BS11775.complete Sequence
1895 bp assembled on 2009-12-07
GenBank Submission: KX805359
> BS11775.complete
GAAGTTATCAGTCGACATGCATAAACCAAAGCTAGCGAATGCTATAACCG
CTGCCGCCATTGCCTCATCCATATCCACCAAAAACAACAACAACAACAGC
ATCGTCGGCGGCAGCAGCAGCAGCAGCTCCGGTGGCAACAAATCGAAGCG
ACCACGTCAGTTTGGCCAATACTCGATCGGAGTTGGAACTGGAGCTGGAG
CTGGGGGGCTACTCCGGTCGGACGACTCCGGCTTCGACCACCTCGACTAT
TCGTCACTAATTGGGGATTCGATTGATTTAGAGCACTACATCAGCGCCAT
GGAGGCACGTCGACACGACCAGGAGCCGGATGTTTGGGCCCAGCTGCAGC
AGAAGGAGTCGGACATCCTATTGGCCGCCGAACTGGGCAAGGCACTGCTC
GAGAAGAACGAGGAGCTGGTCAAACAGCAGGAAAAGCTCATCGAGGACTA
TTCGAGCAAAATTGAGAAACTCGAGCAGGAGAAGCATGTGCTGCGCCAAA
AATTGGCGATCGCCGAGGATGAGAGCGATCAGCGTGTCCTCGAGCTGCAG
TCCGATCTCACCGAGCTGAAGGATAAGCTGCAGACCCAAGACACCGCCAT
CCGGCAAGCGGAGAAGGAGAAGACCATCCTAATTGATGAGCTGCAGCACC
AGAACACACGGCTCACCGAACAGATCCAGGAGGCACACGCCACCGAGCTC
AAGCTCAGCGCACAGATCCAGGAGCTGAAGGATCAGTATCACTACAGGAA
CAGCAGCCTCCAGGAACATGTCAACAGCCTGGAGTCCATCAAAACAGAAC
TTAACCTCACTACGGGAAAGCGTCAGGAGCTGGAGCGTCGTCTGCAAATC
GCCCAGGAAGAGAAGGAGAGCCTCACCTCGTCGCTGGAGGAGTCCTCCGA
CAGAATCCACATGCTGGAGCGCCATGCCCGCGAGCAGGAAACAAAATTAG
AGACCACCTTACAAGCACTGGAACGCTCCCAGCGCGAAAACAATGTACTC
AGTGAACGTTTGGGTGCCGACACAAACTCGAGCACTCCGGGCAGAAAGAG
TTTGCAATTCGAAATGGAATGCGACGAGGACGATGGCAGCTATACGGAAA
CGGGGAAGCCCAACCAAATGTTCGTGGAAGCCCGATCCGTTTACATACAA
CTTAAGTCCCTGGTAGATTCACTAAAAGTTAGCCACGATGATGACTCAGG
ACTCAACTCCGACATATCGCTGGAGCTGGAGTCGATGGACAACACCATCT
CGAGCTCGGAACGCCACGAGGATGGACACCTGGCCATCGAGTTTCGCCAG
GGCATGTTGTCGTCGATGTCCGACGAGCTGACGCGGTTGCTGCTCAACCT
TGACGCTGGCAATTTCAAGAAGATGCTGGACCAGACGCGCAACCTGGTGC
TGGAGCAGGAGGACGAGATCAAGCGCAGCCACCAGCTTATTCAGCAACTG
GAAGCCAAGGTCACGGTAACGGACGTGGAGCTGCAGAACGTCAAGGAGGA
GAGAGATCAGGCACGCGGTGATCTCGAGGACAACACGGATCGGGATGAGC
TGCTGTCCAAGGCGCAGACAGAACGGGATGCGGCCAATGATAGGCGCACG
AAGGCCGAGGTTGAGCTGGCCAAGACGCGAGTGGAGCTGATGCAAGCCAA
TAGCCAACTGCTGGAGTCCATTCAGCAAAAGGTGGAGCTGTCACAGCAGC
TGGAACAGTGGCAGATGGACATGCACGAGCTGATCGACGAGCAGATGCGC
TCCAAGTTGATCAACAACCGGCGAGCGATGGCCGCCGAGTCCTCCGCCCC
ATCGCCACCCAGCAGTGCTGCCGCCAATCTGGCCAAGCGCGTGACCAGCT
ACAAGCTTTGGAGTTTATTTCAGCGATAAAAGCTTTCTAGACCAT
BS11775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32137-RB | 1863 | CG32137-PB | 1..1863 | 17..1879 | 9315 | 100 | Plus |
| CG32137-RA | 1581 | CG32137-PA | 1..1581 | 299..1879 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32137-RB | 3223 | CG32137-RB | 565..2428 | 16..1879 | 9320 | 100 | Plus |
| CG32137-RA | 2602 | CG32137-RA | 208..1807 | 280..1879 | 8000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13961170..13961852 | 1197..1879 | 3415 | 100 | Plus |
| 3L | 28110227 | 3L | 13941025..13941475 | 16..466 | 2255 | 100 | Plus |
| 3L | 28110227 | 3L | 13959527..13959826 | 465..764 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 13959886..13960077 | 761..952 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 13960923..13961104 | 1019..1200 | 910 | 100 | Plus |
| 3L | 28110227 | 3L | 13960620..13960688 | 951..1019 | 345 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6888 | 19..140 | 181 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2494 | 46..159 | 175 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1589 | 75..154 | 173 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2377 | 76..140 | 172 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2389 | 76..140 | 172 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2869 | 32..140 | 169 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6820 | 76..141 | 159 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6841 | 15..141 | 157 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1144 | 75..160 | 157 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6798 | 76..140 | 154 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2430 | 34..127 | 151 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6777 | 72..140 | 147 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2659 | 77..140 | 140 | 68.