Clone BS11771 Report

Search the DGRC for BS11771

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:117
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5516-RA
Protein status:BS11771.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS11771.3prime Sequence

561 bp (561 high quality bases) assembled on 2006-06-16

> BS11771.3prime
ATGGTCTAGAAAGCTTTTACTCTTGATCGTCAGAAGATTCAGGTGAACTC
CCGGCTCGTTTTTTCTTTTTTTGTGGAGCTCCCTGCTTTTGATCCTCGCT
GCTGTCGCTGTCCGAGCCACTTCCACTGGAGTCTGACGAGCTGCCTTCCT
CGTCGTCCGAATCCGAACTGGAGCTGCTCGAGTCTGATTCGGATGAGGAG
CCCGATTCGCTGCTGCTGTCTGAGCTGTCCGACGAGCTGGAGGAGGACGA
GGAGCTCTTGCTCGTTTTCCGCTTTCGACGGACCTTCTTTCCTTCCGAGG
AAGCCACTTCCGAGTGCTCCTCCACCTGGTTCTTGGGTGCGTCAGCCTCC
TTTTGGGACATACGCTTGCTTAGCTGCTTGGTACGCGAGCTCCGGTGGAC
GTATTTGCGCTTCTCCTTGCACTCATAGCTCCAGTGTCCGATCTGCAGGC
ACTTCTGGCACCGGATGCCATTGGGAAAGTCTGCTGCTTGCTTTGCGGAT
CTCTTCTTTTGCGCTAATTTGCGGGCAGCTAGGCCCACCAAAGTCATGTC
GACTGATAACT

BS11771.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-PA 531 CG5516-RA 1..531 547..17 2655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 733 CG5516-RB 90..620 547..17 2655 100 Minus
CG5516-RA 811 CG5516-RA 168..698 547..17 2655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964163..15964648 502..17 2430 100 Minus
3R 32079331 3R 15964051..15964097 547..501 235 100 Minus
Blast to na_te.dros performed on 2015-01-30 16:56:21 has no hits.

BS11771.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:18 Download gff for BS11771.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-PA 1..531 17..547 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:09 Download gff for BS11771.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 165..700 17..556 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:21 Download gff for BS11771.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 163..698 17..556 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:21 Download gff for BS11771.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15964046..15964097 501..556 92 -> Minus
3R 15964165..15964648 17..500 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:09 Download gff for BS11771.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11789768..11789819 501..556 92 -> Minus
arm_3R 11789887..11790370 17..500 100   Minus

BS11771.5prime Sequence

561 bp (561 high quality bases) assembled on 2006-06-16

> BS11771.5prime
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGTAAAAG
CTTTCTAGACC

BS11771.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-PA 531 CG5516-RA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 733 CG5516-RB 90..620 17..547 2655 100 Plus
CG5516-RA 811 CG5516-RA 168..698 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964163..15964648 62..547 2430 100 Plus
3R 32079331 3R 15964051..15964097 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:37:19 has no hits.

BS11771.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:29:19 Download gff for BS11771.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-PA 1..531 17..547 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:02 Download gff for BS11771.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 165..700 8..547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:37 Download gff for BS11771.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 163..698 8..547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:37 Download gff for BS11771.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15964046..15964097 8..63 92 -> Plus
3R 15964165..15964648 64..547 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:02 Download gff for BS11771.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11789768..11789819 8..63 92 -> Plus
arm_3R 11789887..11790370 64..547 100   Plus

BS11771.complete Sequence

563 bp assembled on 2006-11-01

GenBank Submission: FJ636964

> BS11771.complete
GAAGTTATCAGTCGACATGACTTTGGTGGGCCTAGCTGCCCGCAAATTAG
CGCAAAAGAAGAGATCCGCAAAGCAAGCAGCAGACTTTCCCAATGGCATC
CGGTGCCAGAAGTGCCTGCAGATCGGACACTGGAGCTATGAGTGCAAGGA
GAAGCGCAAATACGTCCACCGGAGCTCGCGTACCAAGCAGCTAAGCAAGC
GTATGTCCCAAAAGGAGGCTGACGCACCCAAGAACCAGGTGGAGGAGCAC
TCGGAAGTGGCTTCCTCGGAAGGAAAGAAGGTCCGTCGAAAGCGGAAAAC
GAGCAAGAGCTCCTCGTCCTCCTCCAGCTCGTCGGACAGCTCAGACAGCA
GCAGCGAATCGGGCTCCTCATCCGAATCAGACTCGAGCAGCTCCAGTTCG
GATTCGGACGACGAGGAAGGCAGCTCGTCAGACTCCAGTGGAAGTGGCTC
GGACAGCGACAGCAGCGAGGATCAAAAGCAGGGAGCTCCACAAAAAAAGA
AAAAACGAGCCGGGAGTTCACCTGAATCTTCTGACGATCAAGAGTAAAAG
CTTTCTAGACCAT

BS11771.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 531 CG5516-PB 1..531 17..547 2655 100 Plus
CG5516-RA 531 CG5516-PA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-RB 733 CG5516-RB 90..620 17..547 2655 100 Plus
CG5516-RA 811 CG5516-RA 168..698 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15964163..15964648 62..547 2430 100 Plus
3R 32079331 3R 15964051..15964097 17..63 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:58:25 has no hits.

BS11771.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:25 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 1..531 17..547 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:37 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 159..694 8..547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:30 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 170..698 17..545 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:25 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 159..694 8..547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:02 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
CG5516-RA 168..696 17..545 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:02 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15964051..15964097 17..63 100 -> Plus
3R 15964165..15964646 64..545 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:30 Download gff for BS11771.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11789773..11789819 17..63 100 -> Plus
arm_3R 11789887..11790368 64..545 100   Plus

BS11771.pep Sequence

Translation from 16 to 546

> BS11771.pep
MTLVGLAARKLAQKKRSAKQAADFPNGIRCQKCLQIGHWSYECKEKRKYV
HRSSRTKQLSKRMSQKEADAPKNQVEEHSEVASSEGKKVRRKRKTSKSSS
SSSSSSDSSDSSSESGSSSESDSSSSSSDSDDEEGSSSDSSGSGSDSDSS
EDQKQGAPQKKKKRAGSSPESSDDQE*

BS11771.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5516-PB 176 CG5516-PB 1..176 1..176 873 100 Plus
CG5516-PA 176 CG5516-PA 1..176 1..176 873 100 Plus
CG3918-PA 321 CG3918-PA 145..281 44..174 179 36 Plus
PNUTS-PA 628 CG33526-PA 282..415 51..172 161 36.5 Plus
PNUTS-PB 628 CG33526-PB 282..415 51..172 161 36.5 Plus
PNUTS-PA 628 CG33526-PA 327..448 52..172 157 36.6 Plus
PNUTS-PA 628 CG33526-PA 279..392 60..172 154 37.7 Plus
PNUTS-PA 628 CG33526-PA 281..422 44..176 152 31.7 Plus