Clone Sequence Records
BS11771.3prime Sequence
561 bp (561 high quality bases) assembled on 2006-06-16
> BS11771.3prime
ATGGTCTAGAAAGCTTTTACTCTTGATCGTCAGAAGATTCAGGTGAACTC
CCGGCTCGTTTTTTCTTTTTTTGTGGAGCTCCCTGCTTTTGATCCTCGCT
GCTGTCGCTGTCCGAGCCACTTCCACTGGAGTCTGACGAGCTGCCTTCCT
CGTCGTCCGAATCCGAACTGGAGCTGCTCGAGTCTGATTCGGATGAGGAG
CCCGATTCGCTGCTGCTGTCTGAGCTGTCCGACGAGCTGGAGGAGGACGA
GGAGCTCTTGCTCGTTTTCCGCTTTCGACGGACCTTCTTTCCTTCCGAGG
AAGCCACTTCCGAGTGCTCCTCCACCTGGTTCTTGGGTGCGTCAGCCTCC
TTTTGGGACATACGCTTGCTTAGCTGCTTGGTACGCGAGCTCCGGTGGAC
GTATTTGCGCTTCTCCTTGCACTCATAGCTCCAGTGTCCGATCTGCAGGC
ACTTCTGGCACCGGATGCCATTGGGAAAGTCTGCTGCTTGCTTTGCGGAT
CTCTTCTTTTGCGCTAATTTGCGGGCAGCTAGGCCCACCAAAGTCATGTC
GACTGATAACT
BS11771.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PA | 531 | CG5516-RA | 1..531 | 547..17 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 733 | CG5516-RB | 90..620 | 547..17 | 2655 | 100 | Minus |
CG5516-RA | 811 | CG5516-RA | 168..698 | 547..17 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964648 | 502..17 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 15964051..15964097 | 547..501 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:56:21 has no hits.
BS11771.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:18 Download gff for
BS11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-PA | 1..531 | 17..547 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:09 Download gff for
BS11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 165..700 | 17..556 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:21 Download gff for
BS11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 163..698 | 17..556 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:21 Download gff for
BS11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15964046..15964097 | 501..556 | 92 | -> | Minus |
3R | 15964165..15964648 | 17..500 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:09 Download gff for
BS11771.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789768..11789819 | 501..556 | 92 | -> | Minus |
arm_3R | 11789887..11790370 | 17..500 | 100 | | Minus |
BS11771.5prime Sequence
561 bp (561 high quality bases) assembled on 2006-06-16
> BS11771.5prime
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGTAAAAG
CTTTCTAGACC
BS11771.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PA | 531 | CG5516-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 733 | CG5516-RB | 90..620 | 17..547 | 2655 | 100 | Plus |
CG5516-RA | 811 | CG5516-RA | 168..698 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964648 | 62..547 | 2430 | 100 | Plus |
3R | 32079331 | 3R | 15964051..15964097 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:37:19 has no hits.
BS11771.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:19 Download gff for
BS11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:02 Download gff for
BS11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 165..700 | 8..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:37 Download gff for
BS11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 163..698 | 8..547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:37 Download gff for
BS11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15964046..15964097 | 8..63 | 92 | -> | Plus |
3R | 15964165..15964648 | 64..547 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:02 Download gff for
BS11771.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789768..11789819 | 8..63 | 92 | -> | Plus |
arm_3R | 11789887..11790370 | 64..547 | 100 | | Plus |
BS11771.complete Sequence
563 bp assembled on 2006-11-01
GenBank Submission: FJ636964
> BS11771.complete
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGTAAAAG
CTTTCTAGACCAT
BS11771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 531 | CG5516-PB | 1..531 | 17..547 | 2655 | 100 | Plus |
CG5516-RA | 531 | CG5516-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-RB | 733 | CG5516-RB | 90..620 | 17..547 | 2655 | 100 | Plus |
CG5516-RA | 811 | CG5516-RA | 168..698 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15964163..15964648 | 62..547 | 2430 | 100 | Plus |
3R | 32079331 | 3R | 15964051..15964097 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:58:25 has no hits.
BS11771.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:25 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:37 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 159..694 | 8..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:30 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 170..698 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:25 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 159..694 | 8..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:02 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5516-RA | 168..696 | 17..545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:02 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15964051..15964097 | 17..63 | 100 | -> | Plus |
3R | 15964165..15964646 | 64..545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:30 Download gff for
BS11771.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11789773..11789819 | 17..63 | 100 | -> | Plus |
arm_3R | 11789887..11790368 | 64..545 | 100 | | Plus |
BS11771.pep Sequence
Translation from 16 to 546
> BS11771.pep
MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYV
HRSSRTKQLSKRMSQKEADAPKNQVEEHSEVASSEGKKVRRKRKTSKSSS
SSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSDSDSS
EDQKQGAPQKKKKRAGSSPESSDDQE*
BS11771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5516-PB | 176 | CG5516-PB | 1..176 | 1..176 | 873 | 100 | Plus |
CG5516-PA | 176 | CG5516-PA | 1..176 | 1..176 | 873 | 100 | Plus |
CG3918-PA | 321 | CG3918-PA | 145..281 | 44..174 | 179 | 36 | Plus |
PNUTS-PA | 628 | CG33526-PA | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PB | 628 | CG33526-PB | 282..415 | 51..172 | 161 | 36.5 | Plus |
PNUTS-PA | 628 | CG33526-PA | 327..448 | 52..172 | 157 | 36.6 | Plus |
PNUTS-PA | 628 | CG33526-PA | 279..392 | 60..172 | 154 | 37.7 | Plus |
PNUTS-PA | 628 | CG33526-PA | 281..422 | 44..176 | 152 | 31.7 | Plus |