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..196 | 76..123 | 132 | 75 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9226 | 76..123 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2527 | 76..140 | 127 | 66.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3251..3358 | 23..128 | 121 | 58.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1154 | 83..124 | 120 | 76.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8392..8441 | 76..126 | 117 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6920 | 19..127 | 116 | 58.7 | Plus |
BS11775.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:51 Download gff for
BS11775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 563..2423 | 17..1877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:08:31 Download gff for
BS11775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 566..2426 | 17..1877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:35 Download gff for
BS11775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 563..2423 | 17..1877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:12 Download gff for
BS11775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32137-RB | 566..2426 | 17..1877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:12 Download gff for
BS11775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13941026..13941475 | 17..466 | 100 | -> | Plus |
| 3L | 13959529..13959825 | 467..763 | 100 | -> | Plus |
| 3L | 13959889..13960077 | 764..952 | 100 | -> | Plus |
| 3L | 13960622..13960687 | 953..1018 | 100 | -> | Plus |
| 3L | 13960923..13961103 | 1019..1199 | 100 | -> | Plus |
| 3L | 13961173..13961850 | 1200..1877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:08:31 Download gff for
BS11775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13954023..13954203 | 1019..1199 | 100 | -> | Plus |
| arm_3L | 13952989..13953177 | 764..952 | 100 | -> | Plus |
| arm_3L | 13953722..13953787 | 953..1018 | 100 | -> | Plus |
| arm_3L | 13934126..13934575 | 17..466 | 100 | -> | Plus |
| arm_3L | 13952629..13952925 | 467..763 | 100 | -> | Plus |
| arm_3L | 13954273..13954950 | 1200..1877 | 100 | | Plus |
BS11775.pep Sequence
Translation from 16 to 1878
> BS11775.pep
MHKPKLANAITAAAIASSISTKNNNNNSIVGGSSSSSSGGNKSKRPRQFG
QYSIGVGTGAGAGGLLRSDDSGFDHLDYSSLIGDSIDLEHYISAMEARRH
DQEPDVWAQLQQKESDILLAAELGKALLEKNEELVKQQEKLIEDYSSKIE
KLEQEKHVLRQKLAIAEDESDQRVLELQSDLTELKDKLQTQDTAIRQAEK
EKTILIDELQHQNTRLTEQIQEAHATELKLSAQIQELKDQYHYRNSSLQE
HVNSLESIKTELNLTTGKRQELERRLQIAQEEKESLTSSLEESSDRIHML
ERHAREQETKLETTLQALERSQRENNVLSERLGADTNSSTPGRKSLQFEM
ECDEDDGSYTETGKPNQMFVEARSVYIQLKSLVDSLKVSHDDDSGLNSDI
SLELESMDNTISSSERHEDGHLAIEFRQGMLSSMSDELTRLLLNLDAGNF
KKMLDQTRNLVLEQEDEIKRSHQLIQQLEAKVTVTDVELQNVKEERDQAR
GDLEDNTDRDELLSKAQTERDAANDRRTKAEVELAKTRVELMQANSQLLE
SIQQKVELSQQLEQWQMDMHELIDEQMRSKLINNRRAMAAESSAPSPPSS
AAANLAKRVTSYKLWSLFQR*
BS11775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32137-PB | 620 | CG32137-PB | 1..620 | 1..620 | 3070 | 100 | Plus |
| CG32137-PA | 526 | CG32137-PA | 1..526 | 95..620 | 2596 | 100 | Plus |
| zip-PH | 1964 | CG15792-PH | 840..1338 | 107..581 | 212 | 22.1 | Plus |
| zip-PG | 1971 | CG15792-PG | 832..1330 | 107..581 | 212 | 22.1 | Plus |
| zip-PE | 1971 | CG15792-PE | 832..1330 | 107..581 | 212 | 22.1 | Plus |
| zip-PH | 1964 | CG15792-PH | 1084..1628 | 92..609 | 194 | 19 | Plus |
| zip-PG | 1971 | CG15792-PG | 1076..1620 | 92..609 | 194 | 19 | Plus |
| zip-PH | 1964 | CG15792-PH | 917..1482 | 79..608 | 180 | 21.6 | Plus |
| zip-PG | 1971 | CG15792-PG | 909..1474 | 79..608 | 180 | 21.6 | Plus |
