGATTGCACGGATTCAAATCGAGATCGTGACCA
GCAGCGCATTGTCACCGCCCTGGATTCGTCGGACGAGAGCGATTTTGAGA
TACTCGAATCGGATGACTTTAAGTAAAAGCTTTCTAGACCAT
BS11766.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12576-RE | 1110 | CG12576-PE | 1..1110 | 17..1126 | 5550 | 100 | Plus |
| CG12576-RF | 1110 | CG12576-PF | 1..1110 | 17..1126 | 5550 | 100 | Plus |
| CG12576-RA | 1110 | CG12576-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12576-RE | 2404 | CG12576-RE | 415..1525 | 17..1127 | 5555 | 100 | Plus |
| CG12576-RF | 2547 | CG12576-RF | 558..1668 | 17..1127 | 5555 | 100 | Plus |
| CG12576-RA | 2407 | CG12576-RA | 418..1528 | 17..1127 | 5555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22475730..22476453 | 1127..404 | 3620 | 100 | Minus |
| X | 23542271 | X | 22477179..22477484 | 404..99 | 1530 | 100 | Minus |
| X | 23542271 | X | 22480511..22480594 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:56:55 has no hits.
BS11766.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:02 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 1..1110 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:47 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 470..1592 | 9..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:35 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 423..1525 | 22..1124 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:02 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 470..1592 | 9..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:24 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 423..1525 | 22..1124 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:24 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22475733..22476452 | 405..1124 | 100 | <- | Minus |
| X | 22477179..22477483 | 100..404 | 100 | <- | Minus |
| X | 22480512..22480589 | 22..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:35 Download gff for
BS11766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21877569..21878288 | 405..1124 | 100 | <- | Minus |
| arm_X | 21879015..21879319 | 100..404 | 100 | <- | Minus |
| arm_X | 21882348..21882425 | 22..99 | 100 | | Minus |
BS11766.pep Sequence
Translation from 16 to 1125
> BS11766.pep
MFQVLPRPSRSTFHCIAAAVVTVVLMSWARPLGVLFLGLLGYWIYWTRCS
FRVVPTDELRGKINTWLQRIDDWRHRSPSMFCLASSGCLGTLAVLGHLIS
GSTLVLTILVVSALVSTKYTFKLLKIEHRDFQWSEKLNYNNLEAEAEDEF
LPDVNESNLFVLERASDVATISSPTDANDEDDDDRSDDVPSELLIPDAIP
EIDEQSTDEDDELAPLAPKRQEKLQPQEQPAKESEDMNFRKSHFKRDSSL
STSSSSEESLSKGLQFPDHTTVDATGNPQLRQITAGPDPAGELVALAVKT
QAQALLANSGKLLPSLVTGLVQWGAGGAAAAGASDCTDSNRDRDQQRIVT
ALDSSDESDFEILESDDFK*
BS11766.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12576-PE | 369 | CG12576-PE | 1..369 | 1..369 | 1897 | 100 | Plus |
| CG12576-PF | 369 | CG12576-PF | 1..369 | 1..369 | 1897 | 100 | Plus |
| CG12576-PA | 369 | CG12576-PA | 1..369 | 1..369 | 1897 | 100 | Plus |
| CG12576-PB | 290 | CG12576-PB | 1..290 | 80..369 | 1463 | 100 | Plus |
