BS11772.complete Sequence
1580 bp assembled on 2006-11-01
GenBank Submission: FJ636965
> BS11772.complete
GAAGTTATCAGTCGACATGTTGCGGTACAGACAAGTGGTGGGTCTCCTTC
AGCGCCGTAATTTCTCGGCCGGAGCAACGAGCAATGGAAGTGGATCTTCC
GGGGGCGACAAATCCGGCGAAGACCTGCACCCCATACGACGAACACTCCG
TTTGCTCGGGAACGATATGCGCAAAGTTAAGGAGTTCTTTGTACCAAAGG
AACCGGAGACCGAGAAAGTTCCCATTCCGACACAGAGCCAGTTTCACTTT
TCAGGGGAGCGCGACAAGAGCAAGGAAGCCACTGTGCCGGATGACTTCCA
GACCCATTGCGATGTGCTCATCATTGGCGGCGGTGGAGTGGGCAGCTCCA
TCGCCTATTGGCTGAAGGAGAAGGCCCGCGACGGTCTTAACGTTGTGGTG
GTCGAGAAGGATGACACGTATGCCCAGTCAGCCACGCGTGTTTCGGTGGG
CGGTCTTTGTCAGCAATTCTCCCTGCCCGAAAACATCCAAATGTCACTAT
TTGCCGCAGACTTCCTGCGAAGCGCAAGAAAACACTTTGGCGAGGAAGTG
CCTCTCCAGTTTACGCCCCATGGCCATCTGATGCTCGCTGGCGAGGAGCA
CGCGGAAAGCCTGAAGCGCTCCTCTCAGCTACAAAACGAACTGGGTGCCC
GAAATGAACTTCTCACTGCAGATCGACTGACTGCCAGATTCCCCTGGCTA
AACACCAAGGGCATCGCTTTGGGCTGTCTTGGTCTGGAAAAAGAGGGCTG
GTTTAATCCGTTGGCACTTCTGAGCAATTTCCGACGGTCAGCCAGTGGCT
ACGGCGCCCATTTTATCAGTGGCCAGGTGGTCGACTTCGAGTTCAAATCC
CAAACGGACATTTCTGTTGTCACAGATCTTGGTTCCAACGAGGGTGCCTA
CACGGGCTTGGAAAAAGCGGTCATCCAACTGCCCGATGGTACGCGACGCA
CTTGCAAGTTCGCCCTGTGTGTAATAAGCGCCGGTGCTAGTTCCGAACAA
ATCGCGCGATTAGCAAGGATAGGCGTGGGTCCAGGAATACTTCGGGTTCC
GCTGCCCATCAACGCACGCAAGCGATACATGTACGCCATCAACTCGCAGG
CCCAAAGTGCACCCGGAATGAATATGCCCATGACAATAGATCCGTCGGGC
ATCTTTATTCGCAGAGATGGCCTGGGCGGCAACTATATTTGCGTGCAAGA
TTCGACGGAAGAGTATAATAGCGCGATGATTGATCCGCAATATTTCGCCC
AGCACATCAGACCCCATTTGTATAATAGAATTCCCGTTCTTGGAGAAGCC
CAAGTGGTGGATAGCTGGGCGGGCTGCTATGATCATAACGTATACGACGA
GAACGGCATTTTAGGAGCTCACCCGTACTACAACAATCTGTACCTAGCCA
CCGGTTTTAGCGGACACGGAGTACAGCAATCTCTGGCCGTGGGCCGAGCC
ATATCCGAGCTGATCATGGATGGTCAGTTCAGAACCATCGACCTCTCTCG
TCTGAGCTTCGACCGGCTGATTGTTGACCAACCTATGTTCGAGTTGAATA
ATGTATTAAGCTAGAAGCTTTCTAGACCAT
BS11772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1548 | CG10655-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-RA | 1708 | CG10655-RA | 115..1664 | 17..1566 | 7750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19049887..19051035 | 1566..418 | 5745 | 100 | Minus |
| 2L | 23513712 | 2L | 19051097..19051498 | 418..17 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:17 has no hits.
BS11772.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:03 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 1..1548 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:49 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 109..1660 | 17..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:22 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 120..1662 | 22..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:03 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 109..1660 | 17..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:11 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Bb-RA | 120..1662 | 22..1564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:11 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19049889..19051034 | 419..1564 | 100 | <- | Minus |
| 2L | 19051097..19051493 | 22..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:22 Download gff for
BS11772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19049889..19051034 | 419..1564 | 100 | <- | Minus |
| arm_2L | 19051097..19051493 | 22..418 | 100 | | Minus |
BS11772.pep Sequence
Translation from 16 to 1563
> BS11772.pep
MLRYRQVVGLLQRRNFSAGATSNGSGSSGGDKSGEDLHPIRRTLRLLGND
MRKVKEFFVPKEPETEKVPIPTQSQFHFSGERDKSKEATVPDDFQTHCDV
LIIGGGGVGSSIAYWLKEKARDGLNVVVVEKDDTYAQSATRVSVGGLCQQ
FSLPENIQMSLFAADFLRSARKHFGEEVPLQFTPHGHLMLAGEEHAESLK
RSSQLQNELGARNELLTADRLTARFPWLNTKGIALGCLGLEKEGWFNPLA
LLSNFRRSASGYGAHFISGQVVDFEFKSQTDISVVTDLGSNEGAYTGLEK
AVIQLPDGTRRTCKFALCVISAGASSEQIARLARIGVGPGILRVPLPINA
RKRYMYAINSQAQSAPGMNMPMTIDPSGIFIRRDGLGGNYICVQDSTEEY
NSAMIDPQYFAQHIRPHLYNRIPVLGEAQVVDSWAGCYDHNVYDENGILG
AHPYYNNLYLATGFSGHGVQQSLAVGRAISELIMDGQFRTIDLSRLSFDR
LIVDQPMFELNNVLS*
BS11772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Bb-PA | 515 | CG10655-PA | 1..515 | 1..515 | 2679 | 100 | Plus |
| CG3270-PA | 440 | CG3270-PA | 32..440 | 98..513 | 1047 | 49.5 | Plus |
