BS11768.complete Sequence
1823 bp assembled on 2009-12-07
GenBank Submission: KX805674
> BS11768.complete
GAAGTTATCAGTCGACATGTTGGGCAACAGTTGGCCCGGTTGCAAGCGGG
CTCCTCGCATGGTGCTCAAACATGTGAGGCGGCAGCACGAGGAGTTGCGG
GAGCAGCTGGAGCAGGGATGCGACGATCTCATGGAGGTGGCCGAGTCTTA
TTTTCCGGATGTCTTGCAGCATTTCCAGCGCAACTCGAAACTGGCTGAGT
CATCGAAGCGATTGAAGTCACAGATCTGGAGCTCAGTGGTTACCATATTG
CTGGTTAAAGCCAAGGATTTGCCCTTAGCTGAAGATGGCAGCAAGCTGAA
TGATACTCACTTCAAATTCAGATTGGGCAATGAGAAGTACAAGAGCAAGT
CTTCCTGGACGGAACGCTGGCTGGAGCAGTTCGACTTGCACCTGTTTGAT
GAAGATCAAAACCTGGAGATCGCACTTTGGAACCGGAACACCCTCTATGG
CAAAGCCATTATTGACCTCAGCGTTTTTCAGCGCGAAAACACGCATGGCA
TTTGGAAACCTCTGGAAGATTGCCCTGGTGAGGTCCACCTTATGCTCACT
ATAAGTGGAACCACTGCCTTGGAGACGATCAGCGATCTGAAGGCCTTCAA
GGAGGATCCTCGAGAGGCTCAATTGCTAAGGGAAAGATATAAATTCCTAA
GATGCCTCCAAAACCTCCGCGATGTGGGTCACCTAACTGTAAAGGTCTTT
GGAGCCACTGGACTGGCTGCAGCGGATATAGGTGGAAAATCCGATCCTTT
TTGTGTATTGGAACTGGGTAACGCCCGACTGCAAACCCAAACTGAGTATA
AAACACTCACTCCTAATTGGAATAAGATATTTACTTTCAATGTTAAAGAC
ATCACGCAGGTCCTGGAGATCACCGTTTTCGATGAGGATCGCGACCATCG
CGTAGAGTTCCTGGGCAAGCTAGTCATTCCCCTCCTAAGGATCAAAAGTG
GAGTCAAGCGATGGTATACGCTGAAGGACAAGAATCTCTGTGTGCGGGCC
AAAGGAAACTCACCGCAAATTCAGCTGGAACTGACGGTAGTCTGGAGCGA
GATCCGTGCCGTGTGTCGAGCCCTGCAGCCCAAGGAGGAAAAGCTCATCC
AGCAGGAGGCCAAGTTCAAGCGACAGCTCTTCCTGCGCAACGTCAATAGA
CTCAAGGAGATAATCATGGATATCCTAGATGCAGCGCGCTATGTCCAGAG
CTGTTTCGAGTGGGAATCTCCTGTGCGATCCAGCATAGCTTTCGTCTTTT
GGATAGTCGCCTGTGTCTACGGCGATCTGGAGACAGTACCTCTAGTTCTA
CTGCTCATCATACTTAAAAACTGGCTGGTTCGCCTTATAACGGGCACCAC
AGATGCAGCTGCTCACTACGACTATGAGTACGATGAAGATGATGATGATG
ACAAGGAGAAGGAGGAAAAGAAGTCCATCAAGGAGAGATTACAGGCCATT
CAAGAAGTCTCCCAAACGGTACAGAATACCATCGGCTACCTGGCTTCTTT
AGGCGAGAGCACCATTAACACATTCAACTTTTCCGTCCCCGAACTGACCT
GGCTGGCTGTGGTTTTGCTATTGGGCGCCATTCTGGTCTTGCATTTTGTC
CCGCTCCGCTGGCTGCTGCTCTTTTGGGGCCTGATGAAGTTCTCCAGACG
TTTGCTGAGACCCAATACCATTCCCAACAACGAGCTATTGGACTTCCTCT
CGCGAGTGCCAGATAATGAGGAGATTAATCAATATCGAGAGCTGCCACCA
TCGGCACCCACCGATCAGACGCGCAACAATCCCAAGAAGAAACTGAAAGG
ATCATAGAAGCTTTCTAGACCAT
BS11768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mctp-RB | 1791 | CG15078-PB | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| Mctp-RG | 2739 | CG15078-PG | 1101..2739 | 169..1807 | 8195 | 100 | Plus |
| Mctp-RF | 2682 | CG15078-PF | 1044..2682 | 169..1807 | 8195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mctp-RB | 2824 | CG15078-RB | 109..1900 | 16..1807 | 8960 | 100 | Plus |
| Mctp-RG | 4123 | CG15078-RG | 1561..3199 | 169..1807 | 8195 | 100 | Plus |
| Mctp-RF | 4223 | CG15078-RF | 1504..3142 | 169..1807 | 8195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18771950..18772470 | 317..837 | 2605 | 100 | Plus |
| 2R | 25286936 | 2R | 18772539..18772899 | 838..1198 | 1805 | 100 | Plus |
| 2R | 25286936 | 2R | 18771586..18771891 | 16..321 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 18773398..18773605 | 1519..1726 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 18773131..18773335 | 1314..1518 | 1010 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18772958..18773077 | 1198..1317 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 18773663..18773743 | 1727..1807 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 1756..1796 | 246..286 | 115 | 75.6 | Plus |
