BS11774.complete Sequence
1136 bp assembled on 2006-11-01
GenBank Submission: FJ636966
> BS11774.complete
GAAGTTATCAGTCGACATGTACGCAGCTGTTAAACCGCTCTCCAAGTATC
TGCAGTTCAAGTCGGTGCACATCTACGATGCTATTTTCACGCTGCACTCC
AAAGTCACAGTGGCCCTGCTTTTGGCCTGCACATTTTTGCTTTCCTCGAA
ACAATATTTCGGCGATCCCATCCAGTGTTTTGGGGACAAGGATATGGACT
ACGTGCACGCCTTTTGTTGGATCTACGGGGCCTATGTGAGCGACAATGTG
ACTGTGACGCCCCTAAGGAATGGAGCTGCACAGTGCCGACCAGATGCGGT
TAGTAAGGTAGTGCCCCCGGAAAATCGTAACTACATAACCTACTATCAGT
GGGTCGTGCTGGTATTGCTGCTCGAGTCGTTTGTGTTTTATATGCCAGCA
TTTCTCTGGAAGATTTGGGAGGGCGGTCGGCTGAAGCATTTGTGCGATGA
TTTCCACAAGATGGCCGTTTGCAAGGACAAGAGCAGGACCCATTTGCGCG
TACTAGTCAACTACTTCTCCAGCGATTACAAAGAGACCCACTTCCGCTAC
TTCGTTAGCTACGTCTTCTGCGAAATACTCAATTTGAGCATCAGTATTCT
AAACTTCCTTCTGTTGGACGTATTTTTCGGAGGTTTTTGGGGCCGCTACC
GTAATGCCTTGCTGTCCCTTTACAATGGCGACTATAACCAGTGGAACATT
ATAACCATGGCAGTCTTCCCCAAGTGTGCCAAGTGCGAGATGTACAAGGG
CGGCCCCAGCGGTTCTTCCAACATATACGACTACCTTTGCCTGCTGCCCC
TGAATATACTGAACGAGAAAATCTTCGCCTTCCTGTGGATATGGTTTATA
CTAGTGGCTATGCTCATTTCCCTCAAGTTTCTGTACCGCCTGGCCACCGT
TTTGTATCCCGGAATGCGTCTTCAGTTGCTTCGTGCCAGGGCACGTTTCA
TGCCCAAGAAGCACTTGCAGGTGGCATTGCGCAATTGCAGTTTTGGCGAC
TGGTTCGTGCTGATGCGCGTGGGCAACAACATCAGCCCCGAGCTATTCCG
TAAGTTGCTGGAGGAGCTGTACGAAGCTCAGTCCTTGATCAAAATACCGC
CAGGAGCGGACAAGATCTAAAAGCTTTCTAGACCAT
BS11774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zpg-RB | 1104 | CG10125-PB | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| zpg-RA | 1104 | CG10125-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| Inx6-RA | 1446 | CG17063-PA | 1..161 | 17..177 | 190 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zpg-RB | 1539 | CG10125-RB | 123..1227 | 16..1120 | 5525 | 100 | Plus |
| zpg-RA | 1455 | CG10125-RA | 123..1227 | 16..1120 | 5525 | 100 | Plus |
| Inx6-RA | 1875 | CG17063-RA | 270..430 | 17..177 | 190 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6604678..6605202 | 1120..596 | 2625 | 100 | Minus |
| 3L | 28110227 | 3L | 6605275..6605579 | 595..291 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 6605633..6605910 | 293..16 | 1390 | 100 | Minus |
| X | 23542271 | X | 20269340..20269500 | 177..17 | 190 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:49:28 has no hits.
BS11774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:49:04 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 1..1104 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:23:50 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 120..1229 | 16..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:05 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 124..1225 | 17..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:49:04 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 120..1229 | 16..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:24 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zpg-RA | 124..1225 | 17..1118 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:24 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6604680..6605202 | 596..1118 | 100 | <- | Minus |
| 3L | 6605275..6605576 | 294..595 | 100 | <- | Minus |
| 3L | 6605633..6605909 | 17..293 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:05 Download gff for
BS11774.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6597780..6598302 | 596..1118 | 100 | <- | Minus |
| arm_3L | 6598375..6598676 | 294..595 | 100 | <- | Minus |
| arm_3L | 6598733..6599009 | 17..293 | 100 | | Minus |
BS11774.pep Sequence
Translation from 16 to 1119
> BS11774.pep
MYAAVKPLSKYLQFKSVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGD
PIQCFGDKDMDYVHAFCWIYGAYVSDNVTVTPLRNGAAQCRPDAVSKVVP
PENRNYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDDFHKMA
VCKDKSRTHLRVLVNYFSSDYKETHFRYFVSYVFCEILNLSISILNFLLL
DVFFGGFWGRYRNALLSLYNGDYNQWNIITMAVFPKCAKCEMYKGGPSGS
SNIYDYLCLLPLNILNEKIFAFLWIWFILVAMLISLKFLYRLATVLYPGM
RLQLLRARARFMPKKHLQVALRNCSFGDWFVLMRVGNNISPELFRKLLEE
LYEAQSLIKIPPGADKI*
BS11774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zpg-PB | 367 | CG10125-PB | 1..367 | 1..367 | 1969 | 100 | Plus |
| zpg-PA | 367 | CG10125-PA | 1..367 | 1..367 | 1969 | 100 | Plus |
| Inx5-PB | 419 | CG7537-PB | 1..408 | 1..356 | 951 | 43.4 | Plus |
| Inx6-PA | 481 | CG17063-PA | 1..386 | 1..352 | 948 | 47.4 | Plus |
| Inx2-PD | 367 | CG4590-PD | 4..354 | 1..356 | 606 | 35.8 | Plus |