BS11768.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:14 Download gff for
BS11768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mctp-RB | 104..1889 | 22..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:17 Download gff for
BS11768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mctp-RB | 115..1900 | 22..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:10 Download gff for
BS11768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mctp-RB | 104..1889 | 22..1807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:07 Download gff for
BS11768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mctp-RB | 115..1900 | 22..1807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:07 Download gff for
BS11768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18771592..18771891 | 22..321 | 100 | -> | Plus |
| 2R | 18771955..18772470 | 322..837 | 100 | -> | Plus |
| 2R | 18772539..18772898 | 838..1197 | 100 | -> | Plus |
| 2R | 18772958..18773077 | 1198..1317 | 100 | -> | Plus |
| 2R | 18773135..18773335 | 1318..1518 | 100 | -> | Plus |
| 2R | 18773398..18773605 | 1519..1726 | 100 | -> | Plus |
| 2R | 18773663..18773743 | 1727..1807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:17 Download gff for
BS11768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14659097..14659396 | 22..321 | 100 | -> | Plus |
| arm_2R | 14659460..14659975 | 322..837 | 100 | -> | Plus |
| arm_2R | 14660044..14660403 | 838..1197 | 100 | -> | Plus |
| arm_2R | 14660463..14660582 | 1198..1317 | 100 | -> | Plus |
| arm_2R | 14660640..14660840 | 1318..1518 | 100 | -> | Plus |
| arm_2R | 14660903..14661110 | 1519..1726 | 100 | -> | Plus |
| arm_2R | 14661168..14661248 | 1727..1807 | 100 | | Plus |
BS11768.pep Sequence
Translation from 16 to 1806
> BS11768.pep
MLGNSWPGCKRAPRMVLKHVRRQHEELREQLEQGCDDLMEVAESYFPDVL
QHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFK
FRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIID
LSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPRE
AQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLEL
GNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLG
KLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVC
RALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWE
SPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAH
YDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTI
NTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPN
TIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGS*
BS11768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mctp-PB | 596 | CG15078-PB | 1..596 | 1..596 | 3108 | 100 | Plus |
| Mctp-PG | 912 | CG15078-PG | 364..912 | 48..596 | 2832 | 99.5 | Plus |
| Mctp-PF | 893 | CG15078-PF | 345..893 | 48..596 | 2832 | 99.5 | Plus |
| Mctp-PE | 954 | CG15078-PE | 406..954 | 48..596 | 2832 | 99.5 | Plus |
| Mctp-PD | 982 | CG15078-PD | 364..912 | 48..596 | 2832 | 99.5 | Plus |
